gene26139-v1.0-hybrid (Fragaria vesca)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 gene26139-v1.0-hybrid T049897_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
fgenesh1_pg.scaffold_37000071
M01757_2.00
Physcomitrella patens
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8584
0.868 0.882
BIM1
M01710_2.00
Arabidopsis thaliana
NCRCGTGNNN

NNNCACGYGN
PBM
Weirauch et al.(2014)
pTH8114
0.840 0.882
BIM1
M06739_2.00
Arabidopsis thaliana
CACGTGAYNHNNNH

DNNNDNRTCACGTG
Dap-seq
OMalley et al.(2016)
BIM1_col_a
0.840 0.882
BIM1
M06740_2.00
Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN

NNNDNDNDNDDRKCACGTGMBN
Dap-seq
OMalley et al.(2016)
BIM1_colamp_a
0.840 0.882
BIM1
M09787_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BIM1_01
0.840 0.882
BIM2
M01701_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8089
0.840 0.784
BIM2
M06727_2.00
Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN

NNNNNNNNNNNVDCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_colamp
0.840 0.784
BIM2
M06728_2.00
Arabidopsis thaliana
CACGTGMBNNNCVYV

BRBGNNNVKCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_col_v3b
0.840 0.784
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna26139.1-v1.0-hybrid bHLH 266 322

