Carubv10007002m.g (Capsella rubella)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Carubv10007002m.g T049356_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G22750
M06730_2.00 		Arabidopsis thaliana
MRYGTKDNHCACGTGNN
NNCACGTGDNHMACRYK		 Dap-seq
OMalley et al.(2016)
bHLH18_col_a 		0.844 0.480
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10007002m bHLH 245 294

Links

Other bHLH family TFs
Other Capsella rubella TFs

187 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.1225s0009 Capsella grandiflora Cagra.1225s0009 I 0.914
Lus10019247.g Linum usitatissimum Lus10019247.g I 0.864
MLOC_64735 Hordeum vulgare MLOC_64735 I 0.862
PRUPE_ppa007561mg Prunus persica PRUPE_ppa007561mg I 0.862
F775_11371 Aegilops tauschii F775_11371 I 0.862
Traes_4BS_34AF89ACE Triticum aestivum Traes_4BS_34AF89ACE I 0.862
TRIUR3_26880 Triticum urartu TRIUR3_26880 I 0.862
Lus10011578.g Linum usitatissimum Lus10011578.g I 0.862
Pm002304 Prunus mume Pm002304 I 0.862
BRADI1G10170 Brachypodium distachyon BRADI1G10170 I 0.862
Traes_4DS_7F3D9E4D9 Triticum aestivum Traes_4DS_7F3D9E4D9 I 0.862
Traes_4AL_F3571097B Triticum aestivum Traes_4AL_F3571097B I 0.862
Bo1g017080 Brassica oleracea Bo1g017080 N 0.850
Bo1g017090 Brassica oleracea Bo1g017090 N 0.850
Pavir.J05386 Panicum virgatum Pavir.J05386 I 0.849
OBART07G06150 Oryza barthii OBART07G06150 I 0.849
ORUFI07G06050 Oryza rufipogon ORUFI07G06050 I 0.849
OGLUM07G05680 Oryza glumaepatula OGLUM07G05680 I 0.849
OBART03G37850 Oryza barthii OBART03G37850 I 0.849
Gorai.012G031100 Gossypium raimondii Gorai.012G031100 I 0.849
LPERR07G05350 Leersia perrieri LPERR07G05350 I 0.849
BHLH089 Oryza sativa OS03G0802900 I 0.849
OB07G14580 Oryza brachyantha OB07G14580 I 0.849
Pavir.J31567 Panicum virgatum Pavir.J31567 I 0.849
OMERI03G35020 Oryza meridionalis OMERI03G35020 I 0.849
BGIOSGA024674 Oryza indica BGIOSGA024674 I 0.849
OPUNC03G34870 Oryza punctata OPUNC03G34870 I 0.849
OPUNC07G05880 Oryza punctata OPUNC07G05880 I 0.849
ONIVA07G05030 Oryza nivara ONIVA07G05030 I 0.849
ORGLA03G0344800 Oryza glaberrima ORGLA03G0344800 I 0.849
LPERR03G32000 Leersia perrieri LPERR03G32000 I 0.849
ORGLA07G0051400 Oryza glaberrima ORGLA07G0051400 I 0.849
OMERI07G04150 Oryza meridionalis OMERI07G04150 I 0.849
OLONG_024091 Oryza longistaminata OLONG_024091 I 0.849
OS07G0193800 Oryza sativa OS07G0193800 I 0.849
GRMZM2G137358 Zea mays GRMZM2G137358 I 0.849
Si037131m.g Setaria italica Si037131m.g I 0.849
BGIOSGA009622 Oryza indica BGIOSGA009622 I 0.849
GRMZM2G008898 Zea mays GRMZM2G008898 I 0.849
Si030790m.g Setaria italica Si030790m.g I 0.849
GSMUA_Achr7G01750_001 Musa acuminata GSMUA_Achr7G01750_001 I 0.849
GSMUA_Achr4G17570_001 Musa acuminata GSMUA_Achr4G17570_001 I 0.849
