CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Bostr.19424s0322
(
Boechera stricta
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Bostr.19424s0322
T049093_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BHLH34
M01704_2.00
Arabidopsis thaliana
VCACGYGH
DCRCGTGB
PBM
Weirauch et al.(2014)
pTH7212
0.840
0.941
BHLH34
M06734_2.00
Arabidopsis thaliana
NNNHNNDNNNNVCACGTGHCN
NGDCACGTGBNNNNHNNDNNN
Dap-seq
OMalley et al.(2016)
bHLH34_colamp_a
0.840
0.941
BHLH34
M06735_2.00
Arabidopsis thaliana
RWRNNNNNCACGTGBNNNNNNNN
NNNNNNNNVCACGTGNNNNNYWY
Dap-seq
OMalley et al.(2016)
bHLH34_col
0.840
0.941
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bostr.19424s0322.1.p
bHLH
171
221
PGTKACREKLRREKLNDRFMDLSSVLEPGRTPTTDKLAILDDAIRVVNQLR
Links
Other
bHLH
family TFs
Other
Boechera stricta
TFs
8 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10014200m.g
Capsella rubella
Carubv10014200m.g
N
0.875
Cagra.9939s0003
Capsella grandiflora
Cagra.9939s0003
N
0.875
mgf001486m
Mimulus guttatus
mgf001486m
N
0.850
mgf008214m
Mimulus guttatus
mgf008214m
N
0.844
BHLH34
Arabidopsis thaliana
AT3G23210
D
0.840
Bo4g126940
Brassica oleracea
Bo4g126940
I
0.840
bHLH34
Arabidopsis lyrata
fgenesh2_kg.3__2536__AT3G23210.1
I
0.840
VIT_05s0049g00460
Vitis vinifera
VIT_05s0049g00460
N
0.838