Links

Other bHLH family TFs
Other Fragaria vesca TFs

155 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GSMUA_Achr3G10640_001 Musa acuminata GSMUA_Achr3G10640_001 I 0.882
ORGLA02G0264700 Oryza glaberrima ORGLA02G0264700 I 0.880
Pavir.Aa00700 Panicum virgatum Pavir.Aa00700 I 0.880
Si016505m.g Setaria italica Si016505m.g I 0.880
OB02G38020 Oryza brachyantha OB02G38020 I 0.880
Pavir.Ab03017 Panicum virgatum Pavir.Ab03017 I 0.880
Sb04g029270 Sorghum bicolor Sb04g029270 I 0.880
BGIOSGA005697 Oryza indica BGIOSGA005697 I 0.880
OS02G0726700 Oryza sativa OS02G0726700 I 0.880
GRMZM2G317450 Zea mays GRMZM2G317450 I 0.880
POPTR_0008s11120 Populus trichocarpa POPTR_0008s11120 I 0.870
cassava43379.valid.m1 Manihot esculenta cassava43379.valid.m1 I 0.870
Solyc05g011810.2 Solanum lycopersicum Solyc05g011810.2 I 0.870
GSMUA_Achr9G19110_001 Musa acuminata GSMUA_Achr9G19110_001 I 0.870
cassava43370.valid.m1 Manihot esculenta cassava43370.valid.m1 I 0.870
TCM_014392 Theobroma cacao TCM_014392 I 0.870
MTR_4g110040 Medicago truncatula MTR_4g110040 I 0.870
Cucsa.328060 Cucumis sativus Cucsa.328060 I 0.870
30138.m003899 Ricinus communis 30138.m003899 I 0.870
POPTR_0015s03550 Populus trichocarpa POPTR_0015s03550 I 0.870
PGSC0003DMG400001919 Solanum tuberosum PGSC0003DMG400001919 I 0.870
PGSC0003DMG400019654 Solanum tuberosum PGSC0003DMG400019654 I 0.870
POPTR_0010s14740 Populus trichocarpa POPTR_0010s14740 I 0.870
PRUPE_ppa003436mg Prunus persica PRUPE_ppa003436mg I 0.870
BIM2 Vitis vinifera VIT_01s0010g00540 I 0.870
cassava29314.valid.m1 Manihot esculenta cassava29314.valid.m1 I 0.870
PRUPE_ppa008387mg Prunus persica PRUPE_ppa008387mg I 0.870
Cla022382 Citrullus lanatus Cla022382 I 0.870
BIM1 Vitis vinifera VIT_17s0000g04790 I 0.870
cassava29318.valid.m1 Manihot esculenta cassava29318.valid.m1 I 0.870
GSMUA_Achr4G19530_001 Musa acuminata GSMUA_Achr4G19530_001 I 0.870
Solyc04g005280.2 Solanum lycopersicum Solyc04g005280.2 I 0.870
Solyc06g069370.2 Solanum lycopersicum Solyc06g069370.2 I 0.870
SapurV1A.0084s0570 Salix purpurea SapurV1A.0084s0570 I 0.870
GSMUA_Achr2G05450_001 Musa acuminata GSMUA_Achr2G05450_001 I 0.870
evm.TU.supercontig_3.225 Carica papaya evm.TU.supercontig_3.225 I 0.870
MDP0000261293 Malus domestica MDP0000261293 I 0.870
orange1.1g038451m.g Citrus sinensis orange1.1g038451m.g I 0.870
gene04534-v1.0-hybrid Fragaria vesca gene04534-v1.0-hybrid I 0.870
orange1.1g019960m.g Citrus sinensis orange1.1g019960m.g I 0.870
Ciclev10032020m.g Citrus clementina Ciclev10032020m.g I 0.870
Ciclev10020248m.g Citrus clementina Ciclev10020248m.g I 0.870
SapurV1A.0178s0150 Salix purpurea SapurV1A.0178s0150 I 0.870
SapurV1A.0868s0010 Salix purpurea SapurV1A.0868s0010 I 0.870
GLYMA05G07490 Glycine max GLYMA05G07490 I 0.870
mgf013208m Mimulus guttatus mgf013208m I 0.870
GLYMA02G13670 Glycine max GLYMA02G13670 I 0.870
PK01364.1 Cannabis sativa PK01364.1 I 0.868
BGIOSGA028888 Oryza indica BGIOSGA028888 I 0.868
ORGLA08G0164200 Oryza glaberrima ORGLA08G0164200 I 0.868
OS08G0490000 Oryza sativa OS08G0490000 I 0.868
SapurV1A.0060s0510 Salix purpurea SapurV1A.0060s0510 I 0.868
ORUFI08G21030 Oryza rufipogon ORUFI08G21030 I 0.868
BRADI3G38970 Brachypodium distachyon BRADI3G38970 I 0.868
gw1.90.123.1 Physcomitrella patens gw1.90.123.1 I 0.868
SELMODRAFT_451475 Selaginella moellendorffii SELMODRAFT_451475 I 0.868
fgenesh1_pg.scaffold_37000071 Physcomitrella patens fgenesh1_pg.scaffold_37000071 D 0.868
estExt_fgenesh1_pg.C_2110039 Physcomitrella patens estExt_fgenesh1_pg.C_2110039 I 0.868
SELMODRAFT_451477 Selaginella moellendorffii SELMODRAFT_451477 I 0.868
OB08G25940 Oryza brachyantha OB08G25940 I 0.868
ONIVA08G20800 Oryza nivara ONIVA08G20800 I 0.868
OLONG_003583 Oryza longistaminata OLONG_003583 I 0.868
OGLUM08G19830 Oryza glumaepatula OGLUM08G19830 I 0.868
AMTR_s00006p00250310 Amborella trichopoda AMTR_s00006p00250310 I 0.868
OPUNC08G16820 Oryza punctata OPUNC08G16820 I 0.868
Cucsa.198520 Cucumis sativus Cucsa.198520 I 0.858
GLYMA17G08980 Glycine max GLYMA17G08980 I 0.858
GLYMA01G09010 Glycine max GLYMA01G09010 I 0.858
evm.TU.supercontig_289.6 Carica papaya evm.TU.supercontig_289.6 I 0.857
GSMUA_Achr9G28050_001 Musa acuminata GSMUA_Achr9G28050_001 I 0.857
BRADI3G56340 Brachypodium distachyon BRADI3G56340 I 0.850
MLOC_62335 Hordeum vulgare MLOC_62335 I 0.850
Traes_6BL_DA93728B3 Triticum aestivum Traes_6BL_DA93728B3 I 0.850
