Carubv10006445m.g (Capsella rubella)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Carubv10006445m.g T049350_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BIM3
M01711_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8591 		0.914 0.962
BIM3
M06741_2.00 		Arabidopsis thaliana
DYGTSHNNVKCACGTGMY
RKCACGTGMBNNDSACRH		 Dap-seq
OMalley et al.(2016)
BIM3_col_a 		0.914 0.962
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10006445m bHLH 34 86

Links

Other bHLH family TFs
Other Capsella rubella TFs

29 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BIM3 Arabidopsis thaliana AT5G38860 D 0.914
BIM3 Arabidopsis lyrata scaffold_704174.1 I 0.914
Cagra.2539s0002 Capsella grandiflora Cagra.2539s0002 I 0.914
Bostr.17775s0015 Boechera stricta Bostr.17775s0015 I 0.890
Cucsa.174600 Cucumis sativus Cucsa.174600 I 0.861
Eucgr.I02069 Eucalyptus grandis Eucgr.I02069 I 0.861
Gorai.001G197500 Gossypium raimondii Gorai.001G197500 I 0.861
Lus10004630.g Linum usitatissimum Lus10004630.g I 0.861
PK00238.1 Cannabis sativa PK00238.1 I 0.861
Thhalv10027863m.g Eutrema salsugineum Thhalv10027863m.g I 0.861
SapurV1A.2517s0020 Salix purpurea SapurV1A.2517s0020 I 0.861
SapurV1A.0274s0040 Salix purpurea SapurV1A.0274s0040 I 0.861
Lus10026684.g Linum usitatissimum Lus10026684.g I 0.861
cassava15.valid.m1 Manihot esculenta cassava15.valid.m1 I 0.861
GLYMA08G28010 Glycine max GLYMA08G28010 I 0.861
cassava14.valid.m1 Manihot esculenta cassava14.valid.m1 I 0.861
GLYMA18G51080 Glycine max GLYMA18G51080 I 0.861
MTR_5g048350 Medicago truncatula MTR_5g048350 I 0.861
POPTR_0004s11180 Populus trichocarpa POPTR_0004s11180 I 0.861
TCM_019015 Theobroma cacao TCM_019015 I 0.861
BIM3 Vitis vinifera VIT_14s0083g00930 I 0.861
Ca_22043 Cicer arietinum Ca_22043 I 0.861
29790.m000843 Ricinus communis 29790.m000843 I 0.861
POPTR_0017s13610 Populus trichocarpa POPTR_0017s13610 I 0.858
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I 0.840
Sb07g028860 Sorghum bicolor Sb07g028860 I 0.838
Si013622m.g Setaria italica Si013622m.g I 0.838
Pavir.Fb01833 Panicum virgatum Pavir.Fb01833 I 0.838
Pavir.J38910 Panicum virgatum Pavir.J38910 I 0.838