Ciclev10011214m.g (Citrus clementina)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Ciclev10011214m.g T049493_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK18474.1
M01127_2.00
Cannabis sativa
NRCACGTGCN

NGCACGTGYN
PBM
Lambert et al.(2019)
pTH10273
0.890 0.979
PK18474.1
M01768_2.00
Cannabis sativa
NCACGWK

MWCGTGN
PBM
Weirauch et al.(2014)
pTH9589
0.890 0.979
MYC2
M01699_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8083
0.890 0.958
MYC3
M01712_2.00
Arabidopsis thaliana
MWYGTGNNNN

NNNNCACRWK
PBM
Weirauch et al.(2014)
pTH8854
0.890 0.958
MYC4
M01707_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8260
0.890 0.938
OS01G0235700
M09894_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BHLH66_01
0.890 0.896
BHLH13
M01698_2.00
Arabidopsis thaliana
MCACGTGV

BCACGTGK
PBM
Weirauch et al.(2014)
pTH7565
0.879 0.917
PK09702.1
M01124_2.00
Cannabis sativa
GCACGTGV

BCACGTGC
PBM
Lambert et al.(2019)
pTH11374
0.864 0.667
AT2G22750
M06730_2.00
Arabidopsis thaliana
MRYGTKDNHCACGTGNN

NNCACGTGDNHMACRYK
Dap-seq
OMalley et al.(2016)
bHLH18_col_a
0.858 0.604
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10011214m bHLH 504 551

