Carubv10028625m.g (Capsella rubella)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Carubv10028625m.g T049461_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10028625m bHLH 148 191

Links

Other bHLH family TFs
Other Capsella rubella TFs

180 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
28152.m000914 Ricinus communis 28152.m000914 N 0.873
30170.m013749 Ricinus communis 30170.m013749 N 0.873
Al_scaffold_0797_1 Arabidopsis lyrata Al_scaffold_0797_1 N 0.914
AMTR_s00164p00062120 Amborella trichopoda AMTR_s00164p00062120 N 0.873
Aquca_017_00066 Aquilegia coerulea Aquca_017_00066 N 0.873
Aquca_042_00162 Aquilegia coerulea Aquca_042_00162 N 0.873
Aquca_042_00163 Aquilegia coerulea Aquca_042_00163 N 0.873
AT2G14760 Arabidopsis thaliana AT2G14760 N 0.873
BGIOSGA010239 Oryza indica BGIOSGA010239 N 0.861
BGIOSGA011251 Oryza indica BGIOSGA011251 N 0.870
BGIOSGA023988 Oryza indica BGIOSGA023988 N 0.873
BGIOSGA035917 Oryza indica BGIOSGA035917 N 0.873
BHLH139 Arabidopsis thaliana AT5G43175 N 0.914
BHLH85 Arabidopsis thaliana AT4G33880 N 0.873
Bo1g007780 Brassica oleracea Bo1g007780 N 0.873
Bo3g169400 Brassica oleracea Bo3g169400 N 0.873
Bo7g116460 Brassica oleracea Bo7g116460 N 0.873
Bostr.2199s0029 Boechera stricta Bostr.2199s0029 N 0.873
Bostr.3148s0158 Boechera stricta Bostr.3148s0158 N 0.914
Bostr.7867s1234 Boechera stricta Bostr.7867s1234 N 0.873
Bra011476 Brassica rapa Bra011476 N 0.873
Bra034587 Brassica rapa Bra034587 N 0.873
Bra036969 Brassica rapa Bra036969 N 0.873
BRADI1G14600 Brachypodium distachyon BRADI1G14600 N 0.873
BRADI1G22960 Brachypodium distachyon BRADI1G22960 N 0.841
BRADI4G03070 Brachypodium distachyon BRADI4G03070 N 0.873
Cagra.1103s0007 Capsella grandiflora Cagra.1103s0007 N 0.914
Cagra.1305s0010 Capsella grandiflora Cagra.1305s0010 N 0.873
Cagra.9228s0001 Capsella grandiflora Cagra.9228s0001 N 0.873
Carubv10006623m.g Capsella rubella Carubv10006623m.g N 0.873
Carubv10015484m.g Capsella rubella Carubv10015484m.g N 0.873
cassava14986.m1 Manihot esculenta cassava14986.m1 N 0.873
cassava20440.m1 Manihot esculenta cassava20440.m1 N 0.873
cassava25589.m1 Manihot esculenta cassava25589.m1 N 0.873
cassava38950.m1 Manihot esculenta cassava38950.m1 N 0.873
Ca_01588 Cicer arietinum Ca_01588 N 0.873
Ca_05644 Cicer arietinum Ca_05644 N 0.873
Ca_11909 Cicer arietinum Ca_11909 N 0.873
Ca_18366 Cicer arietinum Ca_18366 N 0.873
chr1.CM0088.610.nd Lotus japonicus chr1.CM0088.610.nd N 0.873
Ciclev10003450m.g Citrus clementina Ciclev10003450m.g N 0.873
Ciclev10030309m.g Citrus clementina Ciclev10030309m.g N 0.873
