gene21000-v1.0-hybrid (Fragaria vesca)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 gene21000-v1.0-hybrid T049872_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK01630.1
M01118_2.00 		Cannabis sativa
GCACGTGD
HCACGTGC		 PBM
Lambert et al.(2019)
pTH11426 		0.884 0.920
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna21000.1-v1.0-hybrid bHLH 68 117

Links

Other bHLH family TFs
Other Fragaria vesca TFs

31 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10032356m.g Citrus clementina Ciclev10032356m.g I 0.884
Eucgr.J00190 Eucalyptus grandis Eucgr.J00190 I 0.884
Cucsa.136730 Cucumis sativus Cucsa.136730 I 0.884
cassava37862.valid.m1 Manihot esculenta cassava37862.valid.m1 I 0.884
Pm018950 Prunus mume Pm018950 I 0.884
evm.TU.supercontig_19.156 Carica papaya evm.TU.supercontig_19.156 I 0.884
Lus10007502.g Linum usitatissimum Lus10007502.g I 0.884
PK01630.1 Cannabis sativa PK01630.1 D 0.884
SapurV1A.0061s0470 Salix purpurea SapurV1A.0061s0470 I 0.884
orange1.1g023629m.g Citrus sinensis orange1.1g023629m.g I 0.884
Lus10028978.g Linum usitatissimum Lus10028978.g I 0.884
VIT_13s0067g01350 Vitis vinifera VIT_13s0067g01350 I 0.884
Cla006707 Citrullus lanatus Cla006707 I 0.884
POPTR_0008s07090 Populus trichocarpa POPTR_0008s07090 I 0.884
TCM_042475 Theobroma cacao TCM_042475 I 0.884
PRUPE_ppa010134mg Prunus persica PRUPE_ppa010134mg I 0.884
GLYMA18G02940 Glycine max GLYMA18G02940 I 0.884
GLYMA11G35480 Glycine max GLYMA11G35480 I 0.884
POPTR_0010s19400 Populus trichocarpa POPTR_0010s19400 I 0.882
chr2.CM0002.120.nc Lotus japonicus chr2.CM0002.120.nc I 0.873
GLYMA02G42570 Glycine max GLYMA02G42570 I 0.873
Gorai.012G078100 Gossypium raimondii Gorai.012G078100 I 0.873
PGSC0003DMG400027725 Solanum tuberosum PGSC0003DMG400027725 I 0.873
Solyc03g095980.2 Solanum lycopersicum Solyc03g095980.2 I 0.873
Ca_13402 Cicer arietinum Ca_13402 I 0.864
Gorai.011G292100 Gossypium raimondii Gorai.011G292100 I 0.864
29814.m000735 Ricinus communis 29814.m000735 I 0.864
MTR_3g070970 Medicago truncatula MTR_3g070970 I 0.864
PGSC0003DMG400015659 Solanum tuberosum PGSC0003DMG400015659 I 0.846
Bra000177 Brassica rapa Bra000177 I 0.845
fgenesh2_kg.108__1__AT2G40200.1 Arabidopsis lyrata fgenesh2_kg.108__1__AT2G40200.1 I 0.845