Ciclev10001291m.g (Citrus clementina)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Ciclev10001291m.g T049463_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10001291m bHLH 305 345

Links

Other bHLH family TFs
Other Citrus clementina TFs

231 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SapurV1A.0006s0290 Salix purpurea SapurV1A.0006s0290 N 0.914
MLOC_57076 Hordeum vulgare MLOC_57076 N 0.914
SapurV1A.0188s0290 Salix purpurea SapurV1A.0188s0290 N 0.914
MTR_3g112170 Medicago truncatula MTR_3g112170 N 0.914
30170.m014085 Ricinus communis 30170.m014085 N 0.914
cassava42530.valid.m1 Manihot esculenta cassava42530.valid.m1 N 0.914
Cucsa.342640 Cucumis sativus Cucsa.342640 N 0.914
evm.TU.supercontig_99.32 Carica papaya evm.TU.supercontig_99.32 N 0.914
fgenesh2_kg.1__2924__AT1G27660.1 Arabidopsis lyrata fgenesh2_kg.1__2924__AT1G27660.1 N 0.914
Aquca_010_00556 Aquilegia coerulea Aquca_010_00556 N 0.914
mgf013138m Mimulus guttatus mgf013138m N 0.914
GSMUA_Achr6G24280_001 Musa acuminata GSMUA_Achr6G24280_001 N 0.914
Pm005865 Prunus mume Pm005865 N 0.914
Cla021101 Citrullus lanatus Cla021101 N 0.914
POPTR_0002s03380 Populus trichocarpa POPTR_0002s03380 N 0.914
PGSC0003DMG400003746 Solanum tuberosum PGSC0003DMG400003746 N 0.914
POPTR_0005s25240 Populus trichocarpa POPTR_0005s25240 N 0.914
Sb03g008830 Sorghum bicolor Sb03g008830 N 0.914
PRUPE_ppa005486mg Prunus persica PRUPE_ppa005486mg N 0.914
Solyc02g084880.2 Solanum lycopersicum Solyc02g084880.2 N 0.914
Solyc04g080710.2 Solanum lycopersicum Solyc04g080710.2 N 0.914
VIT_18s0001g12970 Vitis vinifera VIT_18s0001g12970 N 0.914
Ca_04928 Cicer arietinum Ca_04928 N 0.914
OLONG_021979 Oryza longistaminata OLONG_021979 N 0.914
OPUNC01G00360 Oryza punctata OPUNC01G00360 N 0.914
TCM_034098 Theobroma cacao TCM_034098 N 0.914
gene11847-v1.0-hybrid Fragaria vesca gene11847-v1.0-hybrid N 0.914
Cucsa.359290 Cucumis sativus Cucsa.359290 N 0.914
orange1.1g035657m.g Citrus sinensis orange1.1g035657m.g N 0.914
Gorai.009G199600 Gossypium raimondii Gorai.009G199600 N 0.914
MDP0000687814 Malus domestica MDP0000687814 N 0.914
MDP0000168695 Malus domestica MDP0000168695 N 0.914
BHLH110 Arabidopsis thaliana AT1G27660 N 0.914
MDP0000262020 Malus domestica MDP0000262020 N 0.914
PDK_20s1709901g001 Phoenix dactylifera PDK_20s1709901g001 N 0.914
LjSGA_021413.2 Lotus japonicus LjSGA_021413.2 N 0.912
Thhalv10029319m.g Eutrema salsugineum Thhalv10029319m.g N 0.903
Al_scaffold_0006_3588 Arabidopsis lyrata Al_scaffold_0006_3588 N 0.903
AT4G05170 Arabidopsis thaliana AT4G05170 N 0.903
Cagra.1981s0012 Capsella grandiflora Cagra.1981s0012 N 0.903