Cla016346 Citrullus lanatus Cla016346 N 0.873
Cla020918 Citrullus lanatus Cla020918 N 0.873
Cla022968 Citrullus lanatus Cla022968 N 0.873
Cucsa.097490 Cucumis sativus Cucsa.097490 N 0.873
Cucsa.219180 Cucumis sativus Cucsa.219180 N 0.873
Cucsa.352750 Cucumis sativus Cucsa.352750 N 0.873
Eucgr.F02259 Eucalyptus grandis Eucgr.F02259 N 0.870
Eucgr.G01234 Eucalyptus grandis Eucgr.G01234 N 0.870
Eucgr.I01069 Eucalyptus grandis Eucgr.I01069 N 0.873
evm.TU.supercontig_106.57 Carica papaya evm.TU.supercontig_106.57 N 0.873
evm.TU.supercontig_142.14 Carica papaya evm.TU.supercontig_142.14 N 0.873
F775_02582 Aegilops tauschii F775_02582 N 0.873
F775_02706 Aegilops tauschii F775_02706 N 0.841
fgenesh2_kg.3__3067__AT2G14760.1 Arabidopsis lyrata fgenesh2_kg.3__3067__AT2G14760.1 N 0.860
fgenesh2_kg.8__503__AT5G43175.1 Arabidopsis lyrata fgenesh2_kg.8__503__AT5G43175.1 N 0.914
gene02560-v1.0-hybrid Fragaria vesca gene02560-v1.0-hybrid N 0.873
GLYMA04G04801 Glycine max GLYMA04G04801 N 0.893
GLYMA10G40350 Glycine max GLYMA10G40350 N 0.873
GLYMA10G40360 Glycine max GLYMA10G40360 N 0.873
GLYMA14G09781 Glycine max GLYMA14G09781 N 0.873
GLYMA17G35423 Glycine max GLYMA17G35423 N 0.873
GLYMA20G26980 Glycine max GLYMA20G26980 N 0.873
GLYMA20G26991 Glycine max GLYMA20G26991 N 0.873
Gorai.005G231900 Gossypium raimondii Gorai.005G231900 N 0.873
Gorai.009G219100 Gossypium raimondii Gorai.009G219100 N 0.873
Gorai.010G025400 Gossypium raimondii Gorai.010G025400 N 0.873
GRMZM2G057260 Zea mays GRMZM2G057260 N 0.861
GRMZM2G383841 Zea mays GRMZM2G383841 N 0.861
GRMZM2G395549 Zea mays GRMZM2G395549 N 0.873
GSMUA_Achr2G17130_001 Musa acuminata GSMUA_Achr2G17130_001 N 0.869
GSMUA_Achr3G18870_001 Musa acuminata GSMUA_Achr3G18870_001 N 0.873
GSMUA_Achr4G23240_001 Musa acuminata GSMUA_Achr4G23240_001 N 0.873
GSMUA_Achr6G07760_001 Musa acuminata GSMUA_Achr6G07760_001 N 0.873
GSMUA_Achr6G16890_001 Musa acuminata GSMUA_Achr6G16890_001 N 0.846
GSMUA_Achr9G09600_001 Musa acuminata GSMUA_Achr9G09600_001 N 0.873
GSMUA_AchrUn_randomG07080_001 Musa acuminata GSMUA_AchrUn_randomG07080_001 N 0.849
LPERR03G21650 Leersia perrieri LPERR03G21650 N 0.861
LPERR07G17840 Leersia perrieri LPERR07G17840 N 0.873
LPERR11G16970 Leersia perrieri LPERR11G16970 N 0.870
LPERR12G14550 Leersia perrieri LPERR12G14550 N 0.873
Lus10001068.g Linum usitatissimum Lus10001068.g N 0.873
Lus10004315.g Linum usitatissimum Lus10004315.g N 0.873
MDP0000145825 Malus domestica MDP0000145825 N 0.873
MDP0000198037 Malus domestica MDP0000198037 N 0.873
