Cagra.1062s0003 (Capsella grandiflora)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cagra.1062s0003 T049232_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DYT1
M02654_2.00 		Arabidopsis thaliana
TCACGTGWYTBRYK
MRYVARWCACGTGA		 SELEX
Mathelier et al.(2014)
MA0580.1 		0.870 0.959
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1062s0003.1.p bHLH 31 79

Links

Other bHLH family TFs
Other Capsella grandiflora TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10007380m.g Capsella rubella Carubv10007380m.g I 0.914
Bra013519 Brassica rapa Bra013519 I 0.870
Bostr.10689s0082 Boechera stricta Bostr.10689s0082 I 0.870
Bo3g162600 Brassica oleracea Bo3g162600 I 0.870
Thhalv10027186m.g Eutrema salsugineum Thhalv10027186m.g I 0.870
DYT1 Arabidopsis lyrata fgenesh1_pg.C_scaffold_7001824 I 0.870
DYT1 Arabidopsis thaliana AT4G21330 D 0.870
MTR_4g091910 Medicago truncatula MTR_4g091910 I 0.857
Gorai.011G019900 Gossypium raimondii Gorai.011G019900 N 0.855
cassava15938.m1 Manihot esculenta cassava15938.m1 N 0.852
Ca_22008 Cicer arietinum Ca_22008 N 0.851
AMTR_s00019p00254380 Amborella trichopoda AMTR_s00019p00254380 I 0.845
Bo1g024080 Brassica oleracea Bo1g024080 I 0.840
AT5G57150 Arabidopsis thaliana AT5G57150 N 0.839
Bra006831 Brassica rapa Bra006831 N 0.839
Thhalv10014506m.g Eutrema salsugineum Thhalv10014506m.g N 0.839
Bra002756 Brassica rapa Bra002756 N 0.839
Cagra.1569s0024 Capsella grandiflora Cagra.1569s0024 N 0.839
Bostr.26833s0543 Boechera stricta Bostr.26833s0543 N 0.839
Bo9g130890 Brassica oleracea Bo9g130890 N 0.839
Bo3g019430 Brassica oleracea Bo3g019430 N 0.839
fgenesh2_kg.8__1627__AT5G57150.1 Arabidopsis lyrata fgenesh2_kg.8__1627__AT5G57150.1 N 0.839
Bra020462 Brassica rapa Bra020462 N 0.839