Cagra.0751s0023 (Capsella grandiflora)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cagra.0751s0023 T049219_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
MYC3
M01712_2.00
Arabidopsis thaliana
MWYGTGNNNN

NNNNCACRWK
PBM
Weirauch et al.(2014)
pTH8854
0.914 1.000
MYC4
M01707_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8260
0.914 0.979
PK18474.1
M01127_2.00
Cannabis sativa
NRCACGTGCN

NGCACGTGYN
PBM
Lambert et al.(2019)
pTH10273
0.914 0.979
PK18474.1
M01768_2.00
Cannabis sativa
NCACGWK

MWCGTGN
PBM
Weirauch et al.(2014)
pTH9589
0.914 0.979
MYC2
M01699_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8083
0.914 0.958
OS01G0235700
M09894_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BHLH66_01
0.890 0.875
BHLH13
M01698_2.00
Arabidopsis thaliana
MCACGTGV

BCACGTGK
PBM
Weirauch et al.(2014)
pTH7565
0.879 0.896
AT2G22750
M06730_2.00
Arabidopsis thaliana
MRYGTKDNHCACGTGNN

NNCACGTGDNHMACRYK
Dap-seq
OMalley et al.(2016)
bHLH18_col_a
0.858 0.583
PK09702.1
M01124_2.00
Cannabis sativa
GCACGTGV

BCACGTGC
PBM
Lambert et al.(2019)
pTH11374
0.840 0.646
BHLH14
M09785_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AT4G00870_01
0.840 0.771
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0751s0023.1.p bHLH 426 473

Links

Other bHLH family TFs
Other Capsella grandiflora TFs

561 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AGL23 Arabidopsis thaliana AT1G65360 N 0.000
Al_scaffold_0001_74 Arabidopsis lyrata Al_scaffold_0001_74 N 0.000
Bo2g024870 Brassica oleracea Bo2g024870 N 0.000
Bo2g024900 Brassica oleracea Bo2g024900 N 0.000
Bo2g024910 Brassica oleracea Bo2g024910 N 0.000
Bostr.5325s0071 Boechera stricta Bostr.5325s0071 N 0.000
Bra020247 Brassica rapa Bra020247 N 0.000
Cagra.1968s0094 Capsella grandiflora Cagra.1968s0094 N 0.000
Carubv10010156m.g Capsella rubella Carubv10010156m.g N 0.000
Gorai.006G127800 Gossypium raimondii Gorai.006G127800 N 0.000
MTR_1g108580 Medicago truncatula MTR_1g108580 N 0.000
MTR_3g052920 Medicago truncatula MTR_3g052920 N 0.000
Pm021070 Prunus mume Pm021070 N 0.000
Pm021071 Prunus mume Pm021071 N 0.000
PRUPE_ppa017246mg Prunus persica PRUPE_ppa017246mg N 0.000
PRUPE_ppa026127mg Prunus persica PRUPE_ppa026127mg N 0.000
TCM_040735 Theobroma cacao TCM_040735 N 0.000
Thhalv10012100m.g Eutrema salsugineum Thhalv10012100m.g I 0.000
VIT_01s0010g01530 Vitis vinifera VIT_01s0010g01530 N 0.000
VIT_03s0088g00590 Vitis vinifera VIT_03s0088g00590 N 0.000
VIT_03s0088g00610 Vitis vinifera VIT_03s0088g00610 N 0.000