CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10001768m.g
(
Citrus clementina
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Ciclev10001768m.g
T049465_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10001768m
bHLH
182
229
DPHSIAERLRRERIADRMRALQELVPSCNKTDRAAMLDEIVDYVKFLR
Links
Other
bHLH
family TFs
Other
Citrus clementina
TFs
122 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PRUPE_ppa008172mg
Prunus persica
PRUPE_ppa008172mg
N
0.894
Pm003525
Prunus mume
Pm003525
N
0.894
Eucgr.H04337
Eucalyptus grandis
Eucgr.H04337
N
0.894
gene16564-v1.0-hybrid
Fragaria vesca
gene16564-v1.0-hybrid
N
0.894
MDP0000295593
Malus domestica
MDP0000295593
N
0.894
Aquca_017_00590
Aquilegia coerulea
Aquca_017_00590
N
0.894
Cucsa.289090
Cucumis sativus
Cucsa.289090
N
0.894
GLYMA20G36770
Glycine max
GLYMA20G36770
N
0.894
TCM_026346
Theobroma cacao
TCM_026346
N
0.894
VIT_05s0020g04620
Vitis vinifera
VIT_05s0020g04620
N
0.894
evm.TU.supercontig_117.94
Carica papaya
evm.TU.supercontig_117.94
N
0.894
MTR_1g080890
Medicago truncatula
MTR_1g080890
N
0.894
Cla011475
Citrullus lanatus
Cla011475
N
0.894
GLYMA10G30430
Glycine max
GLYMA10G30430
N
0.894
PK20184.1
Cannabis sativa
PK20184.1
N
0.894
Ca_03755
Cicer arietinum
Ca_03755
N
0.894
Gorai.007G277200
Gossypium raimondii
Gorai.007G277200
N
0.894
VIT_14s0030g02230
Vitis vinifera
VIT_14s0030g02230
N
0.894
MTR_1g070870
Medicago truncatula
MTR_1g070870
N
0.882
Ciclev10021443m.g
Citrus clementina
Ciclev10021443m.g
N
0.882
POPTR_0002s04620
Populus trichocarpa
POPTR_0002s04620
N
0.882
Ca_07790
Cicer arietinum
Ca_07790
N
0.882
Ca_12194
Cicer arietinum
Ca_12194
N
0.882
Cla015040
Citrullus lanatus
Cla015040
N
0.882
VIT_07s0141g00220
Vitis vinifera
VIT_07s0141g00220
N
0.882
TCM_004217
Theobroma cacao
TCM_004217
N
0.882
cassava36725.valid.m1
Manihot esculenta
cassava36725.valid.m1
N
0.882
29883.m001988
Ricinus communis
29883.m001988
N
0.882
Cucsa.388780
Cucumis sativus
Cucsa.388780
N
0.882
Eucgr.B01487
Eucalyptus grandis
Eucgr.B01487
N
0.882
orange1.1g022649m.g
Citrus sinensis
orange1.1g022649m.g
N
0.882
Gorai.001G242500
Gossypium raimondii
Gorai.001G242500
N
0.882
GLYMA10G03690
Glycine max
GLYMA10G03690
N
0.882
GLYMA02G16110
Glycine max
GLYMA02G16110
N
0.882
GLYMA03G31510
Glycine max
GLYMA03G31510
N
0.882
GLYMA19G34360
Glycine max
GLYMA19G34360
N
0.882
chr1.CM0375.380.nc
Lotus japonicus
chr1.CM0375.380.nc
N
0.882
PK25419.1
Cannabis sativa
PK25419.1
N
0.882
Gorai.007G141800
Gossypium raimondii
Gorai.007G141800
N
0.882
SapurV1A.0006s1290
Salix purpurea
SapurV1A.0006s1290
N
0.882
chr5.LjT29J15.30.nc
Lotus japonicus
chr5.LjT29J15.30.nc
N
0.881
MDP0000176749
Malus domestica
MDP0000176749
N
0.871
Pm020229
Prunus mume
Pm020229
N
0.871
Solyc09g083220.2
Solanum lycopersicum
Solyc09g083220.2
N
0.871
PGSC0003DMG400013393
Solanum tuberosum
PGSC0003DMG400013393
N
0.871
PRUPE_ppa009299mg
Prunus persica
PRUPE_ppa009299mg
N
0.871
PGSC0003DMG400006089
Solanum tuberosum
PGSC0003DMG400006089
N
0.871
gene08188-v1.0-hybrid
Fragaria vesca
gene08188-v1.0-hybrid
N
0.871
Solyc03g005350.2
Solanum lycopersicum
Solyc03g005350.2
N
0.868
29598.m000464
Ricinus communis
29598.m000464
N
0.864
cassava18573.valid.m1
Manihot esculenta
cassava18573.valid.m1
N
0.864
Lus10015909.g
Linum usitatissimum
Lus10015909.g
N
0.864
Lus10006587.g
Linum usitatissimum
Lus10006587.g
N
0.864
SapurV1A.0860s0050
Salix purpurea
SapurV1A.0860s0050
N
0.856
Solyc09g065820.2
Solanum lycopersicum
Solyc09g065820.2
N
0.856
POPTR_0005s23930
Populus trichocarpa
POPTR_0005s23930
N
0.856
Gorai.004G218900
Gossypium raimondii
