CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Ciclev10033428m.g
(
Citrus clementina
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Ciclev10033428m.g
T049571_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SCRM
M09784_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ICE1_01
0.849
0.680
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Ciclev10033428m
bHLH
248
297
GRAKNLITERNRRNKLKDGLFALRALVPKISKMDRAAILGDAAEYIKELL
Links
Other
bHLH
family TFs
Other
Citrus clementina
TFs
127 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
orange1.1g041101m.g
Citrus sinensis
orange1.1g041101m.g
I
0.914
SCRM2
Arabidopsis lyrata
Al_scaffold_0001_1326
I
0.876
30147.m014419
Ricinus communis
30147.m014419
I
0.849
cassava17838.valid.m1
Manihot esculenta
cassava17838.valid.m1
I
0.849
Pm024587
Prunus mume
Pm024587
I
0.849
Pm016093
Prunus mume
Pm016093
I
0.849
cassava37254.valid.m1
Manihot esculenta
cassava37254.valid.m1
I
0.849
Cla003283
Citrullus lanatus
Cla003283
I
0.849
Cucsa.156040
Cucumis sativus
Cucsa.156040
I
0.849
mgf012194m
Mimulus guttatus
mgf012194m
I
0.849
mgf015974m
Mimulus guttatus
mgf015974m
I
0.849
gw1.257.54.1
Physcomitrella patens
gw1.257.54.1
I
0.849
estExt_Genewise1.C_510113
Physcomitrella patens
estExt_Genewise1.C_510113
I
0.849
Cla002682
Citrullus lanatus
Cla002682
I
0.849
estExt_fgenesh1_pg.C_300202
Physcomitrella patens
estExt_fgenesh1_pg.C_300202
I
0.849
Cucsa.134750
Cucumis sativus
Cucsa.134750
I
0.849
Ca_01394
Cicer arietinum
Ca_01394
I
0.849
TCM_017336
Theobroma cacao
TCM_017336
I
0.849
TRAES3BF001100060CFD_g
Triticum aestivum
TRAES3BF001100060CFD_g
I
0.849
TCM_014741
Theobroma cacao
TCM_014741
I
0.849
Solyc03g118310.2
Solanum lycopersicum
Solyc03g118310.2
I
0.849
Si001874m.g
Setaria italica
Si001874m.g
I
0.849
Si026212m.g
Setaria italica
Si026212m.g
I
0.849
Traes_7AL_ACAC47D88
Triticum aestivum
Traes_7AL_ACAC47D88
I
0.849
Traes_7BL_BF5300D88
Triticum aestivum
Traes_7BL_BF5300D88
I
0.849
VIT_17s0000g00330
Vitis vinifera
VIT_17s0000g00330
I
0.849
mgf016462m
Mimulus guttatus
mgf016462m
I
0.849
VIT_14s0068g01200
Vitis vinifera
VIT_14s0068g01200
I
0.849
VIT_01s0244g00130
Vitis vinifera
VIT_01s0244g00130
I
0.849
Traes_7DL_2A7EF919F
Triticum aestivum
Traes_7DL_2A7EF919F
I
0.849
TRIUR3_17003
Triticum urartu
TRIUR3_17003
I
0.849
Ca_23892
Cicer arietinum
Ca_23892
I
0.849
Bostr.0556s0344
Boechera stricta
Bostr.0556s0344
I
0.849
Pavir.Hb00982
Panicum virgatum
Pavir.Hb00982
I
0.849
SapurV1A.0517s0250
Salix purpurea
SapurV1A.0517s0250
I
0.849
Pavir.Ha01426
