gw.499.29.1 (Branchiostoma floridae)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 gw.499.29.1 T048692_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NEUROD1
M04148_2.00 		Homo sapiens
RMCATATGKYVNNNTAWTT
AAWTANNNBRMCATATGKY		 SELEX
Yin et al.(2017)
NEUROD1_FL_HT-SELEX 		0.856 0.808
NEUROD1
M08057_2.00 		Homo sapiens
NNVCAGATGGNNN
NNNCCATCTGBNN		 ChIP-seq
Mathelier et al.(2014)
MA1109.1 		0.856 0.808
NEUROD1
M08735_2.00 		Homo sapiens
RVCAGATGGY
RCCATCTGBY		 Misc
Kulakovskiy et al.(2013)
NDF1_HUMAN.H11MO.0.A 		0.856 0.808
Neurod1
M08764_2.00 		Mus musculus
RVCAGATGGY
RCCATCTGBY		 Misc
Kulakovskiy et al.(2013)
NDF1_MOUSE.H11MO.0.A 		0.856 0.808
Neurod1
M09474_2.00 		Mus musculus
RVCAGATGGY
RCCATCTGBY		 Misc
Heinz et al.(2010)
Islet-NeuroD1_GSE30298 		0.856 0.808
NEUROD1
M09873_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NEUROD_01 		0.856 0.808
NEUROD1
M09874_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$NEUROD_02 		0.856 0.808
NEUROD1
M04149_2.00 		Homo sapiens
RVCATATGBYVYNBTAWTW
WAWTAVNRBRVCATATGBY		 SELEX
Yin et al.(2017)
NEUROD1_FL_Methyl-HT-SELEX 		0.856 0.808
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
gw.499.29.1 bHLH 19 71

Links

Other bHLH family TFs
Other Branchiostoma floridae TFs

213 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
neurod6b Takifugu rubripes ENSTRUG00000000001 I 0.880
neurod6b Takifugu rubripes ENSTRUG00000012378 I 0.880
ENSTSYG00000003704 Tarsius syrichta ENSTSYG00000003704 I 0.868
NEUROD4 Microcebus murinus ENSMICG00000008491 I 0.868
NEUROD4 Tursiops truncatus ENSTTRG00000016039 I 0.868
NEUROD4 Myotis lucifugus ENSMLUG00000028491 I 0.868
NEUROD4 Meleagris gallopavo ENSMGAG00000005085 I 0.868
NEUROD4 Takifugu rubripes ENSTRUG00000013677 I 0.868
ENSMPUG00000018960 Mustela putorius furo ENSMPUG00000018960 I 0.868
neurod4 Takifugu rubripes ENSTRUG00000013273 I 0.868
ENSLOCG00000018210 Lepisosteus oculatus ENSLOCG00000018210 I 0.868
ENSMMUG00000002604 Macaca mulatta ENSMMUG00000002604 I 0.868
NEUROD4 Vicugna pacos ENSVPAG00000012065 I 0.868
Aan_R011092 Calypte anna Aan_R011092 I 0.868
ENSGMOG00000000887 Gadus morhua ENSGMOG00000000887 I 0.868
NEUROD4 Gorilla gorilla ENSGGOG00000004295 I 0.868
ENSGALG00000024396 Gallus gallus ENSGALG00000024396 I 0.868
Alligator_sinensis_CCG005119.1 Alligator sinensis Alligator_sinensis_CCG005119.1 I 0.868
ENSGMOG00000006899 Gadus morhua ENSGMOG00000006899 I 0.868
HelroG70666 Helobdella robusta HelroG70666 I 0.868
NEUROD4 Loxodonta africana ENSLAFG00000029446 I 0.868
ENSXMAG00000011061 Xiphophorus maculatus ENSXMAG00000011061 I 0.868
ENSXMAG00000020272 Xiphophorus maculatus ENSXMAG00000020272 I 0.868
ENSLACG00000013009 Latimeria chalumnae ENSLACG00000013009 I 0.868
