Cagra.1629s0040 (Capsella grandiflora)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cagra.1629s0040 T049257_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ILR3
M01714_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH7211 		0.914 0.980
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.1629s0040.1.p bHLH 73 123

Links

Other bHLH family TFs
Other Capsella grandiflora TFs

54 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10026758m.g Capsella rubella Carubv10026758m.g I 0.914
ILR3 Arabidopsis thaliana AT5G54680 D 0.914
ILR3 Arabidopsis lyrata fgenesh2_kg.8__1365__AT5G54680.1 I 0.914
Thhalv10014564m.g Eutrema salsugineum Thhalv10014564m.g I 0.914
Bra002964 Brassica rapa Bra002964 I 0.914
Bra022738 Brassica rapa Bra022738 I 0.914
Bostr.26833s0797 Boechera stricta Bostr.26833s0797 I 0.914
Cucsa.267130 Cucumis sativus Cucsa.267130 I 0.886
Cucsa.267170 Cucumis sativus Cucsa.267170 I 0.886
cassava37032.valid.m1 Manihot esculenta cassava37032.valid.m1 I 0.886
28166.m001054 Ricinus communis 28166.m001054 I 0.886
Cla001735 Citrullus lanatus Cla001735 I 0.886
Pm029465 Prunus mume Pm029465 I 0.886
cassava24574.valid.m1 Manihot esculenta cassava24574.valid.m1 I 0.886
cassava37031.valid.m1 Manihot esculenta cassava37031.valid.m1 I 0.886
gene03303-v1.0-hybrid Fragaria vesca gene03303-v1.0-hybrid I 0.886
MDP0000264803 Malus domestica MDP0000264803 I 0.886
orange1.1g026599m.g Citrus sinensis orange1.1g026599m.g I 0.886
SapurV1A.0712s0010 Salix purpurea SapurV1A.0712s0010 I 0.886
PK23013.1 Cannabis sativa PK23013.1 I 0.886
Lus10043076.g Linum usitatissimum Lus10043076.g I 0.886
Lus10011167.g Linum usitatissimum Lus10011167.g I 0.886
Eucgr.F03420 Eucalyptus grandis Eucgr.F03420 I 0.886
evm.TU.supercontig_97.78 Carica papaya evm.TU.supercontig_97.78 I 0.886
gene24654-v1.0-hybrid Fragaria vesca gene24654-v1.0-hybrid I 0.886
Ciclev10009354m.g Citrus clementina Ciclev10009354m.g I 0.886
Ca_16355 Cicer arietinum Ca_16355 I 0.886
POPTR_0001s44230 Populus trichocarpa POPTR_0001s44230 I 0.886
Ca_06956 Cicer arietinum Ca_06956 I 0.886
MTR_4g081370 Medicago truncatula MTR_4g081370 I 0.886
MTR_2g082640 Medicago truncatula MTR_2g082640 I 0.886
GLYMA06G41620 Glycine max GLYMA06G41620 I 0.886
PRUPE_ppa009077mg Prunus persica PRUPE_ppa009077mg I 0.886
POPTR_0011s13580 Populus trichocarpa POPTR_0011s13580 I 0.886
TCM_031118 Theobroma cacao TCM_031118 I 0.886
PRUPE_ppa010730mg Prunus persica PRUPE_ppa010730mg I 0.883
GLYMA12G34300 Glycine max GLYMA12G34300 I 0.875
Bra029011 Brassica rapa Bra029011 I 0.875
GSMUA_Achr8G33180_001 Musa acuminata GSMUA_Achr8G33180_001 I 0.870
Bo3g021940 Brassica oleracea Bo3g021940 I 0.866
VIT_12s0059g02650 Vitis vinifera VIT_12s0059g02650 I 0.863
GSMUA_Achr3G23080_001 Musa acuminata GSMUA_Achr3G23080_001 I 0.863
fgenesh1_pg.scaffold_13000185 Physcomitrella patens fgenesh1_pg.scaffold_13000185 I 0.857
e_gw1.229.33.1 Physcomitrella patens e_gw1.229.33.1 I 0.857
estExt_gwp_gw1.C_2460032 Physcomitrella patens estExt_gwp_gw1.C_2460032 I 0.857
mgf009119m Mimulus guttatus mgf009119m I 0.851
Aquca_005_00425 Aquilegia coerulea Aquca_005_00425 I 0.850
GLYMA13G36260 Glycine max GLYMA13G36260 I 0.849
SELMODRAFT_165311 Selaginella moellendorffii SELMODRAFT_165311 I 0.844
GLYMA15G06860 Glycine max GLYMA15G06860 I 0.844
SELMODRAFT_165556 Selaginella moellendorffii SELMODRAFT_165556 I 0.844
TCM_030082 Theobroma cacao TCM_030082 I 0.844
GLYMA15G06803 Glycine max GLYMA15G06803 I 0.844
GSMUA_Achr11G14790_001 Musa acuminata GSMUA_Achr11G14790_001 I 0.840