Gorai.004G035800 (Gossypium raimondii)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Gorai.004G035800 T049956_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
OS08G0506700
M01755_2.00
Oryza sativa
NCCACTTGN

NCAAGTGGN
PBM
Weirauch et al.(2014)
pTH8547
0.879 0.863
BHLH80
M06722_2.00
Arabidopsis thaliana
DNCMACTTGCH

DGCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH80_col_a
0.858 0.784
BHLH80
M06723_2.00
Arabidopsis thaliana
DKCMACTTGCA

TGCAAGTKGMH
Dap-seq
OMalley et al.(2016)
bHLH80_colamp_a
0.858 0.784
BHLH122
M06724_2.00
Arabidopsis thaliana
NNDNCMACTTGNNH

DNNCAAGTKGNHNN
Dap-seq
OMalley et al.(2016)
bHLH122_col100_a
0.855 0.843
BHLH122
M06725_2.00
Arabidopsis thaliana
DNCMACTTGYN

NRCAAGTKGNH
Dap-seq
OMalley et al.(2016)
bHLH122_colamp_a
0.855 0.843
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.004G035800.1 bHLH 274 324
Gorai.004G035800.2 bHLH 274 324
Gorai.004G035800.3 bHLH 274 324
Gorai.004G035800.4 bHLH 197 247

