CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.0050s0002
(
Capsella grandiflora
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Cagra.0050s0002
T049187_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PIF3
M00854_2.00
Arabidopsis thaliana
CACGTGSNN
NNSCACGTG
PBM
Franco-Zorrilla et al.(2014)
PIF3
0.843
0.700
PIF3
M00722_2.00
Arabidopsis thaliana
NCACRTN
NAYGTGN
PBM
Chang et al.(2013)
pTH8200
0.843
0.700
PK05451.1
M01120_2.00
Cannabis sativa
YCACGTGM
KCACGTGR
PBM
Lambert et al.(2019)
pTH10100
0.843
0.700
PIF3
M08045_2.00
Arabidopsis thaliana
HCACGTGGVH
DBCCACGTGD
ChIP-seq
Mathelier et al.(2014)
MA0560.1
0.843
0.700
PIF3
M09780_2.00
Arabidopsis thaliana
BDRRRVCACGTGRVSHCD
HGDSBYCACGTGBYYYHV
Transfac
Matys et al.(2006)
P$PIF3_01
0.843
0.700
PIF3
M09781_2.00
Arabidopsis thaliana
DDDVCCACGTGGVMVNB
VNBKBCCACGTGGBHHH
Transfac
Matys et al.(2006)
P$PIF3_02
0.843
0.700
UNE10
M01705_2.00
Arabidopsis thaliana
HCACGTGM
KCACGTGD
PBM
Weirauch et al.(2014)
pTH8112
0.839
0.540
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0050s0002.1.p
bHLH
234
283
STEVHKLSERKRRDEFNKKMRALQDLLPNCVKDDKASLLDEAIKYMRTLQ
Links
Other
bHLH
family TFs
Other
Capsella grandiflora
TFs
171 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy