Ciclev10016289m.g (Citrus clementina)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Ciclev10016289m.g T049505_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK20225.1
M01128_2.00
Cannabis sativa
NCACGTGVN

NBCACGTGN
PBM
Lambert et al.(2019)
pTH11274
0.884 0.898
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10016289m bHLH 74 122

Links

Other bHLH family TFs
Other Citrus clementina TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
PK20225.1 Cannabis sativa PK20225.1 D 0.884
Cucsa.213230 Cucumis sativus Cucsa.213230 I 0.840
Cucsa.200860 Cucumis sativus Cucsa.200860 I 0.840
cassava32077.m1 Manihot esculenta cassava32077.m1 I 0.884
cassava18812.valid.m1 Manihot esculenta cassava18812.valid.m1 I 0.882
29900.m001610 Ricinus communis 29900.m001610 I 0.860
Cla019977 Citrullus lanatus Cla019977 I 0.840
Cla013743 Citrullus lanatus Cla013743 I 0.840
Ca_06386 Cicer arietinum Ca_06386 I 0.864
VIT_14s0068g01580 Vitis vinifera VIT_14s0068g01580 I 0.884
TRAES3BF011300020CFD_g Triticum aestivum TRAES3BF011300020CFD_g I 0.858
TCM_029711 Theobroma cacao TCM_029711 I 0.882
Si039730m.g Setaria italica Si039730m.g I 0.842
Si002655m.g Setaria italica Si002655m.g I 0.839
Si002517m.g Setaria italica Si002517m.g I 0.845
Sb03g001730 Sorghum bicolor Sb03g001730 I 0.858
Eucgr.E02743 Eucalyptus grandis Eucgr.E02743 I 0.852
Eucgr.D00509 Eucalyptus grandis Eucgr.D00509 I 0.842
evm.TU.supercontig_7.53 Carica papaya evm.TU.supercontig_7.53 I 0.884
SapurV1A.1821s0030 Salix purpurea SapurV1A.1821s0030 I 0.842
SapurV1A.1185s0010 Salix purpurea SapurV1A.1185s0010 I 0.842
Pavir.Ib01099 Panicum virgatum Pavir.Ib01099 I 0.842
Pavir.Eb00095 Panicum virgatum Pavir.Eb00095 I 0.858
Pavir.Ea00439 Panicum virgatum Pavir.Ea00439 I 0.839
Pavir.Ea00157 Panicum virgatum Pavir.Ea00157 I 0.858
Pavir.Ca01107 Panicum virgatum Pavir.Ca01107 I 0.839
orange1.1g024670m.g Citrus sinensis orange1.1g024670m.g I 0.914
MDP0000249969 Malus domestica MDP0000249969 I 0.863
Lus10013917.g Linum usitatissimum Lus10013917.g I 0.882
Lus10001885.g Linum usitatissimum Lus10001885.g I 0.884
Gorai.011G034000 Gossypium raimondii Gorai.011G034000 I 0.870
Gorai.009G163400 Gossypium raimondii Gorai.009G163400 I 0.882
gene29828-v1.0-hybrid Fragaria vesca gene29828-v1.0-hybrid I 0.858
Sb01g040450 Sorghum bicolor Sb01g040450 I 0.842
OS03G0260600 Oryza sativa OS03G0260600 I 0.842
MLOC_64390 Hordeum vulgare MLOC_64390 I 0.858
LPERR03G10060 Leersia perrieri LPERR03G10060 I 0.842
LPERR01G07000 Leersia perrieri LPERR01G07000 I 0.846
LPERR01G03590 Leersia perrieri LPERR01G03590 I 0.839
GSMUA_Achr1G21280_001 Musa acuminata GSMUA_Achr1G21280_001 I 0.842
GRMZM2G166642 Zea mays GRMZM2G166642 I 0.858
GRMZM2G088443 Zea mays GRMZM2G088443 I 0.839
GRMZM2G043854 Zea mays GRMZM2G043854 I 0.842
GRMZM2G016039 Zea mays GRMZM2G016039 I 0.858
GLYMA13G36741 Glycine max GLYMA13G36741 I 0.845
GLYMA12G33751 Glycine max GLYMA12G33751 I 0.845
GLYMA07G32690 Glycine max GLYMA07G32690 I 0.884
GLYMA02G15780 Glycine max GLYMA02G15780 I 0.864
BRADI2G03830 Brachypodium distachyon BRADI2G03830 I 0.839
BRADI1G67500 Brachypodium distachyon BRADI1G67500 I 0.842
MTR_2g015890 Medicago truncatula MTR_2g015890 I 0.840
MTR_4g087920 Medicago truncatula MTR_4g087920 I 0.864
OS01G0218100 Oryza sativa OS01G0218100 I 0.846
ORUFI03G11650 Oryza rufipogon ORUFI03G11650 I 0.842
ORUFI01G08040 Oryza rufipogon ORUFI01G08040 I 0.846
ORGLA03G0109100 Oryza glaberrima ORGLA03G0109100 I 0.842
ORGLA01G0065100 Oryza glaberrima ORGLA01G0065100 I 0.846
OPUNC01G07130 Oryza punctata OPUNC01G07130 I 0.846
ONIVA03G12280 Oryza nivara ONIVA03G12280 I 0.842
ONIVA01G09540 Oryza nivara ONIVA01G09540 I 0.846
OMERI01G07330 Oryza meridionalis OMERI01G07330 I 0.846
OLONG_004075 Oryza longistaminata OLONG_004075 I 0.842
OGLUM03G11280 Oryza glumaepatula OGLUM03G11280 I 0.842
OGLUM01G08450 Oryza glumaepatula OGLUM01G08450 I 0.846
OBART03G11320 Oryza barthii OBART03G11320 I 0.842
OB03G21490 Oryza brachyantha OB03G21490 I 0.842
OB01G17480 Oryza brachyantha OB01G17480 I 0.846
BGIOSGA003013 Oryza indica BGIOSGA003013 I 0.846