neurod4 Tetraodon nigroviridis ENSTNIG00000002442 I 0.868
NEUROD4 Tetraodon nigroviridis ENSTNIG00000000015 I 0.868
ENSPANG00000024988 Papio anubis ENSPANG00000024988 I 0.868
NEUROD4 Procavia capensis ENSPCAG00000002075 I 0.868
ENSORLG00000019867 Oryzias latipes ENSORLG00000019867 I 0.868
ENSSHAG00000008330 Sarcophilus harrisii ENSSHAG00000008330 I 0.868
neurod4 Oryzias latipes ENSORLG00000007467 I 0.868
Neurod4 Rattus norvegicus ENSRNOG00000008449 I 0.868
ENSPFOG00000008824 Poecilia formosa ENSPFOG00000008824 I 0.868
ENSPSIG00000001952 Pelodiscus sinensis ENSPSIG00000001952 I 0.868
NEUROD4 Pan troglodytes ENSPTRG00000005049 I 0.868
ENSPPYG00000004613 Pongo abelii ENSPPYG00000004613 I 0.868
ENSPFOG00000020285 Poecilia formosa ENSPFOG00000020285 I 0.868
ENSSSCG00000000300 Sus scrofa ENSSSCG00000000300 I 0.868
ENSONIG00000021173 Oreochromis niloticus ENSONIG00000021173 I 0.868
NEUROD4 Tupaia belangeri ENSTBEG00000000432 I 0.868
ENSNLEG00000017618 Nomascus leucogenys ENSNLEG00000017618 I 0.868
NEUROD4 Taeniopygia guttata ENSTGUG00000003762 I 0.868
Neurod4 Mus musculus ENSMUSG00000048015 I 0.868
NEUROD4 Ornithorhynchus anatinus ENSOANG00000011626 I 0.868
ENSSTOG00000024443 Ictidomys tridecemlineatus ENSSTOG00000024443 I 0.868
ENSONIG00000020540 Oreochromis niloticus ENSONIG00000020540 I 0.868
CapteG111699 Capitella teleta CapteG111699 I 0.868
NEUROD4 Otolemur garnettii ENSOGAG00000009685 I 0.868
ENSOARG00000018394 Ovis aries ENSOARG00000018394 I 0.868
neurod4 Gasterosteus aculeatus ENSGACG00000008952 I 0.868
LotgiG59712 Lottia gigantea LotgiG59712 I 0.868
NEUROD4 Equus caballus ENSECAG00000001002 I 0.868
Myotis_brandtii_NEUROD4_10003502 Myotis brandtii Myotis_brandtii_NEUROD4_10003502 I 0.868
ENSAMXG00000026500 Astyanax mexicanus ENSAMXG00000026500 I 0.868
Ocbimv22021915m.g Octopus bimaculoides Ocbimv22021915m.g I 0.868
ENSP00000242994 Macaca fascicularis ENSP00000242994 I 0.868
NEUROD4 Echinops telfairi ENSETEG00000009519 I 0.868
NEUROD4 Dasypus novemcinctus ENSDNOG00000009650 I 0.868
Ogr05448 Ophisaurus gracilis Ogr05448 I 0.868
NEUROD4 Canis familiaris ENSCAFG00000006347 I 0.868
NEUROD4 Callithrix jacchus ENSCJAG00000019123 I 0.868
NEUROD4 Cavia porcellus ENSCPOG00000002913 I 0.868
Pvit_05839 Pogona vitticeps Pvit_05839 I 0.868
neurod4 Danio rerio ENSDARG00000003469 I 0.868
NEUROD4 Bos taurus ENSBTAG00000005626 I 0.868
ENSP00000242994-D1 Bos grunniens ENSP00000242994-D1 I 0.868
ENSAMXG00000026481 Astyanax mexicanus ENSAMXG00000026481 I 0.868
NEUROD4 Homo sapiens ENSG00000123307 I 0.868
NEUROD4 Anolis carolinensis ENSACAG00000014910 I 0.868
ENSFALG00000015099 Ficedula albicollis ENSFALG00000015099 I 0.868
BGLB013872 Biomphalaria glabrata BGLB013872 I 0.868
