CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Aquca_005_00425
(
Aquilegia coerulea
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Aquca_005_00425
T048967_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ILR3
M01714_2.00
Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH7211
0.850
0.804
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Aquca_005_00425.1
bHLH
76
126
SGSKACREKMRRDRLNERFLELGSILEPGRPPKMDKAAILSDAVRMVTQLR
Aquca_005_00425.2
bHLH
22
72
SGSKACREKMRRDRLNERFLELGSILEPGRPPKMDKAAILSDAVRMVTQLR
Aquca_005_00425.3
bHLH
1
42
MRRDRLNERFLELGSILEPGRPPKMDKAAILSDAVRMVTQLR
Links
Other
bHLH
family TFs
Other
Aquilegia coerulea
TFs
64 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
VIT_12s0059g02650
Vitis vinifera
VIT_12s0059g02650
I
0.901
PRUPE_ppa010730mg
Prunus persica
PRUPE_ppa010730mg
I
0.881
cassava37032.valid.m1
Manihot esculenta
cassava37032.valid.m1
I
0.878
Cucsa.267130
Cucumis sativus
Cucsa.267130
I
0.878
Cucsa.267170
Cucumis sativus
Cucsa.267170
I
0.878
cassava37031.valid.m1
Manihot esculenta
cassava37031.valid.m1
I
0.878
Pm029465
Prunus mume
Pm029465
I
0.878
Ca_06956
Cicer arietinum
Ca_06956
I
0.878
Ca_16355
Cicer arietinum
Ca_16355
I
0.878
Cla001735
Citrullus lanatus
Cla001735
I
0.878
28166.m001054
Ricinus communis
28166.m001054
I
0.878
Ciclev10009354m.g
Citrus clementina
Ciclev10009354m.g
I
0.878
MDP0000264803
Malus domestica
MDP0000264803
I
0.878
orange1.1g026599m.g
Citrus sinensis
orange1.1g026599m.g
I
0.878
SapurV1A.0712s0010
Salix purpurea
SapurV1A.0712s0010
I
0.878
PK23013.1
Cannabis sativa
PK23013.1
I
0.878
Lus10043076.g
Linum usitatissimum
Lus10043076.g
I
0.878
Lus10011167.g
Linum usitatissimum
Lus10011167.g
I
0.878
evm.TU.supercontig_97.78
Carica papaya
evm.TU.supercontig_97.78
I
0.878
gene03303-v1.0-hybrid
Fragaria vesca
gene03303-v1.0-hybrid
I
0.878
gene24654-v1.0-hybrid
Fragaria vesca
gene24654-v1.0-hybrid
I
0.878
Eucgr.F03420
Eucalyptus grandis
Eucgr.F03420
I
0.878
cassava24574.valid.m1
Manihot esculenta
cassava24574.valid.m1
I
0.878
POPTR_0001s44230
Populus trichocarpa
POPTR_0001s44230
I
0.878
MTR_4g081370
Medicago truncatula
MTR_4g081370
I
0.878
MTR_2g082640
Medicago truncatula
MTR_2g082640
I
0.878
PRUPE_ppa009077mg
Prunus persica
PRUPE_ppa009077mg
I
0.878
POPTR_0011s13580
Populus trichocarpa
POPTR_0011s13580
I
0.878
TCM_031118
Theobroma cacao
TCM_031118
I
0.878
GLYMA06G41620
Glycine max
GLYMA06G41620
I
0.878
Ciclev10016381m.g
Citrus clementina
Ciclev10016381m.g
N
0.875
orange1.1g026646m.g
Citrus sinensis
orange1.1g026646m.g
N
0.875
Bo3g021940
Brassica oleracea
Bo3g021940
I
0.870
GLYMA12G34300
Glycine max
GLYMA12G34300
I
0.867
chr3.CM0155.80.nd
Lotus japonicus
chr3.CM0155.80.nd
N
0.866
VIT_00s0532g00050
Vitis vinifera
VIT_00s0532g00050
N
0.856
fgenesh1_pg.scaffold_13000185
Physcomitrella patens
fgenesh1_pg.scaffold_13000185
I
0.855
e_gw1.229.33.1
Physcomitrella patens
e_gw1.229.33.1
I
0.855
SELMODRAFT_165556
Selaginella moellendorffii
SELMODRAFT_165556
I
0.855
TCM_030082
Theobroma cacao
TCM_030082
I
0.855
estExt_gwp_gw1.C_2460032
Physcomitrella patens
estExt_gwp_gw1.C_2460032
I
0.855
SELMODRAFT_165311
Selaginella moellendorffii
SELMODRAFT_165311
I
0.855
GSMUA_Achr8G33180_001
Musa acuminata
GSMUA_Achr8G33180_001
I
0.853
GSMUA_Achr4G05310_001
Musa acuminata
GSMUA_Achr4G05310_001
N
0.851
ILR3
Arabidopsis lyrata
fgenesh2_kg.8__1365__AT5G54680.1
I
0.850
Thhalv10014564m.g
Eutrema salsugineum
Thhalv10014564m.g
I
0.850
Bra022738
Brassica rapa
Bra022738
I
0.850
Bra002964
Brassica rapa
Bra002964
I
0.850
ILR3
Arabidopsis thaliana
AT5G54680
D
0.850
Bostr.26833s0797
Boechera stricta
Bostr.26833s0797
I
0.850
Carubv10026758m.g
Capsella rubella
Carubv10026758m.g
I
0.850
Cagra.1629s0040
Capsella grandiflora
Cagra.1629s0040
I
0.850
fgenesh1_pg.scaffold_31000088
Physcomitrella patens
fgenesh1_pg.scaffold_31000088
I
0.844
estExt_fgenesh1_pg.C_1360017
Physcomitrella patens
estExt_fgenesh1_pg.C_1360017
I
0.844
PDK_20s1322801g004
Phoenix dactylifera
PDK_20s1322801g004
N
0.843
AMTR_s00029p00112130
Amborella trichopoda
AMTR_s00029p00112130
N
0.843
mgf009119m
Mimulus guttatus
mgf009119m
I
0.843
Eucgr.K00871
Eucalyptus grandis
Eucgr.K00871
N
0.843
PK08792.1
Cannabis sativa
PK08792.1
N
0.841
GLYMA15G06860
Glycine max
GLYMA15G06860
I
0.840
GLYMA13G36260
Glycine max
GLYMA13G36260
I
0.840
GLYMA15G06803
Glycine max
GLYMA15G06803
I
0.840
Bra029011
Brassica rapa
Bra029011
I
0.839