Links

Other bHLH family TFs
Other Gossypium raimondii TFs

216 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
TCM_005925 Theobroma cacao TCM_005925 I 0.914
VIT_13s0064g01290 Vitis vinifera VIT_13s0064g01290 I 0.893
Solyc01g086870.2 Solanum lycopersicum Solyc01g086870.2 I 0.893
30152.m002405 Ricinus communis 30152.m002405 I 0.893
POPTR_0009s06910 Populus trichocarpa POPTR_0009s06910 I 0.893
cassava29651.valid.m1 Manihot esculenta cassava29651.valid.m1 I 0.893
PGSC0003DMG400025263 Solanum tuberosum PGSC0003DMG400025263 I 0.893
cassava30692.valid.m1 Manihot esculenta cassava30692.valid.m1 I 0.891
Pm025821 Prunus mume Pm025821 I 0.891
29216.m000261 Ricinus communis 29216.m000261 I 0.891
Pm000447 Prunus mume Pm000447 I 0.891
cassava2126.valid.m1 Manihot esculenta cassava2126.valid.m1 I 0.891
TCM_024842 Theobroma cacao TCM_024842 I 0.891
POPTR_0016s05100 Populus trichocarpa POPTR_0016s05100 I 0.891
POPTR_0006s05640 Populus trichocarpa POPTR_0006s05640 I 0.891
PRUPE_ppa006295mg Prunus persica PRUPE_ppa006295mg I 0.891
PRUPE_ppa019977mg Prunus persica PRUPE_ppa019977mg I 0.891
cassava35967.valid.m1 Manihot esculenta cassava35967.valid.m1 I 0.891
Solyc10g079050.1 Solanum lycopersicum Solyc10g079050.1 I 0.891
Cla017792 Citrullus lanatus Cla017792 I 0.891
Cucsa.242910 Cucumis sativus Cucsa.242910 I 0.891
MDP0000180376 Malus domestica MDP0000180376 I 0.891
Lus10031826.g Linum usitatissimum Lus10031826.g I 0.891
Lus10031255.g Linum usitatissimum Lus10031255.g I 0.891
Lus10021023.g Linum usitatissimum Lus10021023.g I 0.891
orange1.1g018007m.g Citrus sinensis orange1.1g018007m.g I 0.891
SapurV1A.0018s0320 Salix purpurea SapurV1A.0018s0320 I 0.891
PDK_20s1391471g001 Phoenix dactylifera PDK_20s1391471g001 I 0.891
PK18038.1 Cannabis sativa PK18038.1 I 0.891
SapurV1A.0133s0050 Salix purpurea SapurV1A.0133s0050 I 0.891
Gorai.006G140200 Gossypium raimondii Gorai.006G140200 I 0.891
Gorai.002G228900 Gossypium raimondii Gorai.002G228900 I 0.891
Aquca_009_00280 Aquilegia coerulea Aquca_009_00280 I 0.891
mgf016734m Mimulus guttatus mgf016734m I 0.891
PGSC0003DMG400008153 Solanum tuberosum PGSC0003DMG400008153 I 0.891
Ciclev10005233m.g Citrus clementina Ciclev10005233m.g I 0.891
Eucgr.A02417 Eucalyptus grandis Eucgr.A02417 I 0.891
gene20622-v1.0-hybrid Fragaria vesca gene20622-v1.0-hybrid I 0.891
gene00545-v1.0-hybrid Fragaria vesca gene00545-v1.0-hybrid I 0.891
evm.TU.supercontig_84.89 Carica papaya evm.TU.supercontig_84.89 I 0.891
cassava44054.valid.m1 Manihot esculenta cassava44054.valid.m1 I 0.891
VIT_08s0007g07810 Vitis vinifera VIT_08s0007g07810 I 0.891
GLYMA10G12150 Glycine max GLYMA10G12150 I 0.891
GSMUA_Achr5G22310_001 Musa acuminata GSMUA_Achr5G22310_001 I 0.891
evm.TU.contig_45766 Carica papaya evm.TU.contig_45766 I 0.884
SapurV1A.1898s0040 Salix purpurea SapurV1A.1898s0040 I 0.880
SapurV1A.0111s0030 Salix purpurea SapurV1A.0111s0030 I 0.880
ORUFI08G22260 Oryza rufipogon ORUFI08G22260 I 0.879
ORUFI09G15820 Oryza rufipogon ORUFI09G15820 I 0.879
ORGLA09G0112900 Oryza glaberrima ORGLA09G0112900 I 0.879
ORGLA08G0174800 Oryza glaberrima ORGLA08G0174800 I 0.879
Traes_7AS_4FAB72487 Triticum aestivum Traes_7AS_4FAB72487 I 0.879
GSMUA_Achr7G20490_001 Musa acuminata GSMUA_Achr7G20490_001 I 0.879
