Carubv10009382m.g (Capsella rubella)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Carubv10009382m.g T049367_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT2G42280
M06733_2.00
Arabidopsis thaliana
DNCMACTTGYH

DRCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH130_col_a
0.866 0.784
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10009382m bHLH 320 370

Links

Other bHLH family TFs
Other Capsella rubella TFs

99 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AT2G42280 Arabidopsis thaliana AT2G42280 D 0.866
PGSC0003DMG400006569 Solanum tuberosum PGSC0003DMG400006569 I 0.856
TRIUR3_16394 Triticum urartu TRIUR3_16394 I 0.894
TRIUR3_33816 Triticum urartu TRIUR3_33816 I 0.857
VIT_05s0124g00240 Vitis vinifera VIT_05s0124g00240 I 0.856
VIT_06s0004g01740 Vitis vinifera VIT_06s0004g01740 I 0.866
Ca_07284 Cicer arietinum Ca_07284 I 0.879
Ca_14007 Cicer arietinum Ca_14007 I 0.914
Pm007619 Prunus mume Pm007619 I 0.856
30149.m000231 Ricinus communis 30149.m000231 I 0.853
30169.m006403 Ricinus communis 30169.m006403 I 0.866
cassava35513.valid.m1 Manihot esculenta cassava35513.valid.m1 I 0.853
Traes_6DL_62A15AED6 Triticum aestivum Traes_6DL_62A15AED6 I 0.894
Traes_6BL_868408DFC Triticum aestivum Traes_6BL_868408DFC I 0.894
POPTR_0003s22290 Populus trichocarpa POPTR_0003s22290 I 0.866
PRUPE_ppa025178mg Prunus persica PRUPE_ppa025178mg I 0.856
Sb03g042860 Sorghum bicolor Sb03g042860 I 0.854
scaffold_403077.1 Arabidopsis lyrata scaffold_403077.1 I 0.866
Si001123m.g Setaria italica Si001123m.g I 0.854
Solyc09g098110.2 Solanum lycopersicum Solyc09g098110.2 I 0.856
TCM_020066 Theobroma cacao TCM_020066 I 0.856
Traes_3AL_B68C491B0 Triticum aestivum Traes_3AL_B68C491B0 I 0.857
TRAES3BF135900010CFD_g Triticum aestivum TRAES3BF135900010CFD_g I 0.857
Traes_6AL_9437F730F Triticum aestivum Traes_6AL_9437F730F I 0.894
Cucsa.094340 Cucumis sativus Cucsa.094340 I 0.914
mgf005043m Mimulus guttatus mgf005043m I 0.856
Bostr.25219s0385 Boechera stricta Bostr.25219s0385 I 0.914
MDP0000273574 Malus domestica MDP0000273574 I 0.856
MDP0000307685 Malus domestica MDP0000307685 I 0.866
orange1.1g038558m.g Citrus sinensis orange1.1g038558m.g I 0.894
Pavir.J01306 Panicum virgatum Pavir.J01306 I 0.854
SapurV1A.0009s0400 Salix purpurea SapurV1A.0009s0400 I 0.866
SapurV1A.0529s0060 Salix purpurea SapurV1A.0529s0060 I 0.856
Thhalv10008050m.g Eutrema salsugineum Thhalv10008050m.g I 0.914
Thhalv10016998m.g Eutrema salsugineum Thhalv10016998m.g I 0.856
PK07850.1 Cannabis sativa PK07850.1 I 0.856
chr5.LjT42F22.20.nc Lotus japonicus chr5.LjT42F22.20.nc I 0.856
Lus10026733.g Linum usitatissimum Lus10026733.g I 0.911
Lus10025518.g Linum usitatissimum Lus10025518.g I 0.911
Bostr.25993s0461 Boechera stricta Bostr.25993s0461 I 0.856
Bostr.25993s0551 Boechera stricta Bostr.25993s0551 I 0.845
Cagra.1671s0210 Capsella grandiflora Cagra.1671s0210 I 0.914
Cagra.2636s0012 Capsella grandiflora Cagra.2636s0012 I 0.866
Cagra.3706s0004 Capsella grandiflora Cagra.3706s0004 I 0.856