Sb02g005713 Sorghum bicolor Sb02g005713 I 0.849
Sb01g004710 Sorghum bicolor Sb01g004710 I 0.849
Pavir.Bb00642 Panicum virgatum Pavir.Bb00642 I 0.849
BRADI1G54690 Brachypodium distachyon BRADI1G54690 I 0.849
GSMUA_Achr9G11020_001 Musa acuminata GSMUA_Achr9G11020_001 I 0.849
Carubv10007459m.g Capsella rubella Carubv10007459m.g I 0.847
Cagra.1225s0008 Capsella grandiflora Cagra.1225s0008 I 0.847
Lus10020503.g Linum usitatissimum Lus10020503.g I 0.845
chr5.CM0158.350.nd Lotus japonicus chr5.CM0158.350.nd I 0.845
chr2.CM0021.410.nc Lotus japonicus chr2.CM0021.410.nc I 0.845
Lus10012457.g Linum usitatissimum Lus10012457.g I 0.845
Cucsa.103630 Cucumis sativus Cucsa.103630 I 0.845
chr3.LjT47G05.50.nc Lotus japonicus chr3.LjT47G05.50.nc I 0.845
Solyc01g106460.2 Solanum lycopersicum Solyc01g106460.2 I 0.844
MDP0000159571 Malus domestica MDP0000159571 I 0.844
SELMODRAFT_425336 Selaginella moellendorffii SELMODRAFT_425336 I 0.844
MDP0000170202 Malus domestica MDP0000170202 I 0.844
TCM_037455 Theobroma cacao TCM_037455 I 0.844
TCM_000894 Theobroma cacao TCM_000894 I 0.844
AT2G22750 Arabidopsis thaliana AT2G22750 D 0.844
Gorai.001G017900 Gossypium raimondii Gorai.001G017900 I 0.844
Gorai.003G034600 Gossypium raimondii Gorai.003G034600 I 0.844
cassava10497.m1 Manihot esculenta cassava10497.m1 I 0.844
Aquca_020_00579 Aquilegia coerulea Aquca_020_00579 I 0.844
evm.TU.supercontig_82.59 Carica papaya evm.TU.supercontig_82.59 I 0.844
Eucgr.H02389 Eucalyptus grandis Eucgr.H02389 I 0.844
Ciclev10008008m.g Citrus clementina Ciclev10008008m.g I 0.844
evm.TU.supercontig_20.63 Carica papaya evm.TU.supercontig_20.63 I 0.844
29739.m003684 Ricinus communis 29739.m003684 I 0.844
Gorai.007G229000 Gossypium raimondii Gorai.007G229000 I 0.844
Ca_02264 Cicer arietinum Ca_02264 I 0.844
VIT_11s0016g00380 Vitis vinifera VIT_11s0016g00380 I 0.844
AMTR_s00129p00124210 Amborella trichopoda AMTR_s00129p00124210 I 0.844
orange1.1g010045m.g Citrus sinensis orange1.1g010045m.g I 0.844
Cla014288 Citrullus lanatus Cla014288 I 0.844
Gorai.008G087600 Gossypium raimondii Gorai.008G087600 I 0.844
Gorai.009G038500 Gossypium raimondii Gorai.009G038500 I 0.844
BGIOSGA021743 Oryza indica BGIOSGA021743 I 0.844
PGSC0003DMG400005101 Solanum tuberosum PGSC0003DMG400005101 I 0.844
MTR_5g014520 Medicago truncatula MTR_5g014520 I 0.844
PK08539.1 Cannabis sativa PK08539.1 I 0.844
LPERR06G05570 Leersia perrieri LPERR06G05570 I 0.844
OBART06G06000 Oryza barthii OBART06G06000 I 0.844
OGLUM06G06280 Oryza glumaepatula OGLUM06G06280 I 0.844
OMERI06G07190 Oryza meridionalis OMERI06G07190 I 0.844
OLONG_013313 Oryza longistaminata OLONG_013313 I 0.844
GSMUA_Achr9G18080_001 Musa acuminata GSMUA_Achr9G18080_001 I 0.844
GSMUA_Achr3G10120_001 Musa acuminata GSMUA_Achr3G10120_001 I 0.844