Links

Other bHLH family TFs
Other Citrus clementina TFs

570 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PMAA_080390 Penicillium marneffei PMAA_080390 N 0.000
SAPIO_CDS8323 Scedosporium apiospermum SAPIO_CDS8323 N 0.000
S40288_04526 Stachybotrys chartarum S40288_04526 N 0.000
S40288_03755 Stachybotrys chartarum S40288_03755 N 0.000
S40285_08657 Stachybotrys chlorohalonata S40285_08657 N 0.000
S40285_02230 Stachybotrys chlorohalonata S40285_02230 N 0.000
PVAR5_0122 Byssochlamys spectabilis PVAR5_0122 N 0.000
PV11_06549 Exophiala sideris PV11_06549 N 0.000
PV08_02174 Exophiala spinifera PV08_02174 N 0.000
PV07_02862 Cladophialophora immunda PV07_02862 N 0.000
PV06_10606 Exophiala oligosperma PV06_10606 N 0.000
PV05_00069 Exophiala xenobiotica PV05_00069 N 0.000
PODANS_2_6520 Podospora anserina PODANS_2_6520 N 0.000
PMAA_080390 Talaromyces marneffei PMAA_080390 N 0.000
PITC_081790 Penicillium italicum PITC_081790 N 0.000
PFICI_07869 Pestalotiopsis fici PFICI_07869 N 0.000
PEX1_030190 Penicillium expansum PEX1_030190 N 0.000
OIDMADRAFT_169765 Oidiodendron maius OIDMADRAFT_169765 N 0.000
SPBR_04675 Sporothrix brasiliensis SPBR_04675 N 0.000
THITE_2107846 Thielavia terrestris THITE_2107846 N 0.000
Pc16g10860 Penicillium chrysogenum Pc16g10860 N 0.000
estExt_Genewise1.C_12883 Cryphonectria parasitica estExt_Genewise1.C_12883 N 0.000
e_gw1.00771.84.1 Aspergillus carbonarius e_gw1.00771.84.1 N 0.000
fgenesh1_pg.sca_5_chr5_3_0000637 Nectria haematococca fgenesh1_pg.sca_5_chr5_3_0000637 N 0.000
fgenesh1_pg.sca_11_chr8_3_0000285 Nectria haematococca fgenesh1_pg.sca_11_chr8_3_0000285 N 0.000
estExt_Genewise1.C_sca_17_chr8_1_00336 Nectria haematococca estExt_Genewise1.C_sca_17_chr8_1_00336 N 0.000
e_gw1.20.1612.1 Nectria haematococca e_gw1.20.1612.1 N 0.000
Z519_11260 Cladophialophora bantiana Z519_11260 N 0.000
Z518_11281 Rhinocladiella mackenziei Z518_11281 N 0.000
Z517_00469 Fonsecaea pedrosoi Z517_00469 N 0.000
X797_009746 Metarhizium robertsii X797_009746 N 0.000
VDBG_06541 Verticillium alfalfae VDBG_06541 N 0.000
VDAG_05079 Verticillium dahliae VDAG_05079 N 0.000
UCRPA7_5783 Togninia minima UCRPA7_5783 N 0.000
U727_00431181161 Penicillium solitum U727_00431181161 N 0.000
TSTA_114940 Talaromyces stipitatus TSTA_114940 N 0.000
TRIATDRAFT_322087 Trichoderma atroviride TRIATDRAFT_322087 N 0.000
NechaG84217 Fusarium solani NechaG84217 N 0.000
NechaG80838 Fusarium solani NechaG80838 N 0.000
NechaG62595 Fusarium solani NechaG62595 N 0.000
FGRRES_09014 Fusarium graminearum FGRRES_09014 N 0.000
FGRRES_00217 Fusarium graminearum FGRRES_00217 N 0.000
FFUJ_10046 Fusarium fujikuroi FFUJ_10046 N 0.000
FFUJ_08949 Fusarium fujikuroi FFUJ_08949 N 0.000
FFUJ_00276 Fusarium fujikuroi FFUJ_00276 N 0.000
F503_02152 Ophiostoma piceae uamh F503_02152 N 0.000
CSUB01_05917 Colletotrichum sublineola CSUB01_05917 N 0.000
CMQ_1388 Grosmannia clavigera CMQ_1388 N 0.000
CGGC5_8904 Colletotrichum gloeosporioides CGGC5_8904 N 0.000
CFIO01_08628 Colletotrichum fioriniae CFIO01_08628 N 0.000
CFIO01_02089 Colletotrichum fioriniae CFIO01_02089 N 0.000
CADANGAG00005441 Aspergillus niger CADANGAG00005441 N 0.000
AFUA_5G01550 Aspergillus fumigatus CADAFUAG00002870 N 0.000
ACLA_007900 Aspergillus clavatus CADACLAG00000690 N 0.000
BBA_03307 Beauveria bassiana BBA_03307 N 0.000
A1O5_13134 Cladophialophora psammophila A1O5_13134 N 0.000
VDBG_06541 Verticillium albo atrum VDBG_06541 N 0.000
FOXG_01257 Fusarium oxysporum FOXG_01257 N 0.000
FOXG_09079 Fusarium oxysporum FOXG_09079 N 0.000
NechaG44183 Fusarium solani NechaG44183 N 0.000
MGU_07052 Metarhizium guizhouense MGU_07052 N 0.000
MBR_09867 Metarhizium brunneum MBR_09867 N 0.000
MAPG_09611 Magnaporthe poae MAPG_09611 N 0.000
MANI_005235 Metarhizium anisopliae MANI_005235 N 0.000
MAM_07146 Metarhizium album MAM_07146 N 0.000
MAJ_09423 Metarhizium majus MAJ_09423 N 0.000
MAC_07316 Metarhizium acridum MAC_07316 N 0.000
M438DRAFT_402343 Aureobasidium pullulans M438DRAFT_402343 N 0.000
HMPREF1624_05416 Sporothrix schenckii HMPREF1624_05416 N 0.000
HMPREF1120_00645 Exophiala dermatitidis HMPREF1120_00645 N 0.000
H072_10163 Dactylellina haptotyla H072_10163 N 0.000
GLRG_04837 Colletotrichum graminicola GLRG_04837 N 0.000
GGTG_12271 Gaeumannomyces graminis GGTG_12271 N 0.000
FVEG_06682 Fusarium verticillioides FVEG_06682 N 0.000
FPSE_06963 Fusarium pseudograminearum FPSE_06963 N 0.000
FOXG_13654 Fusarium oxysporum FOXG_13654 N 0.000
SNOG_10852 Stagonospora nodorum SNOG_10852 N 0.000