MDP0000573178 Malus domestica MDP0000573178 N 0.873
mgf018282m Mimulus guttatus mgf018282m N 0.873
mgf022238m Mimulus guttatus mgf022238m N 0.873
mgf024863m Mimulus guttatus mgf024863m N 0.873
MLOC_60270 Hordeum vulgare MLOC_60270 N 0.873
MLOC_74022 Hordeum vulgare MLOC_74022 N 0.841
MLOC_76486 Hordeum vulgare MLOC_76486 N 0.873
MTR_1g018090 Medicago truncatula MTR_1g018090 N 0.873
MTR_1g106460 Medicago truncatula MTR_1g106460 N 0.873
MTR_1g106480 Medicago truncatula MTR_1g106480 N 0.873
MTR_3g103030 Medicago truncatula MTR_3g103030 N 0.847
MTR_5g005110 Medicago truncatula MTR_5g005110 N 0.873
OB03G17860 Oryza brachyantha OB03G17860 N 0.870
OB03G34210 Oryza brachyantha OB03G34210 N 0.861
OB07G26210 Oryza brachyantha OB07G26210 N 0.873
OB12G24200 Oryza brachyantha OB12G24200 N 0.873
OBART03G07520 Oryza barthii OBART03G07520 N 0.870
OBART03G26170 Oryza barthii OBART03G26170 N 0.861
OBART12G17400 Oryza barthii OBART12G17400 N 0.873
OGLUM03G07680 Oryza glumaepatula OGLUM03G07680 N 0.870
OGLUM03G27050 Oryza glumaepatula OGLUM03G27050 N 0.861
OGLUM07G20330 Oryza glumaepatula OGLUM07G20330 N 0.873
OGLUM09G03740 Oryza glumaepatula OGLUM09G03740 N 0.873
OLONG_006157 Oryza longistaminata OLONG_006157 N 0.873
OLONG_008046 Oryza longistaminata OLONG_008046 N 0.870
OLONG_010636 Oryza longistaminata OLONG_010636 N 0.861
OLONG_014997 Oryza longistaminata OLONG_014997 N 0.873
OMERI03G07360 Oryza meridionalis OMERI03G07360 N 0.870
OMERI03G23570 Oryza meridionalis OMERI03G23570 N 0.861
OMERI07G17220 Oryza meridionalis OMERI07G17220 N 0.873
OMERI12G12030 Oryza meridionalis OMERI12G12030 N 0.873
ONIVA03G07980 Oryza nivara ONIVA03G07980 N 0.870
ONIVA03G27180 Oryza nivara ONIVA03G27180 N 0.861
ONIVA07G18960 Oryza nivara ONIVA07G18960 N 0.873
ONIVA12G15960 Oryza nivara ONIVA12G15960 N 0.873
OPUNC03G07300 Oryza punctata OPUNC03G07300 N 0.870
OPUNC03G23870 Oryza punctata OPUNC03G23870 N 0.861
OPUNC07G19390 Oryza punctata OPUNC07G19390 N 0.873
OPUNC12G15720 Oryza punctata OPUNC12G15720 N 0.873
orange1.1g036928m.g Citrus sinensis orange1.1g036928m.g N 0.873
orange1.1g047654m.g Citrus sinensis orange1.1g047654m.g N 0.873
ORGLA03G0073500 Oryza glaberrima ORGLA03G0073500 N 0.870
ORGLA03G0242600 Oryza glaberrima ORGLA03G0242600 N 0.861
ORGLA12G0149000 Oryza glaberrima ORGLA12G0149000 N 0.873
ORUFI03G07580 Oryza rufipogon ORUFI03G07580 N 0.870
ORUFI03G27070 Oryza rufipogon ORUFI03G27070 N 0.861
ORUFI07G21430 Oryza rufipogon ORUFI07G21430 N 0.873
ORUFI12G19280 Oryza rufipogon ORUFI12G19280 N 0.873
OS03G0205300 Oryza sativa OS03G0205300 N 0.870