Bra039924 Brassica rapa Bra039924 I 0.844
Bra030210 Brassica rapa Bra030210 I 0.844
Bo4g150960 Brassica oleracea Bo4g150960 I 0.844
PDK_20s1394471g002 Phoenix dactylifera PDK_20s1394471g002 I 0.844
GLYMA11G04681 Glycine max GLYMA11G04681 I 0.844
GLYMA01G40620 Glycine max GLYMA01G40620 I 0.844
SapurV1A.0249s0140 Salix purpurea SapurV1A.0249s0140 I 0.844
Thhalv10000426m.g Eutrema salsugineum Thhalv10000426m.g I 0.844
ORUFI06G06220 Oryza rufipogon ORUFI06G06220 I 0.844
OS06G0193400 Oryza sativa OS06G0193400 I 0.844
POPTR_0006s13790 Populus trichocarpa POPTR_0006s13790 I 0.844
OPUNC06G05770 Oryza punctata OPUNC06G05770 I 0.844
Eucgr.H02390 Eucalyptus grandis Eucgr.H02390 I 0.844
ONIVA06G06960 Oryza nivara ONIVA06G06960 I 0.844
MDP0000291132 Malus domestica MDP0000291132 I 0.841
orange1.1g037441m.g Citrus sinensis orange1.1g037441m.g I 0.841
LjT17L12.80.nd Lotus japonicus LjT17L12.80.nd I 0.841
PDK_20s1524891g002 Phoenix dactylifera PDK_20s1524891g002 I 0.841
gene05610-v1.0-hybrid Fragaria vesca gene05610-v1.0-hybrid I 0.841
gene05612-v1.0-hybrid Fragaria vesca gene05612-v1.0-hybrid I 0.841
MDP0000318216 Malus domestica MDP0000318216 I 0.841
Eucgr.I00634 Eucalyptus grandis Eucgr.I00634 I 0.841
MDP0000502440 Malus domestica MDP0000502440 I 0.841
Eucgr.I02518 Eucalyptus grandis Eucgr.I02518 I 0.841
evm.TU.supercontig_129.37 Carica papaya evm.TU.supercontig_129.37 I 0.841
orange1.1g026436m.g Citrus sinensis orange1.1g026436m.g I 0.841
chr2.CM0021.380.nc Lotus japonicus chr2.CM0021.380.nc I 0.841
gene07355-v1.0-hybrid Fragaria vesca gene07355-v1.0-hybrid I 0.841
SapurV1A.0279s0180 Salix purpurea SapurV1A.0279s0180 I 0.841
MDP0000174149 Malus domestica MDP0000174149 I 0.841
SapurV1A.0019s0910 Salix purpurea SapurV1A.0019s0910 I 0.841
orange1.1g021208m.g Citrus sinensis orange1.1g021208m.g I 0.841
Pavir.J35103 Panicum virgatum Pavir.J35103 I 0.841
Lus10003488.g Linum usitatissimum Lus10003488.g I 0.841
PK09122.1 Cannabis sativa PK09122.1 I 0.841
Gorai.007G228900 Gossypium raimondii Gorai.007G228900 I 0.841
Gorai.002G211500 Gossypium raimondii Gorai.002G211500 I 0.841
Pavir.J01849 Panicum virgatum Pavir.J01849 I 0.841
Lus10039639.g Linum usitatissimum Lus10039639.g I 0.841
Gorai.003G034700 Gossypium raimondii Gorai.003G034700 I 0.841
PK11573.1 Cannabis sativa PK11573.1 I 0.841
SapurV1A.3034s0010 Salix purpurea SapurV1A.3034s0010 I 0.841
VIT_03s0088g01240 Vitis vinifera VIT_03s0088g01240 I 0.841
OS03G0725800 Oryza sativa OS03G0725800 I 0.841
POPTR_0001s29400 Populus trichocarpa POPTR_0001s29400 I 0.841
ORUFI03G33950 Oryza rufipogon ORUFI03G33950 I 0.841
ORGLA03G0295100 Oryza glaberrima ORGLA03G0295100 I 0.841
OPUNC03G29750 Oryza punctata OPUNC03G29750 I 0.841
POPTR_0005s09810 Populus trichocarpa POPTR_0005s09810 I 0.841