CGI_10016130 Crassostrea gigas CGI_10016130 I 0.868
NEUROD4 Gasterosteus aculeatus ENSGACG00000000702 I 0.868
CapteG169232 Capitella teleta CapteG169232 I 0.868
ENSAMEG00000018597 Ailuropoda melanoleuca ENSAMEG00000018597 I 0.868
NEUROD4 Felis catus ENSFCAG00000013284 I 0.868
neurod4.L Xenopus laevis XB-GENE-972708 I 0.868
neurod4 Xenopus tropicalis XB-GENE-972704 I 0.868
neurod6b Tetraodon nigroviridis ENSTNIG00000018633 I 0.859
NEUROD1 Pan troglodytes ENSPTRG00000012702 I 0.856
ENSSTOG00000002956 Ictidomys tridecemlineatus ENSSTOG00000002956 I 0.856
Neurod6 Rattus norvegicus ENSRNOG00000026055 I 0.856
2111505A Xenopus laevis 2111505A I 0.856
Sakowv30011934m.g Saccoglossus kowalevskii Sakowv30011934m.g I 0.856
neurod6.L Xenopus laevis XB-GENE-969232 I 0.856
neurod6 Xenopus tropicalis XB-GENE-969227 I 0.856
ENSSTOG00000019627 Ictidomys tridecemlineatus ENSSTOG00000019627 I 0.856
NEUROD1 Sus scrofa ENSSSCG00000016011 I 0.856
neurod1 Xenopus tropicalis XB-GENE-963757 I 0.856
neurod1.S Xenopus laevis XB-GENE-963762 I 0.856
ENSSHAG00000015217 Sarcophilus harrisii ENSSHAG00000015217 I 0.856
ENSSHAG00000009773 Sarcophilus harrisii ENSSHAG00000009773 I 0.856
neurod1.L Xenopus laevis XB-GENE-6252655 I 0.856
Neurod1 Rattus norvegicus ENSRNOG00000005609 I 0.856
NEUROD1 Sorex araneus ENSSARG00000008648 I 0.856
AAY99628 Xenopus tropicalis AAY99628 I 0.856
NEUROD6 Pan troglodytes ENSPTRG00000019050 I 0.856
NEUROD6 Pteropus vampyrus ENSPVAG00000014789 I 0.856
Ogr14107 Ophisaurus gracilis Ogr14107 I 0.856
ENSPSIG00000001006 Pelodiscus sinensis ENSPSIG00000001006 I 0.856
Aan_R004820 Calypte anna Aan_R004820 I 0.856
ENSBTAP00000002301-D1 Bos grunniens ENSBTAP00000002301-D1 I 0.856
ENSXMAG00000019613 Xiphophorus maculatus ENSXMAG00000019613 I 0.856
ENSP00000295108 Macaca fascicularis ENSP00000295108 I 0.856
ENSXMAG00000001517 Xiphophorus maculatus ENSXMAG00000001517 I 0.856
Aan_R008719 Calypte anna Aan_R008719 I 0.856
ENSBTAP00000000728-D1 Bos grunniens ENSBTAP00000000728-D1 I 0.856
Brh_R011298 Buceros rhinoceros Brh_R011298 I 0.856
Alligator_sinensis_CCG009407.1 Alligator sinensis Alligator_sinensis_CCG009407.1 I 0.856
Afo_R010643 Aptenodytes forsteri Afo_R010643 I 0.856
Cmyd_10009140 Chelonia mydas Cmyd_10009140 I 0.856
Cmyd_10010338 Chelonia mydas Cmyd_10010338 I 0.856
Afo_R007497 Aptenodytes forsteri Afo_R007497 I 0.856
ENSP00000297142 Macaca fascicularis ENSP00000297142 I 0.856
NEUROD1 Tursiops truncatus ENSTTRG00000016757 I 0.856
Alligator_sinensis_CCG020348.1 Alligator sinensis Alligator_sinensis_CCG020348.1 I 0.856
Ogr07339 Ophisaurus gracilis Ogr07339 I 0.856
neurod1 Tetraodon nigroviridis ENSTNIG00000003533 I 0.856
Pvit_17470 Pogona vitticeps Pvit_17470 I 0.856