OS07G0588400 Oryza sativa OS07G0588400 N 0.873
OS12G0589000 Oryza sativa OS12G0589000 N 0.873
Pavir.Ba01059 Panicum virgatum Pavir.Ba01059 N 0.861
Pavir.Bb01173 Panicum virgatum Pavir.Bb01173 N 0.861
Pavir.Ia00352 Panicum virgatum Pavir.Ia00352 N 0.873
Pavir.Ia04640 Panicum virgatum Pavir.Ia04640 N 0.873
Pavir.Ib00696 Panicum virgatum Pavir.Ib00696 N 0.873
Pavir.J00626 Panicum virgatum Pavir.J00626 N 0.873
PGSC0003DMG400021526 Solanum tuberosum PGSC0003DMG400021526 N 0.873
PGSC0003DMG400036714 Solanum tuberosum PGSC0003DMG400036714 N 0.873
PGSC0003DMG400039299 Solanum tuberosum PGSC0003DMG400039299 N 0.870
PK01802.1 Cannabis sativa PK01802.1 N 0.873
Pm005392 Prunus mume Pm005392 N 0.873
POPTR_0001s30150 Populus trichocarpa POPTR_0001s30150 N 0.873
POPTR_0002s12000 Populus trichocarpa POPTR_0002s12000 N 0.873
POPTR_0009s09210 Populus trichocarpa POPTR_0009s09210 N 0.873
POPTR_0014s01730 Populus trichocarpa POPTR_0014s01730 N 0.873
PRUPE_ppa015160mg Prunus persica PRUPE_ppa015160mg N 0.873
RSL2 Arabidopsis lyrata fgenesh2_kg.7__724__AT4G33880.1 N 0.873
SapurV1A.0005s0400 Salix purpurea SapurV1A.0005s0400 N 0.873
SapurV1A.0019s0320 Salix purpurea SapurV1A.0019s0320 N 0.873
SapurV1A.0476s0200 Salix purpurea SapurV1A.0476s0200 N 0.873
SapurV1A.0845s0110 Salix purpurea SapurV1A.0845s0110 N 0.870
SapurV1A.2301s0020 Salix purpurea SapurV1A.2301s0020 N 0.870
Sb01g007160 Sorghum bicolor Sb01g007160 N 0.873
Sb02g037990 Sorghum bicolor Sb02g037990 N 0.861
Sb05g025230 Sorghum bicolor Sb05g025230 N 0.870
Si032445m.g Setaria italica Si032445m.g N 0.861
Si039720m.g Setaria italica Si039720m.g N 0.873
Solyc01g107140.1 Solanum lycopersicum Solyc01g107140.1 N 0.873
Solyc04g077960.1 Solanum lycopersicum Solyc04g077960.1 N 0.873
TCM_007220 Theobroma cacao TCM_007220 N 0.873
TCM_034717 Theobroma cacao TCM_034717 N 0.873
Thhalv10003393m.g Eutrema salsugineum Thhalv10003393m.g N 0.893
Thhalv10026786m.g Eutrema salsugineum Thhalv10026786m.g N 0.873
Traes_2AS_9A3F73BE3 Triticum aestivum Traes_2AS_9A3F73BE3 N 0.841
Traes_2BS_659F9ABB9 Triticum aestivum Traes_2BS_659F9ABB9 N 0.841
Traes_2DS_7C9C33E09 Triticum aestivum Traes_2DS_7C9C33E09 N 0.841
Traes_5AS_5B9D5E067 Triticum aestivum Traes_5AS_5B9D5E067 N 0.873
Traes_5BS_0F8DBB33D Triticum aestivum Traes_5BS_0F8DBB33D N 0.848
Traes_5DS_51467BEB4 Triticum aestivum Traes_5DS_51467BEB4 N 0.873
TRIUR3_17670 Triticum urartu TRIUR3_17670 N 0.841
TRIUR3_24341 Triticum urartu TRIUR3_24341 N 0.873
VIT_03s0091g00730 Vitis vinifera VIT_03s0091g00730 N 0.873
VIT_18s0001g09210 Vitis vinifera VIT_18s0001g09210 N 0.873