POPTR_0009s08500 Populus trichocarpa POPTR_0009s08500 I 0.841
SELMODRAFT_34848 Selaginella moellendorffii SELMODRAFT_34848 I 0.841
SELMODRAFT_48361 Selaginella moellendorffii SELMODRAFT_48361 I 0.841
Sb01g009590 Sorghum bicolor Sb01g009590 I 0.841
PRUPE_ppa017640mg Prunus persica PRUPE_ppa017640mg I 0.841
PRUPE_ppa008130mg Prunus persica PRUPE_ppa008130mg I 0.841
ONIVA03G34090 Oryza nivara ONIVA03G34090 I 0.841
OMERI03G29350 Oryza meridionalis OMERI03G29350 I 0.841
GLYMA11G04690 Glycine max GLYMA11G04690 I 0.841
GRMZM2G019806 Zea mays GRMZM2G019806 I 0.841
GLYMA07G30420 Glycine max GLYMA07G30420 I 0.841
fgenesh2_kg.4__196__AT2G22750.1 Arabidopsis lyrata fgenesh2_kg.4__196__AT2G22750.1 I 0.841
Bo3g088300 Brassica oleracea Bo3g088300 I 0.841
GRMZM2G082343 Zea mays GRMZM2G082343 I 0.841
GSMUA_Achr2G08590_001 Musa acuminata GSMUA_Achr2G08590_001 I 0.841
OGLUM03G32210 Oryza glumaepatula OGLUM03G32210 I 0.841
OBART03G32580 Oryza barthii OBART03G32580 I 0.841
LPERR03G27220 Leersia perrieri LPERR03G27220 I 0.841
GSMUA_AchrUn_randomG15440_001 Musa acuminata GSMUA_AchrUn_randomG15440_001 I 0.841
Si036393m.g Setaria italica Si036393m.g I 0.841
TCM_000895 Theobroma cacao TCM_000895 I 0.841
cassava20178.m1 Manihot esculenta cassava20178.m1 I 0.841
cassava35671.valid.m1 Manihot esculenta cassava35671.valid.m1 I 0.841
cassava18197.valid.m1 Manihot esculenta cassava18197.valid.m1 I 0.841
cassava16019.m1 Manihot esculenta cassava16019.m1 I 0.841
29804.m001498 Ricinus communis 29804.m001498 I 0.841
cassava37087.valid.m1 Manihot esculenta cassava37087.valid.m1 I 0.841
Cucsa.218800 Cucumis sativus Cucsa.218800 I 0.841
Ciclev10027158m.g Citrus clementina Ciclev10027158m.g I 0.841
Ciclev10027504m.g Citrus clementina Ciclev10027504m.g I 0.841
Carubv10025041m.g Capsella rubella Carubv10025041m.g I 0.841
Cagra.5392s0006 Capsella grandiflora Cagra.5392s0006 I 0.841
Aquca_010_00012 Aquilegia coerulea Aquca_010_00012 I 0.841
Ciclev10028925m.g Citrus clementina Ciclev10028925m.g I 0.841
28179.m000479 Ricinus communis 28179.m000479 I 0.841
VIT_00s0927g00010 Vitis vinifera VIT_00s0927g00010 I 0.841
Bra013128 Brassica rapa Bra013128 I 0.841
VIT_00s0824g00020 Vitis vinifera VIT_00s0824g00020 I 0.841
AMTR_s00033p00078670 Amborella trichopoda AMTR_s00033p00078670 I 0.841
TCM_006357 Theobroma cacao TCM_006357 I 0.841
VIT_07s0205g00160 Vitis vinifera VIT_07s0205g00160 I 0.841
Cla000123 Citrullus lanatus Cla000123 I 0.841
Pm021008 Prunus mume Pm021008 I 0.841
28179.m000478 Ricinus communis 28179.m000478 I 0.841
BGIOSGA013493 Oryza indica BGIOSGA013493 I 0.841
Pm002305 Prunus mume Pm002305 I 0.841
Gorai.012G161900 Gossypium raimondii Gorai.012G161900 I 0.838
Bo1g017100 Brassica oleracea Bo1g017100 N 0.838