Carubv10023498m.g Capsella rubella Carubv10023498m.g I 0.866
Carubv10023683m.g Capsella rubella Carubv10023683m.g I 0.856
Ciclev10020681m.g Citrus clementina Ciclev10020681m.g I 0.894
Eucgr.A00213 Eucalyptus grandis Eucgr.A00213 I 0.911
Gorai.011G144600 Gossypium raimondii Gorai.011G144600 I 0.856
PDK_20s1546591g001 Phoenix dactylifera PDK_20s1546591g001 I 0.891
BHLH128 Arabidopsis thaliana AT1G05805 I 0.914
F775_24576 Aegilops tauschii F775_24576 I 0.857
F775_26506 Aegilops tauschii F775_26506 I 0.894
fgenesh2_kg.1__542__AT1G05805.1 Arabidopsis lyrata fgenesh2_kg.1__542__AT1G05805.1 I 0.914
fgenesh2_kg.4__2475__AT2G43140.1 Arabidopsis lyrata fgenesh2_kg.4__2475__AT2G43140.1 I 0.856
GLYMA20G39220 Glycine max GLYMA20G39220 I 0.856
GRMZM2G114873 Zea mays GRMZM2G114873 I 0.854
GSMUA_Achr1G27710_001 Musa acuminata GSMUA_Achr1G27710_001 I 0.879
GSMUA_Achr8G01370_001 Musa acuminata GSMUA_Achr8G01370_001 I 0.879
GSMUA_Achr8G32130_001 Musa acuminata GSMUA_Achr8G32130_001 I 0.879
LPERR01G35240 Leersia perrieri LPERR01G35240 I 0.857
BRADI3G48070 Brachypodium distachyon BRADI3G48070 I 0.894
BRADI2G57800 Brachypodium distachyon BRADI2G57800 I 0.857
AT2G43140 Arabidopsis thaliana AT2G43140 I 0.856
BGIOSGA004992 Oryza indica BGIOSGA004992 I 0.857
BGIOSGA016651 Oryza indica BGIOSGA016651 I 0.894
Bo3g036400 Brassica oleracea Bo3g036400 I 0.856
Bo4g019620 Brassica oleracea Bo4g019620 I 0.856
Bo5g006980 Brassica oleracea Bo5g006980 I 0.911
Bo5g007030 Brassica oleracea Bo5g007030 I 0.911
Bra000291 Brassica rapa Bra000291 I 0.856
Bra004748 Brassica rapa Bra004748 I 0.856
Bra015456 Brassica rapa Bra015456 I 0.911
LPERR04G13560 Leersia perrieri LPERR04G13560 I 0.894
LPERR08G16800 Leersia perrieri LPERR08G16800 I 0.866
LPERR09G10800 Leersia perrieri LPERR09G10800 I 0.866
OMERI04G14260 Oryza meridionalis OMERI04G14260 I 0.894
ONIVA01G45730 Oryza nivara ONIVA01G45730 I 0.857
ONIVA04G15000 Oryza nivara ONIVA04G15000 I 0.894
OPUNC01G39450 Oryza punctata OPUNC01G39450 I 0.857
OPUNC04G14700 Oryza punctata OPUNC04G14700 I 0.894
ORGLA01G0346300 Oryza glaberrima ORGLA01G0346300 I 0.857
ORGLA04G0140000 Oryza glaberrima ORGLA04G0140000 I 0.894
ORUFI01G44010 Oryza rufipogon ORUFI01G44010 I 0.857
ORUFI04G18350 Oryza rufipogon ORUFI04G18350 I 0.894
OS01G0900800 Oryza sativa OS01G0900800 I 0.857
OMERI01G37660 Oryza meridionalis OMERI01G37660 I 0.857
OLONG_004619 Oryza longistaminata OLONG_004619 I 0.857
MLOC_12058 Hordeum vulgare MLOC_12058 I 0.894
MLOC_20318 Hordeum vulgare MLOC_20318 I 0.857
MTR_1g116790 Medicago truncatula MTR_1g116790 I 0.914
MTR_7g092540 Medicago truncatula MTR_7g092540 I 0.840
OB01G49420 Oryza brachyantha OB01G49420 I 0.857
OB04G24170 Oryza brachyantha OB04G24170 I 0.894
OBART01G40680 Oryza barthii OBART01G40680 I 0.857
OBART04G16900 Oryza barthii OBART04G16900 I 0.894
OGLUM01G44860 Oryza glumaepatula OGLUM01G44860 I 0.857
OGLUM04G16920 Oryza glumaepatula OGLUM04G16920 I 0.894
OS04G0489600 Oryza sativa OS04G0489600 I 0.894