Bostr.2983s0058 Boechera stricta Bostr.2983s0058 N 0.903
Carubv10003683m.g Capsella rubella Carubv10003683m.g N 0.903
Bra013520 Brassica rapa Bra013520 N 0.893
Bostr.10689s0083 Boechera stricta Bostr.10689s0083 N 0.893
BHLH103 Arabidopsis thaliana AT4G21340 N 0.893
Bra029562 Brassica rapa Bra029562 N 0.891
Bo9g076250 Brassica oleracea Bo9g076250 N 0.891
Eucgr.D00881 Eucalyptus grandis Eucgr.D00881 N 0.891
Traes_2AL_70AE1B8B8 Triticum aestivum Traes_2AL_70AE1B8B8 N 0.890
Sb03g036670 Sorghum bicolor Sb03g036670 N 0.890
TRIUR3_00968 Triticum urartu TRIUR3_00968 N 0.890
Traes_2BL_A014BCC51 Triticum aestivum Traes_2BL_A014BCC51 N 0.890
Pavir.Eb03429 Panicum virgatum Pavir.Eb03429 N 0.890
Traes_2BL_E82F7902D Triticum aestivum Traes_2BL_E82F7902D N 0.890
orange1.1g011373m.g Citrus sinensis orange1.1g011373m.g N 0.890
Traes_2DL_DCD7B13A8 Triticum aestivum Traes_2DL_DCD7B13A8 N 0.890
PRUPE_ppa005924mg Prunus persica PRUPE_ppa005924mg N 0.890
Pavir.Ea03112 Panicum virgatum Pavir.Ea03112 N 0.890
Si001796m.g Setaria italica Si001796m.g N 0.890
Si010139m.g Setaria italica Si010139m.g N 0.890
VIT_00s0274g00070 Vitis vinifera VIT_00s0274g00070 N 0.890
Si013853m.g Setaria italica Si013853m.g N 0.890
Si022548m.g Setaria italica Si022548m.g N 0.890
Solyc02g079760.2 Solanum lycopersicum Solyc02g079760.2 N 0.890
Pavir.Ga00384 Panicum virgatum Pavir.Ga00384 N 0.890
Solyc03g031450.2 Solanum lycopersicum Solyc03g031450.2 N 0.890
Sb09g024720 Sorghum bicolor Sb09g024720 N 0.890
TCM_030051 Theobroma cacao TCM_030051 N 0.890
Lus10025987.g Linum usitatissimum Lus10025987.g N 0.890
Gorai.009G175300 Gossypium raimondii Gorai.009G175300 N 0.890
Aquca_028_00271 Aquilegia coerulea Aquca_028_00271 N 0.890
mgf016565m Mimulus guttatus mgf016565m N 0.890
mgf008488m Mimulus guttatus mgf008488m N 0.890
SapurV1A.1304s0050 Salix purpurea SapurV1A.1304s0050 N 0.890
Pavir.J25904 Panicum virgatum Pavir.J25904 N 0.890
Pavir.J13928 Panicum virgatum Pavir.J13928 N 0.890
evm.TU.supercontig_27.162 Carica papaya evm.TU.supercontig_27.162 N 0.890
Gorai.006G085000 Gossypium raimondii Gorai.006G085000 N 0.890
Eucgr.E03614 Eucalyptus grandis Eucgr.E03614 N 0.890
Ciclev10015039m.g Citrus clementina Ciclev10015039m.g N 0.890
Pavir.J10443 Panicum virgatum Pavir.J10443 N 0.890
Gorai.010G147100 Gossypium raimondii Gorai.010G147100 N 0.890
SapurV1A.0028s0510 Salix purpurea SapurV1A.0028s0510 N 0.890
SapurV1A.0441s0120 Salix purpurea SapurV1A.0441s0120 N 0.890
Pm009855 Prunus mume Pm009855 N 0.890
gene30665-v1.0-hybrid Fragaria vesca gene30665-v1.0-hybrid N 0.890
Ca_00214 Cicer arietinum Ca_00214 N 0.890
MDP0000301999 Malus domestica MDP0000301999 N 0.890