NEUROD6 Taeniopygia guttata ENSTGUG00000001910 I 0.856
Tal_R006127 Tyto alba Tal_R006127 I 0.856
Myotis_brandtii_NEUROD6_10033978 Myotis brandtii Myotis_brandtii_NEUROD6_10033978 I 0.856
neurod1 Takifugu rubripes ENSTRUG00000014252 I 0.856
Gfo_R005849 Geospiza fortis Gfo_R005849 I 0.856
Gfo_R001419 Geospiza fortis Gfo_R001419 I 0.856
NEUROD6 Tursiops truncatus ENSTTRG00000000347 I 0.856
ENSTSYG00000012547 Tarsius syrichta ENSTSYG00000012547 I 0.856
Myotis_brandtii_NEUROD1_10035039 Myotis brandtii Myotis_brandtii_NEUROD1_10035039 I 0.856
NEUROD6 Tupaia belangeri ENSTBEG00000013747 I 0.856
ENSONIG00000009263 Oreochromis niloticus ENSONIG00000009263 I 0.856
ENSFALG00000014089 Ficedula albicollis ENSFALG00000014089 I 0.856
ENSFALG00000015273 Ficedula albicollis ENSFALG00000015273 I 0.856
NEUROD1 Felis catus ENSFCAG00000004553 I 0.856
NEUROD6 Felis catus ENSFCAG00000026161 I 0.856
NEUROD1 Echinops telfairi ENSETEG00000018112 I 0.856
NEUROD6 Erinaceus europaeus ENSEEUG00000007073 I 0.856
ENSDORG00000012142 Dipodomys ordii ENSDORG00000012142 I 0.856
NEUROD1 Equus caballus ENSECAG00000012181 I 0.856
NEUROD6 Equus caballus ENSECAG00000020776 I 0.856
NEUROD1 Homo sapiens ENSG00000162992 D 0.856
NEUROD6 Homo sapiens ENSG00000164600 I 0.856
NEUROD1 Gorilla gorilla ENSGGOG00000027940 I 0.856
ENSGMOG00000014666 Gadus morhua ENSGMOG00000014666 I 0.856
ENSGMOG00000017265 Gadus morhua ENSGMOG00000017265 I 0.856
NEUROD6 Gorilla gorilla ENSGGOG00000026908 I 0.856
ENSGALG00000012235 Gallus gallus ENSGALG00000012235 I 0.856
neurod1 Gasterosteus aculeatus ENSGACG00000002064 I 0.856
neurod6b Gasterosteus aculeatus ENSGACG00000017176 I 0.856
NEUROD1 Gallus gallus ENSGALG00000008908 I 0.856
NEUROD6 Dasypus novemcinctus ENSDNOG00000014272 I 0.856
NEUROD1 Dasypus novemcinctus ENSDNOG00000012297 I 0.856
ENSAPLG00000001566 Anas platyrhynchos ENSAPLG00000001566 I 0.856
ENSAPLG00000009187 Anas platyrhynchos ENSAPLG00000009187 I 0.856
NEUROD6 Bos taurus ENSBTAG00000000558 I 0.856
NEUROD1 Bos taurus ENSBTAG00000001755 I 0.856
ENSAMXG00000014944 Astyanax mexicanus ENSAMXG00000014944 I 0.856
ENSAMXG00000001281 Astyanax mexicanus ENSAMXG00000001281 I 0.856
NEUROD6 Anolis carolinensis ENSACAG00000009699 I 0.856
ENSAMEG00000019191 Ailuropoda melanoleuca ENSAMEG00000019191 I 0.856
ENSAMEG00000019439 Ailuropoda melanoleuca ENSAMEG00000019439 I 0.856
NEUROD6 Canis familiaris ENSCAFG00000003122 I 0.856
NEUROD6 Callithrix jacchus ENSCJAG00000008997 I 0.856
neurod1 Danio rerio ENSDARG00000019566 I 0.856
neurod6b Danio rerio ENSDARG00000020794 I 0.856
neurod6a Danio rerio ENSDARG00000040008 I 0.856
ENSCSAG00000019605 Chlorocebus sabaeus ENSCSAG00000019605 I 0.856
ENSCSAG00000018652 Chlorocebus sabaeus ENSCSAG00000018652 I 0.856
