CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Aquca_006_00387
(
Aquilegia coerulea
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Aquca_006_00387
T048973_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BIM2
M01701_2.00
Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8089
0.858
0.804
BIM2
M06727_2.00
Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN
NNNNNNNNNNNVDCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_colamp
0.858
0.804
BIM2
M06728_2.00
Arabidopsis thaliana
CACGTGMBNNNCVYV
BRBGNNNVKCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_col_v3b
0.858
0.804
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Aquca_006_00387.1
bHLH
50
100
PRSKHSETEQRRRSKINERFQILRDLLPPSDQKRDKASFLLEVIEYVQFLH
Aquca_006_00387.2
bHLH
48
98
PRSKHSETEQRRRSKINERFQILRDLLPPSDQKRDKASFLLEVIEYVQFLH
Aquca_006_00387.3
bHLH
50
100
PRSKHSETEQRRRSKINERFQILRDLLPPSDQKRDKASFLLEVIEYVQFLH
Aquca_006_00387.4
bHLH
50
100
PRSKHSETEQRRRSKINERFQILRDLLPPSDQKRDKASFLLEVIEYVQFLH
Aquca_006_00387.5
bHLH
50
100
PRSKHSETEQRRRSKINERFQILRDLLPPSDQKRDKASFLLEVIEYVQFLH
Links
Other
bHLH
family TFs
Other
Aquilegia coerulea
TFs
84 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy