CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bostr.25993s0069
(
Boechera stricta
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Bostr.25993s0069
T049125_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PIF3
M00854_2.00
Arabidopsis thaliana
CACGTGSNN
NNSCACGTG
PBM
Franco-Zorrilla et al.(2014)
PIF3
0.843
0.700
PIF3
M00722_2.00
Arabidopsis thaliana
NCACRTN
NAYGTGN
PBM
Chang et al.(2013)
pTH8200
0.843
0.700
PK05451.1
M01120_2.00
Cannabis sativa
YCACGTGM
KCACGTGR
PBM
Lambert et al.(2019)
pTH10100
0.843
0.700
PIF3
M08045_2.00
Arabidopsis thaliana
HCACGTGGVH
DBCCACGTGD
ChIP-seq
Mathelier et al.(2014)
MA0560.1
0.843
0.700
PIF3
M09780_2.00
Arabidopsis thaliana
BDRRRVCACGTGRVSHCD
HGDSBYCACGTGBYYYHV
Transfac
Matys et al.(2006)
P$PIF3_01
0.843
0.700
PIF3
M09781_2.00
Arabidopsis thaliana
DDDVCCACGTGGVMVNB
VNBKBCCACGTGGBHHH
Transfac
Matys et al.(2006)
P$PIF3_02
0.843
0.700
UNE10
M01705_2.00
Arabidopsis thaliana
HCACGTGM
KCACGTGD
PBM
Weirauch et al.(2014)
pTH8112
0.839
0.540
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bostr.25993s0069.1.p
bHLH
225
274
STEVHKLSERKRRDEFNKKMRALQDLLPNCDKDDKASLLDEAIKYMRTLQ
Links
Other
bHLH
family TFs
Other
Boechera stricta
TFs
171 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PIL1
Arabidopsis thaliana
AT2G46970
I
0.914
Cagra.0050s0002
Capsella grandiflora
Cagra.0050s0002
I
0.914
PIL1
Arabidopsis lyrata
scaffold_403670.1
N
0.903
Carubv10023299m.g
Capsella rubella
Carubv10023299m.g
N
0.884
orange1.1g038097m.g
Citrus sinensis
orange1.1g038097m.g
I
0.863
POPTR_0014s10700
Populus trichocarpa
POPTR_0014s10700
I
0.863
SapurV1A.0321s0050
Salix purpurea
SapurV1A.0321s0050
I
0.863
Gorai.001G148300
Gossypium raimondii
Gorai.001G148300
I
0.863
Ciclev10019786m.g
Citrus clementina
Ciclev10019786m.g
I
0.863
Eucgr.A00998
Eucalyptus grandis
Eucgr.A00998
I
0.862
cassava12867.valid.m1
Manihot esculenta
cassava12867.valid.m1
I
0.843
Pm003265
Prunus mume
Pm003265
I
0.843
Pm024836
Prunus mume
Pm024836
I
0.843
30128.m008988
Ricinus communis
30128.m008988
I
0.843
30138.m004021
Ricinus communis
30138.m004021
I
0.843
cassava17681.valid.m1
Manihot esculenta
cassava17681.valid.m1
I
0.843
estExt_fgenesh1_pg.C_680048
Physcomitrella patens
estExt_fgenesh1_pg.C_680048
I
0.843
estExt_fgenesh1_pg.C_690022
Physcomitrella patens
estExt_fgenesh1_pg.C_690022
I
0.843
e_gw1.84.236.1
Physcomitrella patens
e_gw1.84.236.1
I
0.843
Cucsa.113040
Cucumis sativus
Cucsa.113040
I
0.843
cassava46185.m1
Manihot esculenta
cassava46185.m1
I
0.843
Cucsa.090320
Cucumis sativus
Cucsa.090320
I
0.843
cassava17680.valid.m1
Manihot esculenta
cassava17680.valid.m1
I
0.843
Ca_03591
Cicer arietinum
Ca_03591
I
0.843
Si035334m.g
Setaria italica
Si035334m.g
I
0.843
Solyc01g102300.2
Solanum lycopersicum
Solyc01g102300.2
I
0.843
AMTR_s00045p00141060
Amborella trichopoda
AMTR_s00045p00141060
I
0.843
Si021472m.g
Setaria italica
Si021472m.g
I
0.843
Si000698m.g
Setaria italica
Si000698m.g
I
0.843
SELMODRAFT_116654
Selaginella moellendorffii
SELMODRAFT_116654
I
0.843
SELMODRAFT_118904
Selaginella moellendorffii
SELMODRAFT_118904
I
0.843
TCM_014141
Theobroma cacao
TCM_014141
I
0.843
TCM_026851
Theobroma cacao
TCM_026851
I
0.843
PIF7
Vitis vinifera
VIT_17s0000g06930
I
0.843
gw1.147.92.1
Physcomitrella patens
gw1.147.92.1
I
0.843
Cla018863
Citrullus lanatus
Cla018863
I
0.843
PIF3
Vitis vinifera
VIT_14s0060g00260
I
0.843
Traes_1DS_55E91A134
Triticum aestivum
Traes_1DS_55E91A134
I
0.843
Traes_1AL_914726769
Triticum aestivum
Traes_1AL_914726769
I
0.843
Traes_1BS_D1FCBFBE8
Triticum aestivum
Traes_1BS_D1FCBFBE8
I
0.843
Cla020302
Citrullus lanatus
Cla020302
I
0.843
Bostr.25494s0011
Boechera stricta
Bostr.25494s0011
I
0.843
Pavir.Ea01048
Panicum virgatum
Pavir.Ea01048
I
0.843
Pavir.Ia02188
Panicum virgatum
Pavir.Ia02188
I
0.843
Pavir.J18019
Panicum virgatum
Pavir.J18019
I
0.843
Pavir.Ca01237
Panicum virgatum
Pavir.Ca01237
I
0.843
orange1.1g006040m.g
Citrus sinensis
orange1.1g006040m.g
I
0.843
MDP0000288670
Malus domestica
MDP0000288670
I
0.843
MDP0000290263
Malus domestica
MDP0000290263
I
0.843
SapurV1A.0442s0220
Salix purpurea
SapurV1A.0442s0220
I
0.843
SapurV1A.1016s0050
Salix purpurea
SapurV1A.1016s0050
I
0.843
PDK_20s1775531g001
Phoenix dactylifera
PDK_20s1775531g001
I
0.843
PDK_20s1306831g002
Phoenix dactylifera
PDK_20s1306831g002
I
0.843
chr5.CM0048.80.nd
Lotus japonicus
chr5.CM0048.80.nd
I
0.843
PK15531.1
Cannabis sativa
PK15531.1
I
0.843
Thhalv10007343m.g
Eutrema salsugineum
Thhalv10007343m.g
I
0.843
PK05451.1
Cannabis sativa
PK05451.1
D
0.843
Lus10029805.g
Linum usitatissimum
Lus10029805.g
I
0.843
Lus10020727.g
Linum usitatissimum
Lus10020727.g
I
0.843
Cagra.4395s0138
Capsella grandiflora
Cagra.4395s0138
I
0.843
Carubv10008815m.g
Capsella rubella
Carubv10008815m.g
I
0.843
SELMODRAFT_114141
Selaginella moellendorffii
SELMODRAFT_114141
I
0.843
PDK_20s1486002g002
Phoenix dactylifera
PDK_20s1486002g002
I
0.843
mgf017958m
Mimulus guttatus
mgf017958m
I
0.843
Aquca_003_00259
Aquilegia coerulea
Aquca_003_00259
I
0.843
Ciclev10027890m.g
Citrus clementina
Ciclev10027890m.g
I
0.843
Eucgr.B01825
Eucalyptus grandis
Eucgr.B01825
I
0.843
Gorai.007G118100
Gossypium raimondii
Gorai.007G118100
I
0.843
Gorai.007G309400
Gossypium raimondii
Gorai.007G309400
I
0.843
Gorai.001G078500
Gossypium raimondii
Gorai.001G078500
I
0.843
gene26073-v1.0-hybrid
Fragaria vesca
gene26073-v1.0-hybrid
I
0.843
evm.TU.supercontig_1213.3
Carica papaya
evm.TU.supercontig_1213.3
I
0.843
gene22963-v1.0-hybrid
Fragaria vesca
gene22963-v1.0-hybrid
I
0.843
mgf009653m
Mimulus guttatus
mgf009653m
I
0.843
TCM_004959
Theobroma cacao
TCM_004959
I
0.843
GSMUA_Achr5G18390_001
Musa acuminata
GSMUA_Achr5G18390_001
I
0.843
LPERR01G10950
Leersia perrieri
LPERR01G10950
I
0.843
LPERR10G14070
Leersia perrieri
LPERR10G14070
I
0.843
GRMZM2G387528
Zea mays
GRMZM2G387528
I
0.843
GRMZM2G115960
Zea mays
GRMZM2G115960
I
0.843
GLYMA19G41261
Glycine max
GLYMA19G41261
I
0.843
GLYMA20G22291
Glycine max
GLYMA20G22291
I
0.843
MLOC_68598
Hordeum vulgare
MLOC_68598
I
0.843
MTR_1g084980
Medicago truncatula
MTR_1g084980
I
0.843
OBART10G18190
Oryza barthii
OBART10G18190
I
0.843
OGLUM01G13370
Oryza glumaepatula
OGLUM01G13370
I
0.843
OBART01G11950
Oryza barthii
OBART01G11950
I
0.843
OB10G25310
Oryza brachyantha
OB10G25310
I
0.843
OB01G21830
Oryza brachyantha
OB01G21830
I
0.843
OB05G12600
Oryza brachyantha
OB05G12600
I
0.843
GLYMA14G03600
Glycine max
GLYMA14G03600
I
0.843
GLYMA10G28290
Glycine max
GLYMA10G28290
I
0.843
BGIOSGA031426
Oryza indica
BGIOSGA031426
I
0.843
Bo5g009910
Brassica oleracea
Bo5g009910
I
0.843
Bo8g111120
Brassica oleracea
Bo8g111120
I
0.843
BGIOSGA019157
Oryza indica
BGIOSGA019157
I
0.843
BGIOSGA001870
Oryza indica
BGIOSGA001870
I
0.843
AMTR_s00106p00127480
Amborella trichopoda
AMTR_s00106p00127480
I
0.843
PIF3
Arabidopsis thaliana
AT1G09530
D
0.843
Bra020017
Brassica rapa
Bra020017
I
0.843
Bra031668
Brassica rapa
Bra031668
I
0.843
GLYMA03G38675
Glycine max
GLYMA03G38675
I
0.843
GLYMA06G21495
Glycine max
GLYMA06G21495
I
0.843
GLYMA02G45150
Glycine max
GLYMA02G45150
I
0.843
PIF3
Arabidopsis lyrata
fgenesh2_kg.1__1002__AT1G09530.2
I
0.843
BRADI2G11100
Brachypodium distachyon
BRADI2G11100
I
0.843
BRADI3G33170
Brachypodium distachyon
BRADI3G33170
I
0.843
OGLUM05G02640
Oryza glumaepatula
OGLUM05G02640
I
0.843
LPERR05G02370
Leersia perrieri
LPERR05G02370
I
0.843
APG
Oryza sativa
OS05G0139100
I
0.843
OS10G0556200
Oryza sativa
OS10G0556200
I
0.843
OS01G0286100
Oryza sativa
OS01G0286100
I
0.843
ORUFI05G02750
Oryza rufipogon
ORUFI05G02750
I
0.843
ORGLA10G0133200
Oryza glaberrima
ORGLA10G0133200
I
0.843
OMERI05G02570
Oryza meridionalis
OMERI05G02570
I
0.843
POPTR_0005s00360
Populus trichocarpa
POPTR_0005s00360
I
0.843
Sb09g003090
Sorghum bicolor
Sb09g003090
I
0.843
PRUPE_ppa022963mg
Prunus persica
PRUPE_ppa022963mg
I
0.843
PRUPE_ppa001899mg
Prunus persica
PRUPE_ppa001899mg
I
0.843
POPTR_0013s00310
Populus trichocarpa
POPTR_0013s00310
I
0.843
ORGLA08G0194500
Oryza glaberrima
ORGLA08G0194500
I
0.843
PGSC0003DMG400018280
Solanum tuberosum
PGSC0003DMG400018280
I
0.843
ONIVA01G14150
Oryza nivara
ONIVA01G14150
I
0.843
OPUNC05G02500
Oryza punctata
OPUNC05G02500
I
0.843
ONIVA05G02540
Oryza nivara
ONIVA05G02540
I
0.843
OPUNC10G16560
Oryza punctata
OPUNC10G16560
I
0.843
OPUNC01G11630
Oryza punctata
OPUNC01G11630
I
0.843
30076.m004542
Ricinus communis
30076.m004542
I
0.841
Bra000283
Brassica rapa
Bra000283
I
0.839
Solyc01g090790.2
Solanum lycopersicum
Solyc01g090790.2
I
0.839
SapurV1A.0033s0400
Salix purpurea
SapurV1A.0033s0400
I
0.839
Bra000560
Brassica rapa
Bra000560
I
0.839
orange1.1g012387m.g
Citrus sinensis
orange1.1g012387m.g
I
0.839
Bra037312
Brassica rapa
Bra037312
I
0.839
30174.m008814
Ricinus communis
30174.m008814
I
0.839
MDP0000439540
Malus domestica
MDP0000439540
I
0.839
Solyc03g115540.1
Solanum lycopersicum
Solyc03g115540.1
I
0.839
PRUPE_ppa005629mg
Prunus persica
PRUPE_ppa005629mg
I
0.839
UNE10
Arabidopsis thaliana
AT4G00050
D
0.839
SELMODRAFT_29179
Selaginella moellendorffii
SELMODRAFT_29179
I
0.839
AMTR_s00110p00030150
Amborella trichopoda
AMTR_s00110p00030150
I
0.839
cassava13956.valid.m1
Manihot esculenta
cassava13956.valid.m1
I
0.839
PK20816.1
Cannabis sativa
PK20816.1
I
0.839
SELMODRAFT_39143
Selaginella moellendorffii
SELMODRAFT_39143
I
0.839
Bo3g042120
Brassica oleracea
Bo3g042120
I
0.839
TCM_005607
Theobroma cacao
TCM_005607
I
0.839
Thhalv10028687m.g
Eutrema salsugineum
Thhalv10028687m.g
I
0.839
Bo3g054850
Brassica oleracea
Bo3g054850
I
0.839
GLYMA01G15930
Glycine max
GLYMA01G15930
I
0.839
Ciclev10020053m.g
Citrus clementina
Ciclev10020053m.g
I
0.839
UNE10
Vitis vinifera
VIT_15s0021g02690
I
0.839
Eucgr.D02499
Eucalyptus grandis
Eucgr.D02499
I
0.839
GLYMA11G17120
Glycine max
GLYMA11G17120
I
0.839
Ca_22883
Cicer arietinum
Ca_22883
I
0.839
Aquca_035_00175
Aquilegia coerulea
Aquca_035_00175
I
0.839
Bostr.14547s0014
Boechera stricta
Bostr.14547s0014
I
0.839
Cagra.20893s0010
Capsella grandiflora
Cagra.20893s0010
I
0.839
GSMUA_Achr8G11070_001
Musa acuminata
GSMUA_Achr8G11070_001
I
0.839
Carubv10001567m.g
Capsella rubella
Carubv10001567m.g
I
0.839
evm.TU.supercontig_212.3
Carica papaya
evm.TU.supercontig_212.3
I
0.839
mgf005431m
Mimulus guttatus
mgf005431m
I
0.839
PGSC0003DMG400025976
Solanum tuberosum
PGSC0003DMG400025976
I
0.839
GLYMA01G32890
Glycine max
GLYMA01G32890
I
0.839
Gorai.008G106900
Gossypium raimondii
Gorai.008G106900
I
0.839
UNE10
Arabidopsis lyrata
scaffold_604304.1
I
0.839
Gorai.007G088300
Gossypium raimondii
Gorai.007G088300
I
0.839
GLYMA03G04000
Glycine max
GLYMA03G04000
I
0.839
gene25546-v1.0-hybrid
Fragaria vesca
gene25546-v1.0-hybrid
I
0.839
MTR_7g111320
Medicago truncatula
MTR_7g111320
I
0.839
PGSC0003DMG400024554
Solanum tuberosum
PGSC0003DMG400024554
I
0.839
POPTR_0002s14430
Populus trichocarpa
POPTR_0002s14430
I
0.839