CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10023056m.g
(
Capsella rubella
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Carubv10023056m.g
T049425_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BHLH10
M06731_2.00
Arabidopsis thaliana
YCACCGACANHDNH
DNHDNTGTCGGTGR
Dap-seq
OMalley et al.(2016)
bHLH10_col_a
0.914
0.920
BHLH10
M06732_2.00
Arabidopsis thaliana
NDBCACCGACANH
DNTGTCGGTGVHN
Dap-seq
OMalley et al.(2016)
bHLH10_colamp_a
0.914
0.920
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10023056m
bHLH
289
338
KKSTTSPTERERRVHFNDRFLDLKKLIPNPTKIDRASIVGEAIDYIKELL
Links
Other
bHLH
family TFs
Other
Capsella rubella
TFs
4 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bostr.24513s0102
Boechera stricta
Bostr.24513s0102
I
0.914
BHLH10
Arabidopsis thaliana
AT2G31220
D
0.914
Cagra.6952s0001
Capsella grandiflora
Cagra.6952s0001
I
0.914
fgenesh2_kg.4__1109__AT2G31220.1
Arabidopsis lyrata
fgenesh2_kg.4__1109__AT2G31220.1
I
0.902