gene18888-v1.0-hybrid (Fragaria vesca)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 gene18888-v1.0-hybrid T049866_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
mrna18888.1-v1.0-hybrid bHLH 204 255

Links

Other bHLH family TFs
Other Fragaria vesca TFs

220 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10020360m.g Citrus clementina Ciclev10020360m.g N 0.890
evm.TU.supercontig_57.85 Carica papaya evm.TU.supercontig_57.85 N 0.890
gene18608-v1.0-hybrid Fragaria vesca gene18608-v1.0-hybrid N 0.890
GLYMA16G02020 Glycine max GLYMA16G02020 N 0.890
cassava29786.valid.m1 Manihot esculenta cassava29786.valid.m1 N 0.890
Ca_22410 Cicer arietinum Ca_22410 N 0.890
30076.m004456 Ricinus communis 30076.m004456 N 0.890
orange1.1g013752m.g Citrus sinensis orange1.1g013752m.g N 0.890
GLYMA07G05500 Glycine max GLYMA07G05500 N 0.890
chr3.CM0208.290.nc Lotus japonicus chr3.CM0208.290.nc N 0.890
BRADI3G38510 Brachypodium distachyon BRADI3G38510 N 0.887
LPERR02G27220 Leersia perrieri LPERR02G27220 N 0.887
cassava34492.m1 Manihot esculenta cassava34492.m1 N 0.887
Bra008017 Brassica rapa Bra008017 N 0.887
Gorai.007G113300 Gossypium raimondii Gorai.007G113300 N 0.887
LPERR09G09700 Leersia perrieri LPERR09G09700 N 0.887
Gorai.007G113200 Gossypium raimondii Gorai.007G113200 N 0.887
LPERR10G05620 Leersia perrieri LPERR10G05620 N 0.887
PGSC0003DMG400016145 Solanum tuberosum PGSC0003DMG400016145 N 0.887
Bo2g075510 Brassica oleracea Bo2g075510 N 0.887
Eucgr.H04738 Eucalyptus grandis Eucgr.H04738 N 0.887
BRADI3G58360 Brachypodium distachyon BRADI3G58360 N 0.887
TCM_005028 Theobroma cacao TCM_005028 N 0.887
Solyc11g010340.1 Solanum lycopersicum Solyc11g010340.1 N 0.887
BRADI1G71990 Brachypodium distachyon BRADI1G71990 N 0.887
Lus10012603.g Linum usitatissimum Lus10012603.g N 0.870
Pavir.Db01842 Panicum virgatum Pavir.Db01842 N 0.870
fgenesh1_pm.C_scaffold_6002861 Arabidopsis lyrata fgenesh1_pm.C_scaffold_6002861 N 0.870
Lus10010101.g Linum usitatissimum Lus10010101.g N 0.870
scaffold_403653.1 Arabidopsis lyrata scaffold_403653.1 N 0.868
Bostr.25993s0085 Boechera stricta Bostr.25993s0085 N 0.868
Pavir.Bb02386 Panicum virgatum Pavir.Bb02386 N 0.867
Sb04g027280 Sorghum bicolor Sb04g027280 N 0.867
Sb02g027210 Sorghum bicolor Sb02g027210 N 0.867
Sb01g044640 Sorghum bicolor Sb01g044640 N 0.867
Si017701m.g Setaria italica Si017701m.g N 0.867
AC233899.1_FG002 Zea mays AC233899.1_FG002 N 0.867
TCM_034439 Theobroma cacao TCM_034439 N 0.867
orange1.1g043618m.g Citrus sinensis orange1.1g043618m.g N 0.867
Pavir.Aa00538 Panicum virgatum Pavir.Aa00538 N 0.867
Si038653m.g Setaria italica Si038653m.g N 0.867
Sb0012s004780 Sorghum bicolor Sb0012s004780 N 0.867
POPTR_0002s10230 Populus trichocarpa POPTR_0002s10230 N 0.867
ORUFI02G34810 Oryza rufipogon ORUFI02G34810 N 0.867
ORGLA10G0067600 Oryza glaberrima ORGLA10G0067600 N 0.867
ORGLA09G0101900 Oryza glaberrima ORGLA09G0101900 N 0.867
ORGLA02G0287300 Oryza glaberrima ORGLA02G0287300 N 0.867
ORUFI09G14410 Oryza rufipogon ORUFI09G14410 N 0.867
ORUFI10G08570 Oryza rufipogon ORUFI10G08570 N 0.867
Pavir.Ia02758 Panicum virgatum Pavir.Ia02758 N 0.867