29842.m003704 Ricinus communis 29842.m003704 N 0.890
Lus10018400.g Linum usitatissimum Lus10018400.g N 0.890
Gorai.011G020100 Gossypium raimondii Gorai.011G020100 N 0.890
Lus10007613.g Linum usitatissimum Lus10007613.g N 0.890
cassava19346.valid.m1 Manihot esculenta cassava19346.valid.m1 N 0.890
cassava13240.valid.m1 Manihot esculenta cassava13240.valid.m1 N 0.890
VIT_04s0023g02410 Vitis vinifera VIT_04s0023g02410 N 0.890
Sb07g004980 Sorghum bicolor Sb07g004980 N 0.890
LPERR01G28830 Leersia perrieri LPERR01G28830 N 0.890
MLOC_72940 Hordeum vulgare MLOC_72940 N 0.890
MTR_2g011070 Medicago truncatula MTR_2g011070 N 0.890
GSMUA_Achr9G24670_001 Musa acuminata GSMUA_Achr9G24670_001 N 0.890
GSMUA_Achr9G12100_001 Musa acuminata GSMUA_Achr9G12100_001 N 0.890
GSMUA_Achr4G33630_001 Musa acuminata GSMUA_Achr4G33630_001 N 0.890
GSMUA_Achr5G26430_001 Musa acuminata GSMUA_Achr5G26430_001 N 0.890
OB04G33270 Oryza brachyantha OB04G33270 N 0.890
OB05G29420 Oryza brachyantha OB05G29420 N 0.890
OGLUM01G37590 Oryza glumaepatula OGLUM01G37590 N 0.890
OGLUM04G26290 Oryza glumaepatula OGLUM04G26290 N 0.890
OBART05G21860 Oryza barthii OBART05G21860 N 0.890
OBART04G24870 Oryza barthii OBART04G24870 N 0.890
OB08G14900 Oryza brachyantha OB08G14900 N 0.890
OBART01G33360 Oryza barthii OBART01G33360 N 0.890
GSMUA_Achr11G18680_001 Musa acuminata GSMUA_Achr11G18680_001 N 0.890
GSMUA_Achr10G04860_001 Musa acuminata GSMUA_Achr10G04860_001 N 0.890
BGIOSGA020128 Oryza indica BGIOSGA020128 N 0.890
LjSGA_014369.1 Lotus japonicus LjSGA_014369.1 N 0.890
PK14284.1 Cannabis sativa PK14284.1 N 0.890
BGIOSGA020126 Oryza indica BGIOSGA020126 N 0.890
BGIOSGA017200 Oryza indica BGIOSGA017200 N 0.890
PDK_20s1457351g001 Phoenix dactylifera PDK_20s1457351g001 N 0.890
BGIOSGA000686 Oryza indica BGIOSGA000686 N 0.890
F775_12027 Aegilops tauschii F775_12027 N 0.890
F775_20405 Aegilops tauschii F775_20405 N 0.890
GRMZM2G313058 Zea mays GRMZM2G313058 N 0.890
GRMZM2G440529 Zea mays GRMZM2G440529 N 0.890
GRMZM2G155217 Zea mays GRMZM2G155217 N 0.890
GRMZM2G004732 Zea mays GRMZM2G004732 N 0.890
GLYMA13G32320 Glycine max GLYMA13G32320 N 0.890
GLYMA15G07010 Glycine max GLYMA15G07010 N 0.890
OGLUM05G23050 Oryza glumaepatula OGLUM05G23050 N 0.890
MLOC_37666 Hordeum vulgare MLOC_37666 N 0.890
ORGLA04G0213700 Oryza glaberrima ORGLA04G0213700 N 0.890
ORGLA05G0190400 Oryza glaberrima ORGLA05G0190400 N 0.890
OPUNC04G23980 Oryza punctata OPUNC04G23980 N 0.890
OPUNC01G32440 Oryza punctata OPUNC01G32440 N 0.890
ONIVA03G13290 Oryza nivara ONIVA03G13290 N 0.890
ONIVA05G22530 Oryza nivara ONIVA05G22530 N 0.890
ORUFI05G23130 Oryza rufipogon ORUFI05G23130 N 0.890