Traes_6DL_D38F3257B Triticum aestivum Traes_6DL_D38F3257B I 0.850
30138.m003913 Ricinus communis 30138.m003913 I 0.846
LPERR08G15680 Leersia perrieri LPERR08G15680 I 0.843
Pavir.J04606 Panicum virgatum Pavir.J04606 I 0.841
Traes_5BL_AAC9C7238 Triticum aestivum Traes_5BL_AAC9C7238 I 0.841
Traes_5AL_0D4BDDDCD Triticum aestivum Traes_5AL_0D4BDDDCD I 0.841
Traes_5DL_E96693018 Triticum aestivum Traes_5DL_E96693018 I 0.841
Si029604m.g Setaria italica Si029604m.g I 0.841
OLONG_020060 Oryza longistaminata OLONG_020060 I 0.841
BGIOSGA030958 Oryza indica BGIOSGA030958 I 0.841
OMERI09G10560 Oryza meridionalis OMERI09G10560 I 0.841
ONIVA09G14370 Oryza nivara ONIVA09G14370 I 0.841
OGLUM09G14430 Oryza glumaepatula OGLUM09G14430 I 0.841
LPERR09G10080 Leersia perrieri LPERR09G10080 I 0.841
BRADI4G32967 Brachypodium distachyon BRADI4G32967 I 0.841
F775_23096 Aegilops tauschii F775_23096 I 0.841
GRMZM2G009478 Zea mays GRMZM2G009478 I 0.841
GRMZM2G089501 Zea mays GRMZM2G089501 I 0.841
OPUNC09G12310 Oryza punctata OPUNC09G12310 I 0.841
OBART09G13850 Oryza barthii OBART09G13850 I 0.841
ORUFI09G14830 Oryza rufipogon ORUFI09G14830 I 0.841
OS09G0475400 Oryza sativa OS09G0475400 I 0.841
ORGLA09G0105800 Oryza glaberrima ORGLA09G0105800 I 0.841
Sb02g027460 Sorghum bicolor Sb02g027460 I 0.841
ORGLA06G0286200 Oryza glaberrima ORGLA06G0286200 I 0.841
Lus10004630.g Linum usitatissimum Lus10004630.g I 0.840
Gorai.013G098000 Gossypium raimondii Gorai.013G098000 I 0.840
Lus10026684.g Linum usitatissimum Lus10026684.g I 0.840
Gorai.009G327300 Gossypium raimondii Gorai.009G327300 I 0.840
Lus10034358.g Linum usitatissimum Lus10034358.g I 0.840
Bra009322 Brassica rapa Bra009322 I 0.840
Gorai.001G197500 Gossypium raimondii Gorai.001G197500 I 0.840
BIM2 Arabidopsis thaliana AT1G69010 D 0.840
PK10562.1 Cannabis sativa PK10562.1 I 0.840
Bra038332 Brassica rapa Bra038332 I 0.840
Bra029354 Brassica rapa Bra029354 I 0.840
Bra004355 Brassica rapa Bra004355 I 0.840
Gorai.007G040600 Gossypium raimondii Gorai.007G040600 I 0.840
Bo6g108530 Brassica oleracea Bo6g108530 I 0.840
Eucgr.I02069 Eucalyptus grandis Eucgr.I02069 I 0.840
Bo2g062560 Brassica oleracea Bo2g062560 I 0.840
Thhalv10018889m.g Eutrema salsugineum Thhalv10018889m.g I 0.840
BIM1 Arabidopsis thaliana AT5G08130 D 0.840
SapurV1A.0274s0040 Salix purpurea SapurV1A.0274s0040 I 0.840
Bo2g161110 Brassica oleracea Bo2g161110 I 0.840
Bo3g004690 Brassica oleracea Bo3g004690 I 0.840
PK00238.1 Cannabis sativa PK00238.1 I 0.840
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I 0.840
SapurV1A.2517s0020 Salix purpurea SapurV1A.2517s0020 I 0.840
Thhalv10027863m.g Eutrema salsugineum Thhalv10027863m.g I 0.840
Bo5g020460 Brassica oleracea Bo5g020460 I 0.840
Bo9g174770 Brassica oleracea Bo9g174770 I 0.840
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I 0.840
cassava14.valid.m1 Manihot esculenta cassava14.valid.m1 I 0.840
29790.m000843 Ricinus communis 29790.m000843 I 0.840
cassava15.valid.m1 Manihot esculenta cassava15.valid.m1 I 0.840
MTR_7g017320 Medicago truncatula MTR_7g017320 I 0.840
Cucsa.174600 Cucumis sativus Cucsa.174600 I 0.840
Cucsa.113490 Cucumis sativus Cucsa.113490 I 0.840
Ca_22043 Cicer arietinum Ca_22043 I 0.840
BIM3 Vitis vinifera VIT_14s0083g00930 I 0.840
BIM1 Arabidopsis lyrata scaffold_600819.1 I 0.840
TCM_011433 Theobroma cacao TCM_011433 I 0.840
TCM_019015 Theobroma cacao TCM_019015 I 0.840
PRUPE_ppa008856mg Prunus persica PRUPE_ppa008856mg I 0.840
POPTR_0004s11180 Populus trichocarpa POPTR_0004s11180 I 0.840
MTR_5g048350 Medicago truncatula MTR_5g048350 I 0.840
GLYMA18G51080 Glycine max GLYMA18G51080 I 0.840
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I 0.840
Cagra.1157s0023 Capsella grandiflora Cagra.1157s0023 I 0.840
Carubv10000655m.g Capsella rubella Carubv10000655m.g I 0.840
Carubv10020679m.g Capsella rubella Carubv10020679m.g I 0.840
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I 0.840
BIM2 Arabidopsis lyrata fgenesh2_kg.2__1159__AT1G69010.1 I 0.840
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I 0.840
Bostr.10273s0468 Boechera stricta Bostr.10273s0468 I 0.840
mgf005849m Mimulus guttatus mgf005849m I 0.840
mgf001137m Mimulus guttatus mgf001137m I 0.840
mgf011829m Mimulus guttatus mgf011829m I 0.840
GLYMA08G28010 Glycine max GLYMA08G28010 I 0.840
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I 0.840
Eucgr.B03113 Eucalyptus grandis Eucgr.B03113 I 0.840