gene12658-v1.0-hybrid (Fragaria vesca)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 gene12658-v1.0-hybrid T049847_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK15505.1
M01125_2.00 		Cannabis sativa
NRCACGTGYN
NRCACGTGYN		 PBM
Lambert et al.(2019)
pTH10268 		0.858 0.837
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna12658.1-v1.0-hybrid bHLH 419 467

Links

Other bHLH family TFs
Other Fragaria vesca TFs

40 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10026331m.g Capsella rubella Carubv10026331m.g I 0.893
Bostr.26833s0565 Boechera stricta Bostr.26833s0565 I 0.893
Al_scaffold_0008_2143 Arabidopsis lyrata Al_scaffold_0008_2143 I 0.893
Thhalv10013360m.g Eutrema salsugineum Thhalv10013360m.g I 0.893
Bra035639 Brassica rapa Bra035639 I 0.893
AT5G56960 Arabidopsis thaliana AT5G56960 I 0.893
Cagra.1569s0004 Capsella grandiflora Cagra.1569s0004 I 0.893
PRUPE_ppa020972mg Prunus persica PRUPE_ppa020972mg I 0.890
Cla017100 Citrullus lanatus Cla017100 I 0.890
Eucgr.C03476 Eucalyptus grandis Eucgr.C03476 I 0.890
Pm027191 Prunus mume Pm027191 I 0.890
Cucsa.117060 Cucumis sativus Cucsa.117060 I 0.890
MDP0000782908 Malus domestica MDP0000782908 I 0.890
Aquca_020_00438 Aquilegia coerulea Aquca_020_00438 I 0.882
Bo2g032920 Brassica oleracea Bo2g032920 I 0.882
LjT02N03.60.nd Lotus japonicus LjT02N03.60.nd I 0.876
GRMZM2G175480 Zea mays GRMZM2G175480 N 0.873
VIT_11s0016g02070 Vitis vinifera VIT_11s0016g02070 I 0.869
Ciclev10007937m.g Citrus clementina Ciclev10007937m.g I 0.869
orange1.1g008967m.g Citrus sinensis orange1.1g008967m.g I 0.869
GSMUA_Achr6G00900_001 Musa acuminata GSMUA_Achr6G00900_001 I 0.869
MDP0000119495 Malus domestica MDP0000119495 I 0.868
MDP0000252899 Malus domestica MDP0000252899 I 0.868
29912.m005337 Ricinus communis 29912.m005337 I 0.868
POPTR_0006s15310 Populus trichocarpa POPTR_0006s15310 I 0.868
cassava46879.m1 Manihot esculenta cassava46879.m1 I 0.868
cassava25701.m1 Manihot esculenta cassava25701.m1 I 0.865
TCM_037645 Theobroma cacao TCM_037645 I 0.863
PK15505.1 Cannabis sativa PK15505.1 D 0.858
OPUNC05G05910 Oryza punctata OPUNC05G05910 I 0.858
GLYMA15G18580 Glycine max GLYMA15G18580 I 0.854
GLYMA09G07391 Glycine max GLYMA09G07391 I 0.854
PGSC0003DMG400000335 Solanum tuberosum PGSC0003DMG400000335 I 0.854
Si024546m.g Setaria italica Si024546m.g I 0.849
Pavir.Ca00825 Panicum virgatum Pavir.Ca00825 I 0.849
Pavir.J01638 Panicum virgatum Pavir.J01638 I 0.849
Gorai.001G012400 Gossypium raimondii Gorai.001G012400 I 0.847
MTR_2g039620 Medicago truncatula MTR_2g039620 N 0.846
mgf018190m Mimulus guttatus mgf018190m I 0.845
GSMUA_Achr7G09080_001 Musa acuminata GSMUA_Achr7G09080_001 N 0.839