OS10G0376900 Oryza sativa OS10G0376900 N 0.867
OS09G0468700 Oryza sativa OS09G0468700 N 0.867
orange1.1g020210m.g Citrus sinensis orange1.1g020210m.g N 0.867
Pavir.Ia04907 Panicum virgatum Pavir.Ia04907 N 0.867
Ciclev10001811m.g Citrus clementina Ciclev10001811m.g N 0.867
Carubv10020657m.g Capsella rubella Carubv10020657m.g N 0.867
SapurV1A.0613s0120 Salix purpurea SapurV1A.0613s0120 N 0.867
Cagra.4006s0007 Capsella grandiflora Cagra.4006s0007 N 0.867
OPUNC10G07050 Oryza punctata OPUNC10G07050 N 0.867
Pavir.J40759 Panicum virgatum Pavir.J40759 N 0.867
evm.TU.supercontig_36.191 Carica papaya evm.TU.supercontig_36.191 N 0.867
Pavir.Ib02778 Panicum virgatum Pavir.Ib02778 N 0.867
Eucgr.B00048 Eucalyptus grandis Eucgr.B00048 N 0.867
Ciclev10026131m.g Citrus clementina Ciclev10026131m.g N 0.867
Pavir.Ia03109 Panicum virgatum Pavir.Ia03109 N 0.867
Bostr.10273s0131 Boechera stricta Bostr.10273s0131 N 0.867
Gorai.013G204300 Gossypium raimondii Gorai.013G204300 N 0.867
VIT_18s0001g06650 Vitis vinifera VIT_18s0001g06650 N 0.867
Lus10015902.g Linum usitatissimum Lus10015902.g N 0.867
Traes_5BL_DA72CE20D Triticum aestivum Traes_5BL_DA72CE20D N 0.867
chr1.LjT16B05.110.nd Lotus japonicus chr1.LjT16B05.110.nd N 0.867
Thhalv10018867m.g Eutrema salsugineum Thhalv10018867m.g N 0.867
cassava35271.valid.m1 Manihot esculenta cassava35271.valid.m1 N 0.867
Gorai.005G094800 Gossypium raimondii Gorai.005G094800 N 0.867
cassava31098.valid.m1 Manihot esculenta cassava31098.valid.m1 N 0.867
Pavir.J22933 Panicum virgatum Pavir.J22933 N 0.867
Si036568m.g Setaria italica Si036568m.g N 0.867
OB10G16200 Oryza brachyantha OB10G16200 N 0.867
OB09G19960 Oryza brachyantha OB09G19960 N 0.867
OBART02G33270 Oryza barthii OBART02G33270 N 0.867
GSMUA_Achr8G17650_001 Musa acuminata GSMUA_Achr8G17650_001 N 0.867
BGIOSGA005582 Oryza indica BGIOSGA005582 N 0.867
BGIOSGA030936 Oryza indica BGIOSGA030936 N 0.867
OB03G16590 Oryza brachyantha OB03G16590 N 0.867
BGIOSGA032814 Oryza indica BGIOSGA032814 N 0.867
Bra016080 Brassica rapa Bra016080 N 0.867
Bra003886 Brassica rapa Bra003886 N 0.867
MLOC_21759 Hordeum vulgare MLOC_21759 N 0.867
GRMZM2G082586 Zea mays GRMZM2G082586 N 0.867
OB02G40170 Oryza brachyantha OB02G40170 N 0.867
Bo6g092570 Brassica oleracea Bo6g092570 N 0.867
GLYMA02G37313 Glycine max GLYMA02G37313 N 0.867
GLYMA14G35560 Glycine max GLYMA14G35560 N 0.867
ONIVA02G35790 Oryza nivara ONIVA02G35790 N 0.867
OMERI09G10430 Oryza meridionalis OMERI09G10430 N 0.867
OMERI02G31750 Oryza meridionalis OMERI02G31750 N 0.867
ONIVA09G13890 Oryza nivara ONIVA09G13890 N 0.867
ONIVA10G07810 Oryza nivara ONIVA10G07810 N 0.867
OPUNC03G06240 Oryza punctata OPUNC03G06240 N 0.867
OPUNC02G30580 Oryza punctata OPUNC02G30580 N 0.867
OGLUM10G07850 Oryza glumaepatula OGLUM10G07850 N 0.867
BHLH96 Arabidopsis thaliana AT1G72210 N 0.867
OBART10G08120 Oryza barthii OBART10G08120 N 0.867
GRMZM2G045883 Zea mays GRMZM2G045883 N 0.867
OPUNC09G11790 Oryza punctata OPUNC09G11790 N 0.867
OGLUM02G33770 Oryza glumaepatula OGLUM02G33770 N 0.867
GRMZM2G008691 Zea mays GRMZM2G008691 N 0.864