ORUFI06G19010 Oryza rufipogon ORUFI06G19010 N 0.890
POPTR_0004s02870 Populus trichocarpa POPTR_0004s02870 N 0.890
POPTR_0005s12150 Populus trichocarpa POPTR_0005s12150 N 0.890
PGSC0003DMG400013875 Solanum tuberosum PGSC0003DMG400013875 N 0.890
POPTR_0007s13360 Populus trichocarpa POPTR_0007s13360 N 0.890
OS04G0631600 Oryza sativa OS04G0631600 N 0.890
POPTR_0011s03560 Populus trichocarpa POPTR_0011s03560 N 0.890
ORUFI01G36520 Oryza rufipogon ORUFI01G36520 N 0.890
OMERI04G21930 Oryza meridionalis OMERI04G21930 N 0.890
OMERI01G30260 Oryza meridionalis OMERI01G30260 N 0.890
OLONG_026655 Oryza longistaminata OLONG_026655 N 0.890
OMERI12G12400 Oryza meridionalis OMERI12G12400 N 0.890
OLONG_006510 Oryza longistaminata OLONG_006510 N 0.890
ONIVA01G38120 Oryza nivara ONIVA01G38120 N 0.890
Eucgr.F03384 Eucalyptus grandis Eucgr.F03384 N 0.889
evm.TU.supercontig_12.1 Carica papaya evm.TU.supercontig_12.1 N 0.889
MDP0000295440 Malus domestica MDP0000295440 N 0.889
GLYMA12G17630 Glycine max GLYMA12G17630 N 0.889
GLYMA06G40760 Glycine max GLYMA06G40760 N 0.889
GLYMA12G34490 Glycine max GLYMA12G34490 N 0.889
GLYMA13G36010 Glycine max GLYMA13G36010 N 0.889
Ciclev10008228m.g Citrus clementina Ciclev10008228m.g N 0.889
Cla003883 Citrullus lanatus Cla003883 N 0.889
gene03259-v1.0-hybrid Fragaria vesca gene03259-v1.0-hybrid N 0.889
PGSC0003DMG400019236 Solanum tuberosum PGSC0003DMG400019236 N 0.889
Bra001798 Brassica rapa Bra001798 N 0.889
PK22680.1 Cannabis sativa PK22680.1 N 0.889
Bo3g076150 Brassica oleracea Bo3g076150 N 0.889
Ca_06936 Cicer arietinum Ca_06936 N 0.889
Gorai.009G429100 Gossypium raimondii Gorai.009G429100 N 0.889
Ca_19891 Cicer arietinum Ca_19891 N 0.889
PGSC0003DMG400025020 Solanum tuberosum PGSC0003DMG400025020 N 0.889
Gorai.002G079200 Gossypium raimondii Gorai.002G079200 N 0.889
Bo01052s010 Brassica oleracea Bo01052s010 N 0.889
Thhalv10020666m.g Eutrema salsugineum Thhalv10020666m.g N 0.889
Carubv10013632m.g Capsella rubella Carubv10013632m.g N 0.889
MDP0000296508 Malus domestica MDP0000296508 N 0.889
BHLH123 Arabidopsis thaliana AT3G20640 N 0.889
27733.m000033 Ricinus communis 27733.m000033 N 0.889
Solyc10g006640.2 Solanum lycopersicum Solyc10g006640.2 N 0.889
Solyc07g063830.2 Solanum lycopersicum Solyc07g063830.2 N 0.889
mgf001258m Mimulus guttatus mgf001258m N 0.889
TCM_031172 Theobroma cacao TCM_031172 N 0.889
SapurV1A.0694s0030 Salix purpurea SapurV1A.0694s0030 N 0.889
Cucsa.059580 Cucumis sativus Cucsa.059580 N 0.889
cassava36956.valid.m1 Manihot esculenta cassava36956.valid.m1 N 0.889
PGSC0003DMG400005064 Solanum tuberosum PGSC0003DMG400005064 N 0.889