Gorai.004G218900
N
0.856
PGSC0003DMG400019334
Solanum tuberosum
PGSC0003DMG400019334
N
0.856
Gorai.004G075200
Gossypium raimondii
Gorai.004G075200
N
0.856
mgf001465m
Mimulus guttatus
mgf001465m
N
0.856
OMERI06G24090
Oryza meridionalis
OMERI06G24090
I
0.853
OPUNC09G11520
Oryza punctata
OPUNC09G11520
I
0.853
BGIOSGA030928
Oryza indica
BGIOSGA030928
N
0.853
Thhalv10028824m.g
Eutrema salsugineum
Thhalv10028824m.g
N
0.852
Thhalv10008279m.g
Eutrema salsugineum
Thhalv10008279m.g
N
0.852
Carubv10009831m.g
Capsella rubella
Carubv10009831m.g
N
0.852
Cagra.0897s0074
Capsella grandiflora
Cagra.0897s0074
N
0.852
Cagra.0635s0023
Capsella grandiflora
Cagra.0635s0023
N
0.852
Bostr.2983s0202
Boechera stricta
Bostr.2983s0202
N
0.852
Pavir.Ba03672
Panicum virgatum
Pavir.Ba03672
I
0.852
Carubv10001523m.g
Capsella rubella
Carubv10001523m.g
N
0.852
Pavir.J03221
Panicum virgatum
Pavir.J03221
I
0.852
Pavir.J00283
Panicum virgatum
Pavir.J00283
I
0.852
Pavir.J04249
Panicum virgatum
Pavir.J04249
I
0.852
Si036929m.g
Setaria italica
Si036929m.g
I
0.852
BGIOSGA025266
Oryza indica
BGIOSGA025266
I
0.852
GRMZM2G162382
Zea mays
GRMZM2G162382
I
0.852
GRMZM2G004356
Zea mays
GRMZM2G004356
I
0.852
UNE12
Arabidopsis lyrata
fgenesh2_kg.6__3435__AT4G02590.2
N
0.852
BGIOSGA013729
Oryza indica
BGIOSGA013729
I
0.852
UNE12
Arabidopsis thaliana
AT4G02590
N
0.852
Bo01031s030
Brassica oleracea
Bo01031s030
N
0.852
LPERR03G31640
Leersia perrieri
LPERR03G31640
I
0.852
AT1G03040
Arabidopsis thaliana
AT1G03040
N
0.852
fgenesh2_kg.1__235__AT1G03040.1
Arabidopsis lyrata
fgenesh2_kg.1__235__AT1G03040.1
N
0.852
BRADI1G55427
Brachypodium distachyon
BRADI1G55427
I
0.852
Bo9g005930
Brassica oleracea
Bo9g005930
N
0.852
Bo5g003580
Brassica oleracea
Bo5g003580
N
0.852
Bo2g100750
Brassica oleracea
Bo2g100750
N
0.852
Bra000872
Brassica rapa
Bra000872
N
0.852
Bra018539
Brassica rapa
Bra018539
N
0.852
BRADI1G05430
Brachypodium distachyon
BRADI1G05430
I
0.852
Bra036256
Brassica rapa
Bra036256
N
0.852
Bra033368
Brassica rapa
Bra033368
N
0.852
OB07G13990
Oryza brachyantha
OB07G13990
I
0.852
LPERR07G04600
Leersia perrieri
LPERR07G04600
I
0.852
ONIVA07G04020
Oryza nivara
ONIVA07G04020
I
0.852
ONIVA03G38760
Oryza nivara
ONIVA03G38760
I
0.852
OS03G0797600
Oryza sativa
OS03G0797600
I
0.852
OPUNC03G34510
Oryza punctata
OPUNC03G34510
I
0.852
OPUNC07G05040
Oryza punctata
OPUNC07G05040
I
0.852
ORUFI07G05060
Oryza rufipogon
ORUFI07G05060
I
0.852
ORGLA07G0044500
Oryza glaberrima
ORGLA07G0044500
I
0.852
ORGLA06G0244900
Oryza glaberrima
ORGLA06G0244900
I
0.852
OMERI05G15760
Oryza meridionalis
OMERI05G15760
I
0.852
Sb02g004570
Sorghum bicolor
Sb02g004570
I
0.852
OGLUM03G37150
Oryza glumaepatula
OGLUM03G37150
I
0.852
OBART07G05280
Oryza barthii
OBART07G05280
I
0.852
OBART03G37400
Oryza barthii
OBART03G37400
I
0.852
OGLUM07G04790
Oryza glumaepatula
OGLUM07G04790
I
0.852
OLONG_014165
Oryza longistaminata
OLONG_014165
I
0.852
OMERI03G34570
Oryza meridionalis
OMERI03G34570
I
0.852
Si030704m.g
Setaria italica
Si030704m.g
I
0.852
cassava22704.valid.m1
Manihot esculenta
cassava22704.valid.m1
N
0.851
Lus10018761.g
Linum usitatissimum
Lus10018761.g
N
0.847
Lus10002720.g
Linum usitatissimum
Lus10002720.g
N
0.847
Lus10014726.g
Linum usitatissimum
Lus10014726.g
N
0.847
evm.TU.supercontig_52.97
Carica papaya
evm.TU.supercontig_52.97
N
0.847
LPERR01G07000
Leersia perrieri
LPERR01G07000
I
0.842
GSMUA_Achr9G25560_001
Musa acuminata
GSMUA_Achr9G25560_001
I
0.841
GSMUA_Achr5G03100_001
Musa acuminata
GSMUA_Achr5G03100_001
I
0.841
GSMUA_Achr4G21070_001
Musa acuminata
GSMUA_Achr4G21070_001
I
0.841