Bo4g006950 Brassica oleracea Bo4g006950 N 0.864
MDP0000321049 Malus domestica MDP0000321049 N 0.860
Eucgr.H02788 Eucalyptus grandis Eucgr.H02788 N 0.860
VIT_15s0048g02510 Vitis vinifera VIT_15s0048g02510 N 0.860
Pm028748 Prunus mume Pm028748 N 0.860
cassava39415.m1 Manihot esculenta cassava39415.m1 N 0.860
MTR_8g024210 Medicago truncatula MTR_8g024210 N 0.860
MDP0000794913 Malus domestica MDP0000794913 N 0.860
MDP0000829998 Malus domestica MDP0000829998 N 0.860
PK21055.1 Cannabis sativa PK21055.1 N 0.860
PRUPE_ppa006041mg Prunus persica PRUPE_ppa006041mg N 0.860
SapurV1A.0058s0640 Salix purpurea SapurV1A.0058s0640 N 0.860
BRADI4G32650 Brachypodium distachyon BRADI4G32650 N 0.859
F775_03517 Aegilops tauschii F775_03517 N 0.857
PRUPE_ppa020862mg Prunus persica PRUPE_ppa020862mg N 0.857
Pm002111 Prunus mume Pm002111 N 0.857
Gorai.003G041800 Gossypium raimondii Gorai.003G041800 N 0.857
MLOC_60291 Hordeum vulgare MLOC_60291 N 0.857
TCM_001031 Theobroma cacao TCM_001031 N 0.857
PK27921.1 Cannabis sativa PK27921.1 N 0.857
Gorai.011G110900 Gossypium raimondii Gorai.011G110900 N 0.857
Solyc01g098720.2 Solanum lycopersicum Solyc01g098720.2 N 0.857
Gorai.004G243100 Gossypium raimondii Gorai.004G243100 N 0.857
LPERR05G23220 Leersia perrieri LPERR05G23220 N 0.857
BRADI2G22810 Brachypodium distachyon BRADI2G22810 N 0.857
BHLH67 Arabidopsis thaliana AT3G61950 N 0.856
Thhalv10006045m.g Eutrema salsugineum Thhalv10006045m.g N 0.856
Bostr.13158s0200 Boechera stricta Bostr.13158s0200 N 0.856
Cagra.0483s0048 Capsella grandiflora Cagra.0483s0048 N 0.856
fgenesh2_kg.5__2692__AT3G61950.1 Arabidopsis lyrata fgenesh2_kg.5__2692__AT3G61950.1 N 0.856
Carubv10018614m.g Capsella rubella Carubv10018614m.g N 0.856
Bra007644 Brassica rapa Bra007644 N 0.856
Bo8g097470 Brassica oleracea Bo8g097470 N 0.856
SapurV1A.0003s0430 Salix purpurea SapurV1A.0003s0430 N 0.855
POPTR_0002s18100 Populus trichocarpa POPTR_0002s18100 N 0.855
Ca_28086 Cicer arietinum Ca_28086 N 0.855
mgf017530m Mimulus guttatus mgf017530m N 0.849
MTR_5g064950 Medicago truncatula MTR_5g064950 N 0.843
Bo6g114730 Brassica oleracea Bo6g114730 N 0.843
BHLH57 Arabidopsis thaliana AT4G01460 N 0.842
Bostr.7365s0007 Boechera stricta Bostr.7365s0007 N 0.842
POPTR_0014s10190 Populus trichocarpa POPTR_0014s10190 N 0.842
Thhalv10028815m.g Eutrema salsugineum Thhalv10028815m.g N 0.842
Bo9g004020 Brassica oleracea Bo9g004020 N 0.842
Bra037414 Brassica rapa Bra037414 N 0.842
SapurV1A.0162s0340 Salix purpurea SapurV1A.0162s0340 N 0.842
PGSC0003DMG400017766 Solanum tuberosum PGSC0003DMG400017766 N 0.842
GRMZM2G015666 Zea mays GRMZM2G015666 N 0.842
SELMODRAFT_428659 Selaginella moellendorffii SELMODRAFT_428659 N 0.840
SELMODRAFT_430716 Selaginella moellendorffii SELMODRAFT_430716 N 0.840
MTR_8g066770 Medicago truncatula MTR_8g066770 N 0.840
Bo7g037540 Brassica oleracea Bo7g037540 N 0.840
Solyc05g053660.1 Solanum lycopersicum Solyc05g053660.1 N 0.840
Bra001929 Brassica rapa Bra001929 N 0.840
Solyc09g091760.1 Solanum lycopersicum Solyc09g091760.1 N 0.840
Lus10016680.g Linum usitatissimum Lus10016680.g N 0.840
Solyc08g076820.2 Solanum lycopersicum Solyc08g076820.2 N 0.840