Pm011692 Prunus mume Pm011692 N 0.889
VIT_19s0014g04670 Vitis vinifera VIT_19s0014g04670 N 0.889
POPTR_0011s13320 Populus trichocarpa POPTR_0011s13320 N 0.889
MTR_8g466800 Medicago truncatula MTR_8g466800 N 0.889
Lus10038550.g Linum usitatissimum Lus10038550.g N 0.889
Cagra.0316s0001 Capsella grandiflora Cagra.0316s0001 N 0.889
MTR_2g081820 Medicago truncatula MTR_2g081820 N 0.889
cassava28105.m1 Manihot esculenta cassava28105.m1 N 0.889
PRUPE_ppa023041mg Prunus persica PRUPE_ppa023041mg N 0.889
Bostr.19424s0583 Boechera stricta Bostr.19424s0583 N 0.889
Cucsa.125970 Cucumis sativus Cucsa.125970 N 0.887
chr5.CM0200.1030.nc Lotus japonicus chr5.CM0200.1030.nc N 0.883
Cagra.1062s0002 Capsella grandiflora Cagra.1062s0002 N 0.882
Bostr.26675s0184 Boechera stricta Bostr.26675s0184 N 0.882
VIT_05s0094g00480 Vitis vinifera VIT_05s0094g00480 N 0.882
Carubv10006994m.g Capsella rubella Carubv10006994m.g N 0.882
GLYMA16G24661 Glycine max GLYMA16G24661 N 0.878
Bra035761 Brassica rapa Bra035761 N 0.877
cassava21180.m1 Manihot esculenta cassava21180.m1 N 0.870
Bo1g024090 Brassica oleracea Bo1g024090 N 0.869
SapurV1A.0658s0070 Salix purpurea SapurV1A.0658s0070 N 0.865
SapurV1A.2213s0020 Salix purpurea SapurV1A.2213s0020 N 0.865
SapurV1A.0388s0180 Salix purpurea SapurV1A.0388s0180 N 0.859
TCM_019871 Theobroma cacao TCM_019871 N 0.859
28405.m000015 Ricinus communis 28405.m000015 N 0.859
PRUPE_ppa012528mg Prunus persica PRUPE_ppa012528mg N 0.859
POPTR_0019s12530 Populus trichocarpa POPTR_0019s12530 N 0.859
POPTR_0013s13050 Populus trichocarpa POPTR_0013s13050 N 0.859
cassava36740.valid.m1 Manihot esculenta cassava36740.valid.m1 N 0.859
Pm007388 Prunus mume Pm007388 N 0.859
cassava37772.valid.m1 Manihot esculenta cassava37772.valid.m1 N 0.859
cassava37773.valid.m1 Manihot esculenta cassava37773.valid.m1 N 0.859
BHLH154 Arabidopsis thaliana AT2G31730 N 0.858
Thhalv10017421m.g Eutrema salsugineum Thhalv10017421m.g N 0.857
Bra005644 Brassica rapa Bra005644 N 0.857
Bo4g049510 Brassica oleracea Bo4g049510 N 0.857
Bo9g041010 Brassica oleracea Bo9g041010 N 0.852
BHLH112 Arabidopsis thaliana AT1G61660 N 0.852
Bo1g098400 Brassica oleracea Bo1g098400 N 0.852
fgenesh2_kg.2__291__AT1G61660.1 Arabidopsis lyrata fgenesh2_kg.2__291__AT1G61660.1 N 0.852
Carubv10020420m.g Capsella rubella Carubv10020420m.g N 0.852
Bostr.10040s0018 Boechera stricta Bostr.10040s0018 N 0.852
Bra027080 Brassica rapa Bra027080 N 0.852
Bra031413 Brassica rapa Bra031413 N 0.852
Thhalv10023487m.g Eutrema salsugineum Thhalv10023487m.g N 0.852
Cagra.2507s0001 Capsella grandiflora Cagra.2507s0001 N 0.852
Bo3g026410 Brassica oleracea Bo3g026410 N 0.846