OS08G0506700 Oryza sativa OS08G0506700 D 0.879
OS09G0487900 Oryza sativa OS09G0487900 I 0.879
MLOC_67834 Hordeum vulgare MLOC_67834 I 0.879
Traes_7DS_B671A4EAD Triticum aestivum Traes_7DS_B671A4EAD I 0.879
F775_24151 Aegilops tauschii F775_24151 I 0.879
OPUNC09G13060 Oryza punctata OPUNC09G13060 I 0.879
BRADI3G39927 Brachypodium distachyon BRADI3G39927 I 0.879
TRIUR3_26625 Triticum urartu TRIUR3_26625 I 0.879
OPUNC08G18020 Oryza punctata OPUNC08G18020 I 0.879
OBART08G19860 Oryza barthii OBART08G19860 I 0.879
BGIOSGA028963 Oryza indica BGIOSGA028963 I 0.879
OLONG_017566 Oryza longistaminata OLONG_017566 I 0.879
OGLUM09G15300 Oryza glumaepatula OGLUM09G15300 I 0.879
OGLUM08G21000 Oryza glumaepatula OGLUM08G21000 I 0.879
OMERI08G16700 Oryza meridionalis OMERI08G16700 I 0.879
OMERI09G11370 Oryza meridionalis OMERI09G11370 I 0.879
ONIVA08G22410 Oryza nivara ONIVA08G22410 I 0.879
ONIVA08G17500 Oryza nivara ONIVA08G17500 I 0.879
OB08G26810 Oryza brachyantha OB08G26810 I 0.879
BGIOSGA031008 Oryza indica BGIOSGA031008 I 0.879
OBART09G14660 Oryza barthii OBART09G14660 I 0.879
gw1.185.89.1 Physcomitrella patens gw1.185.89.1 I 0.878
evm.TU.supercontig_85.115 Carica papaya evm.TU.supercontig_85.115 I 0.878
Eucgr.G03396 Eucalyptus grandis Eucgr.G03396 I 0.878
PDK_20s1630671g001 Phoenix dactylifera PDK_20s1630671g001 I 0.876
PDK_20s1484071g001 Phoenix dactylifera PDK_20s1484071g001 I 0.876
cassava36544.valid.m1 Manihot esculenta cassava36544.valid.m1 I 0.869
Ciclev10031622m.g Citrus clementina Ciclev10031622m.g I 0.866
e_gw1.34.393.1 Physcomitrella patens e_gw1.34.393.1 I 0.866
orange1.1g016638m.g Citrus sinensis orange1.1g016638m.g I 0.866
gene26967-v1.0-hybrid Fragaria vesca gene26967-v1.0-hybrid I 0.866
BGIOSGA008576 Oryza indica BGIOSGA008576 I 0.863
ORUFI02G24640 Oryza rufipogon ORUFI02G24640 I 0.863
OLONG_009256 Oryza longistaminata OLONG_009256 I 0.863
Pavir.Ab02229 Panicum virgatum Pavir.Ab02229 I 0.863
Pavir.Ga01365 Panicum virgatum Pavir.Ga01365 I 0.863
ORGLA02G0200100 Oryza glaberrima ORGLA02G0200100 I 0.863
SapurV1A.0027s0090 Salix purpurea SapurV1A.0027s0090 I 0.863
ONIVA02G26110 Oryza nivara ONIVA02G26110 I 0.863
OMERI02G22740 Oryza meridionalis OMERI02G22740 I 0.863
Pavir.J08536 Panicum virgatum Pavir.J08536 I 0.863
OBART02G23210 Oryza barthii OBART02G23210 I 0.863
OPUNC02G21170 Oryza punctata OPUNC02G21170 I 0.863
Pavir.Gb01377 Panicum virgatum Pavir.Gb01377 I 0.863
LPERR02G18900 Leersia perrieri LPERR02G18900 I 0.863
Sb04g025260 Sorghum bicolor Sb04g025260 I 0.863
Si010513m.g Setaria italica Si010513m.g I 0.863
OB02G30670 Oryza brachyantha OB02G30670 I 0.863
Sb06g020810 Sorghum bicolor Sb06g020810 I 0.863
GRMZM2G437481 Zea mays GRMZM2G437481 I 0.863
GLYMA02G29830 Glycine max GLYMA02G29830 I 0.860
Cagra.18223s0002 Capsella grandiflora Cagra.18223s0002 I 0.858
Cagra.9781s0002 Capsella grandiflora Cagra.9781s0002 I 0.858
Carubv10001721m.g Capsella rubella Carubv10001721m.g I 0.858
Cucsa.061590 Cucumis sativus Cucsa.061590 I 0.858
Bostr.25463s0393 Boechera stricta Bostr.25463s0393 I 0.858
SapurV1A.0391s0050 Salix purpurea SapurV1A.0391s0050 I 0.858
Bra036760 Brassica rapa Bra036760 I 0.858
Bra028088 Brassica rapa Bra028088 I 0.858
mgf002701m Mimulus guttatus mgf002701m I 0.858