Bo3g082010 Brassica oleracea Bo3g082010 N 0.840
MDP0000646823 Malus domestica MDP0000646823 N 0.840
orange1.1g014477m.g Citrus sinensis orange1.1g014477m.g N 0.840
PRUPE_ppa017746mg Prunus persica PRUPE_ppa017746mg N 0.840
PK04856.1 Cannabis sativa PK04856.1 N 0.840
FAMA Arabidopsis thaliana AT3G24140 N 0.840
PGSC0003DMG400017540 Solanum tuberosum PGSC0003DMG400017540 N 0.840
PK28391.1 Cannabis sativa PK28391.1 N 0.840
AMTR_s00089p00043950 Amborella trichopoda AMTR_s00089p00043950 N 0.840
PGSC0003DMG400015760 Solanum tuberosum PGSC0003DMG400015760 N 0.840
PGSC0003DMG400029634 Solanum tuberosum PGSC0003DMG400029634 N 0.840
Thhalv10002558m.g Eutrema salsugineum Thhalv10002558m.g N 0.840
PRUPE_ppa020429mg Prunus persica PRUPE_ppa020429mg N 0.840
FMA Arabidopsis lyrata scaffold_302925.1 N 0.840
MTR_0194s0050 Medicago truncatula MTR_0194s0050 N 0.840
POPTR_0017s08160 Populus trichocarpa POPTR_0017s08160 N 0.840
POPTR_0001s32160 Populus trichocarpa POPTR_0001s32160 N 0.840
SapurV1A.0462s0070 Salix purpurea SapurV1A.0462s0070 N 0.840
Bo1g101110 Brassica oleracea Bo1g101110 N 0.840
TCM_020336 Theobroma cacao TCM_020336 N 0.840
29904.m002956 Ricinus communis 29904.m002956 N 0.840
Carubv10013821m.g Capsella rubella Carubv10013821m.g N 0.840
30054.m000819 Ricinus communis 30054.m000819 N 0.840
Pm023207 Prunus mume Pm023207 N 0.840
GLYMA08G36590 Glycine max GLYMA08G36590 N 0.840
GLYMA06G35330 Glycine max GLYMA06G35330 N 0.840
Ciclev10005031m.g Citrus clementina Ciclev10005031m.g N 0.840
Cagra.0026s0026 Capsella grandiflora Cagra.0026s0026 N 0.840
GSMUA_Achr2G06030_001 Musa acuminata GSMUA_Achr2G06030_001 N 0.840
mgf015694m Mimulus guttatus mgf015694m N 0.840
Cucsa.256420 Cucumis sativus Cucsa.256420 N 0.840
GSMUA_Achr11G23340_001 Musa acuminata GSMUA_Achr11G23340_001 N 0.840
cassava27856.m1 Manihot esculenta cassava27856.m1 N 0.840
Aquca_034_00130 Aquilegia coerulea Aquca_034_00130 N 0.840
Bostr.19424s0222 Boechera stricta Bostr.19424s0222 N 0.840
cassava27750.m1 Manihot esculenta cassava27750.m1 N 0.840
Pm009474 Prunus mume Pm009474 N 0.840
GLYMA02G14290 Glycine max GLYMA02G14290 N 0.840
bHLH071 Vitis vinifera VIT_02s0012g01450 N 0.840
FMA Vitis vinifera VIT_05s0029g00050 N 0.840
VIT_07s0191g00240 Vitis vinifera VIT_07s0191g00240 N 0.840
Gorai.006G217200 Gossypium raimondii Gorai.006G217200 N 0.840
Bra028357 Brassica rapa Bra028357 N 0.840
Gorai.011G159100 Gossypium raimondii Gorai.011G159100 N 0.840
GSMUA_Achr11G00350_001 Musa acuminata GSMUA_Achr11G00350_001 N 0.840
Gorai.008G225800 Gossypium raimondii Gorai.008G225800 N 0.840
GSMUA_Achr8G28400_001 Musa acuminata GSMUA_Achr8G28400_001 N 0.840
gene02199-v1.0-hybrid Fragaria vesca gene02199-v1.0-hybrid N 0.840
GLYMA01G23230 Glycine max GLYMA01G23230 N 0.840
Cla021744 Citrullus lanatus Cla021744 N 0.840
Eucgr.E00273 Eucalyptus grandis Eucgr.E00273 N 0.840
Ca_16010 Cicer arietinum Ca_16010 N 0.840
Ca_12363 Cicer arietinum Ca_12363 N 0.840
TCM_015694 Theobroma cacao TCM_015694 N 0.840
evm.TU.supercontig_59.132 Carica papaya evm.TU.supercontig_59.132 N 0.840
GRMZM2G006631 Zea mays GRMZM2G006631 N 0.839