NEUROD1 Callithrix jacchus ENSCJAG00000011529 I 0.856
NEUROD6 Cavia porcellus ENSCPOG00000006406 I 0.856
NEUROD1 Cavia porcellus ENSCPOG00000025248 I 0.856
ENSPSIG00000000416 Pelodiscus sinensis ENSPSIG00000000416 I 0.856
ENSLACG00000002237 Latimeria chalumnae ENSLACG00000002237 I 0.856
ENSONIG00000006878 Oreochromis niloticus ENSONIG00000006878 I 0.856
ENSONIG00000021273 Oreochromis niloticus ENSONIG00000021273 I 0.856
NEUROD6 Ochotona princeps ENSOPRG00000006565 I 0.856
NEUROD1 Ochotona princeps ENSOPRG00000008607 I 0.856
NEUROD1 Otolemur garnettii ENSOGAG00000025613 I 0.856
NEUROD6 Otolemur garnettii ENSOGAG00000001911 I 0.856
NEUROD1 Ornithorhynchus anatinus ENSOANG00000003630 I 0.856
NEUROD6 Ornithorhynchus anatinus ENSOANG00000011606 I 0.856
ENSOARG00000008435 Ovis aries ENSOARG00000008435 I 0.856
neurod1 Oryzias latipes ENSORLG00000010563 I 0.856
neurod6b Oryzias latipes ENSORLG00000017789 I 0.856
ENSPMAG00000007548 Petromyzon marinus ENSPMAG00000007548 I 0.856
ENSPPYG00000017666 Pongo abelii ENSPPYG00000017666 I 0.856
ENSPPYG00000029484 Pongo abelii ENSPPYG00000029484 I 0.856
ENSPFOG00000014944 Poecilia formosa ENSPFOG00000014944 I 0.856
ENSPFOG00000005949 Poecilia formosa ENSPFOG00000005949 I 0.856
ENSPANG00000007303 Papio anubis ENSPANG00000007303 I 0.856
NEUROD6 Procavia capensis ENSPCAG00000005309 I 0.856
NEUROD1 Procavia capensis ENSPCAG00000008927 I 0.856
ENSNLEG00000015231 Nomascus leucogenys ENSNLEG00000015231 I 0.856
ENSNLEG00000006322 Nomascus leucogenys ENSNLEG00000006322 I 0.856
NEUROD6 Meleagris gallopavo ENSMGAG00000012144 I 0.856
ENSMICG00000012663 Microcebus murinus ENSMICG00000012663 I 0.856
NEUROD6 Microcebus murinus ENSMICG00000012974 I 0.856
ENSMEUG00000016098 Macropus eugenii ENSMEUG00000016098 I 0.856
ENSLOCG00000017829 Lepisosteus oculatus ENSLOCG00000017829 I 0.856
NEUROD1 Loxodonta africana ENSLAFG00000000612 I 0.856
NEUROD6 Loxodonta africana ENSLAFG00000018034 I 0.856
ENSLOCG00000012935 Lepisosteus oculatus ENSLOCG00000012935 I 0.856
NEUROD6 Myotis lucifugus ENSMLUG00000017761 I 0.856
NEUROD1 Myotis lucifugus ENSMLUG00000025259 I 0.856
ENSMPUG00000019108 Mustela putorius furo ENSMPUG00000019108 I 0.856
Neurod1 Mus musculus ENSMUSG00000034701 D 0.856
Neurod6 Mus musculus ENSMUSG00000037984 I 0.856
ENSMPUG00000005372 Mustela putorius furo ENSMPUG00000005372 I 0.856
NEUROD6 Monodelphis domestica ENSMODG00000013299 I 0.856
NEUROD1 Macaca mulatta ENSMMUG00000008296 I 0.856
ENSLACG00000013264 Latimeria chalumnae ENSLACG00000013264 I 0.856
NEUROD6 Macaca mulatta ENSMMUG00000022699 I 0.856
NEUROD1 Monodelphis domestica ENSMODG00000010392 I 0.856
ENSGMOG00000009610 Gadus morhua ENSGMOG00000009610 I 0.840