Panicum virgatum
Pavir.Ha01426
I
0.849
Pavir.Eb03736
Panicum virgatum
Pavir.Eb03736
I
0.849
orange1.1g047004m.g
Citrus sinensis
orange1.1g047004m.g
I
0.849
Pavir.Ea03858
Panicum virgatum
Pavir.Ea03858
I
0.849
SapurV1A.0672s0200
Salix purpurea
SapurV1A.0672s0200
I
0.849
SapurV1A.0774s0030
Salix purpurea
SapurV1A.0774s0030
I
0.849
chr1.CM1880.50.nc
Lotus japonicus
chr1.CM1880.50.nc
I
0.849
LjSGA_024382.1
Lotus japonicus
LjSGA_024382.1
I
0.849
PK06940.1
Cannabis sativa
PK06940.1
I
0.849
Thhalv10007566m.g
Eutrema salsugineum
Thhalv10007566m.g
I
0.849
Thhalv10004059m.g
Eutrema salsugineum
Thhalv10004059m.g
I
0.849
orange1.1g011370m.g
Citrus sinensis
orange1.1g011370m.g
I
0.849
MDP0000662999
Malus domestica
MDP0000662999
I
0.849
Eucgr.G01938
Eucalyptus grandis
Eucgr.G01938
I
0.849
evm.TU.supercontig_70.77
Carica papaya
evm.TU.supercontig_70.77
I
0.849
Ciclev10015052m.g
Citrus clementina
Ciclev10015052m.g
I
0.849
Carubv10017099m.g
Capsella rubella
Carubv10017099m.g
I
0.849
Bostr.13671s0164
Boechera stricta
Bostr.13671s0164
I
0.849
Cagra.23157s0001
Capsella grandiflora
Cagra.23157s0001
I
0.849
gene06435-v1.0-hybrid
Fragaria vesca
gene06435-v1.0-hybrid
I
0.849
Gorai.001G275600
Gossypium raimondii
Gorai.001G275600
I
0.849
MDP0000247912
Malus domestica
MDP0000247912
I
0.849
MDP0000304669
Malus domestica
MDP0000304669
I
0.849
MDP0000219146
Malus domestica
MDP0000219146
I
0.849
Gorai.007G072600
Gossypium raimondii
Gorai.007G072600
I
0.849
Gorai.007G044800
Gossypium raimondii
Gorai.007G044800
I
0.849
Aquca_100_00035
Aquilegia coerulea
Aquca_100_00035
I
0.849
SELMODRAFT_94010
Selaginella moellendorffii
SELMODRAFT_94010
I
0.849
GLYMA16G05390
Glycine max
GLYMA16G05390
I
0.849
GLYMA19G27483
Glycine max
GLYMA19G27483
I
0.849
GLYMA06G17330
Glycine max
GLYMA06G17330
I
0.849
GLYMA04G37750
Glycine max
GLYMA04G37750
I
0.849
F775_14780
Aegilops tauschii
F775_14780
I
0.849
ICE1
Arabidopsis lyrata
fgenesh2_kg.5__441__AT3G26744.2
I
0.849
GRMZM2G033356
Zea mays
GRMZM2G033356
I
0.849
GRMZM2G172297
Zea mays
GRMZM2G172297
I
0.849
GSMUA_Achr6G08070_001
Musa acuminata
GSMUA_Achr6G08070_001
I
0.849
LPERR01G37160
Leersia perrieri
LPERR01G37160
I
0.849
GSMUA_Achr11G09640_001
Musa acuminata
GSMUA_Achr11G09640_001
I
0.849
GSMUA_Achr10G18380_001
Musa acuminata
GSMUA_Achr10G18380_001
I
0.849
GRMZM2G173534
Zea mays
GRMZM2G173534
I
0.849
GSMUA_Achr10G12060_001
Musa acuminata
GSMUA_Achr10G12060_001
I
0.849
BRADI2G59497
Brachypodium distachyon
BRADI2G59497
I
0.849
Bra034246
Brassica rapa
Bra034246
I
0.849
BGIOSGA035358
Oryza indica
