TF Information

Ciclev10032020m.g *(Citrus clementina)* bHLH
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00010 (HLH)	IPR001092	Ciclev10032020m.g	T049566_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
fgenesh1_pg.scaffold_37000071 M01757_2.00	Physcomitrella patens	NNCACGTGNN	NNCACGTGNN	PBM Weirauch et al.(2014) pTH8584	0.892	0.804
BIM2 M01701_2.00	Arabidopsis thaliana	NNCACGTGNN	NNCACGTGNN	PBM Weirauch et al.(2014) pTH8089	0.884	0.922
BIM2 M06727_2.00	Arabidopsis thaliana	CACGTGHBNNNNNNNNNNN	NNNNNNNNNNNVDCACGTG	Dap-seq OMalley et al.(2016) BIM2_colamp	0.884	0.922
BIM2 M06728_2.00	Arabidopsis thaliana	CACGTGMBNNNCVYV	BRBGNNNVKCACGTG	Dap-seq OMalley et al.(2016) BIM2_col_v3b	0.884	0.922
BIM1 M01710_2.00	Arabidopsis thaliana	NCRCGTGNNN	NNNCACGYGN	PBM Weirauch et al.(2014) pTH8114	0.864	0.804
BIM1 M06739_2.00	Arabidopsis thaliana	CACGTGAYNHNNNH	DNNNDNRTCACGTG	Dap-seq OMalley et al.(2016) BIM1_col_a	0.864	0.804
BIM1 M06740_2.00	Arabidopsis thaliana	NVKCACGTGMYHHNHNHNHNNN	NNNDNDNDNDDRKCACGTGMBN	Dap-seq OMalley et al.(2016) BIM1_colamp_a	0.864	0.804
BIM1 M09787_2.00	Arabidopsis thaliana	Transfac license required	Transfac license required	Transfac Matys et al.(2006) P$BIM1_01	0.864	0.804
For this family, TFs with SR scores > 0.838* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Ciclev10032020m	bHLH	53	103	IRSKHSVTEQRRRSKINERFQILREIIPHSDQKRDTASFLLEVIEYVQYLQ
Ciclev10032060m	bHLH	45	95	IRSKHSVTEQRRRSKINERFQILREIIPHSDQKRDTASFLLEVIEYVQYLQ
Ciclev10032062m	bHLH	45	95	IRSKHSVTEQRRRSKINERFQILREIIPHSDQKRDTASFLLEVIEYVQYLQ
Ciclev10032133m	bHLH	45	95	IRSKHSVTEQRRRSKINERFQILREIIPHSDQKRDTASFLLEVIEYVQYLQ
Ciclev10032241m	bHLH	45	95	IRSKHSVTEQRRRSKINERFQILREIIPHSDQKRDTASFLLEVIEYVQYLQ

Links
Other bHLH family TFs
Other *Citrus clementina* TFs

Invalid Input OrderBy

194 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action