BGIOSGA035358
I
0.849
Bo00285s440
Brassica oleracea
Bo00285s440
I
0.849
BGIOSGA000206
Oryza indica
BGIOSGA000206
I
0.849
SCRM
Arabidopsis thaliana
AT3G26744
D
0.849
AMTR_s00016p00170610
Amborella trichopoda
AMTR_s00016p00170610
I
0.849
SCRM2
Arabidopsis thaliana
AT1G12860
I
0.849
Bo5g016510
Brassica oleracea
Bo5g016510
I
0.849
Bo7g083870
Brassica oleracea
Bo7g083870
I
0.849
Bra025226
Brassica rapa
Bra025226
I
0.849
Bra032947
Brassica rapa
Bra032947
I
0.849
Bra019794
Brassica rapa
Bra019794
I
0.849
Bra016749
Brassica rapa
Bra016749
I
0.849
Bo8g065080
Brassica oleracea
Bo8g065080
I
0.849
Bo9g008020
Brassica oleracea
Bo9g008020
I
0.849
SELMODRAFT_91237
Selaginella moellendorffii
SELMODRAFT_91237
I
0.849
LPERR11G11940
Leersia perrieri
LPERR11G11940
I
0.849
OS11G0523700
Oryza sativa
OS11G0523700
I
0.849
POPTR_0012s10780
Populus trichocarpa
POPTR_0012s10780
I
0.849
OS01G0928000
Oryza sativa
OS01G0928000
I
0.849
ORUFI11G16280
Oryza rufipogon
ORUFI11G16280
I
0.849
ORGLA11G0129200
Oryza glaberrima
ORGLA11G0129200
I
0.849
ORUFI01G46010
Oryza rufipogon
ORUFI01G46010
I
0.849
POPTR_0015s11650
Populus trichocarpa
POPTR_0015s11650
I
0.849
PRUPE_ppa005038mg
Prunus persica
PRUPE_ppa005038mg
I
0.849
SELMODRAFT_138758
Selaginella moellendorffii
SELMODRAFT_138758
I
0.849
SELMODRAFT_75047
Selaginella moellendorffii
SELMODRAFT_75047
I
0.849
SELMODRAFT_119431
Selaginella moellendorffii
SELMODRAFT_119431
I
0.849
Sb05g019530
Sorghum bicolor
Sb05g019530
I
0.849
PRUPE_ppa018220mg
Prunus persica
PRUPE_ppa018220mg
I
0.849
Sb03g044660
Sorghum bicolor
Sb03g044660
I
0.849
MLOC_46407
Hordeum vulgare
MLOC_46407
I
0.849
ORGLA01G0363500
Oryza glaberrima
ORGLA01G0363500
I
0.849
OBART01G42600
Oryza barthii
OBART01G42600
I
0.849
OBART11G15260
Oryza barthii
OBART11G15260
I
0.849
MTR_7g083900
Medicago truncatula
MTR_7g083900
I
0.849
MTR_3g498695
Medicago truncatula
MTR_3g498695
I
0.849
MLOC_76805
Hordeum vulgare
MLOC_76805
I
0.849
OGLUM01G46870
Oryza glumaepatula
OGLUM01G46870
I
0.849
OGLUM11G14700
Oryza glumaepatula
OGLUM11G14700
I
0.849
ONIVA12G10770
Oryza nivara
ONIVA12G10770
I
0.849
OPUNC01G41620
Oryza punctata
OPUNC01G41620
I
0.849
OPUNC11G12640
Oryza punctata
OPUNC11G12640
I
0.849
ONIVA01G48650
Oryza nivara
ONIVA01G48650
I
0.849
OMERI11G12580
Oryza meridionalis
OMERI11G12580
I
0.849
OMERI01G39590
Oryza meridionalis
OMERI01G39590
I
0.849
PRUPE_ppa002978mg
Prunus persica
PRUPE_ppa002978mg
I
0.845
evm.TU.supercontig_69.52
Carica papaya
evm.TU.supercontig_69.52
N
0.843
MDP0000790939
Malus domestica
MDP0000790939
N
0.841