Carubv10010050m.g Capsella rubella Carubv10010050m.g I 0.858
PK06301.1 Cannabis sativa PK06301.1 I 0.858
BHLH81 Arabidopsis thaliana AT4G09180 I 0.858
BHLH80 Arabidopsis thaliana AT1G35460 D 0.858
Gorai.013G138300 Gossypium raimondii Gorai.013G138300 I 0.858
MDP0000269890 Malus domestica MDP0000269890 I 0.858
PRUPE_ppa011017mg Prunus persica PRUPE_ppa011017mg I 0.858
orange1.1g023215m.g Citrus sinensis orange1.1g023215m.g I 0.858
Bo6g043840 Brassica oleracea Bo6g043840 I 0.858
scaffold_103992.1 Arabidopsis lyrata scaffold_103992.1 I 0.858
Solyc06g065040.2 Solanum lycopersicum Solyc06g065040.2 I 0.858
SapurV1A.0690s0120 Salix purpurea SapurV1A.0690s0120 I 0.858
Bo8g026850 Brassica oleracea Bo8g026850 I 0.858
gene26880-v1.0-hybrid Fragaria vesca gene26880-v1.0-hybrid I 0.858
Ciclev10002083m.g Citrus clementina Ciclev10002083m.g I 0.858
Bostr.1774s0027 Boechera stricta Bostr.1774s0027 I 0.858
SapurV1A.1647s0020 Salix purpurea SapurV1A.1647s0020 I 0.858
GLYMA08G26110 Glycine max GLYMA08G26110 I 0.858
fgenesh2_kg.6__2924__AT4G09180.1 Arabidopsis lyrata fgenesh2_kg.6__2924__AT4G09180.1 I 0.858
cassava13743.valid.m1 Manihot esculenta cassava13743.valid.m1 I 0.858
VIT_18s0041g00690 Vitis vinifera VIT_18s0041g00690 I 0.858
Thhalv10028883m.g Eutrema salsugineum Thhalv10028883m.g I 0.858
PGSC0003DMG400031314 Solanum tuberosum PGSC0003DMG400031314 I 0.858
TCM_036484 Theobroma cacao TCM_036484 I 0.858
Pm004181 Prunus mume Pm004181 I 0.858
Ca_14223 Cicer arietinum Ca_14223 I 0.855
Ca_02662 Cicer arietinum Ca_02662 I 0.855
GLYMA12G05930 Glycine max GLYMA12G05930 I 0.855
PK20089.1 Cannabis sativa PK20089.1 I 0.855
Eucgr.B03669 Eucalyptus grandis Eucgr.B03669 I 0.855
PDK_20s1302565g001 Phoenix dactylifera PDK_20s1302565g001 I 0.855
GLYMA11G13960 Glycine max GLYMA11G13960 I 0.855
Gorai.009G071900 Gossypium raimondii Gorai.009G071900 I 0.855
TCM_040564 Theobroma cacao TCM_040564 I 0.855
GLYMA15G03740 Glycine max GLYMA15G03740 I 0.855
MTR_2g098310 Medicago truncatula MTR_2g098310 I 0.855
orange1.1g015337m.g Citrus sinensis orange1.1g015337m.g I 0.855
GLYMA13G41670 Glycine max GLYMA13G41670 I 0.855
Bo4g191390 Brassica oleracea Bo4g191390 I 0.855
Ciclev10015437m.g Citrus clementina Ciclev10015437m.g I 0.855
Bo6g024810 Brassica oleracea Bo6g024810 I 0.855
Bra016886 Brassica rapa Bra016886 I 0.855
Bra018896 Brassica rapa Bra018896 I 0.855
GSMUA_Achr9G27780_001 Musa acuminata GSMUA_Achr9G27780_001 I 0.855
Bostr.26675s0074 Boechera stricta Bostr.26675s0074 I 0.855
Cagra.2093s0006 Capsella grandiflora Cagra.2093s0006 I 0.855
fgenesh2_kg.1__4183__AT1G51140.1 Arabidopsis lyrata fgenesh2_kg.1__4183__AT1G51140.1 I 0.855
Solyc12g100140.1 Solanum lycopersicum Solyc12g100140.1 I 0.855
BHLH122 Arabidopsis thaliana AT1G51140 D 0.855
PGSC0003DMG400023852 Solanum tuberosum PGSC0003DMG400023852 I 0.855
Thhalv10011463m.g Eutrema salsugineum Thhalv10011463m.g I 0.855
Carubv10009458m.g Capsella rubella Carubv10009458m.g I 0.855
PRUPE_ppa006134mg Prunus persica PRUPE_ppa006134mg I 0.853
Pm016406 Prunus mume Pm016406 I 0.853
Pavir.Aa01423 Panicum virgatum Pavir.Aa01423 I 0.852
GSMUA_Achr6G21220_001 Musa acuminata GSMUA_Achr6G21220_001 I 0.852
Ca_26916 Cicer arietinum Ca_26916 I 0.851
Cla015469 Citrullus lanatus Cla015469 I 0.850
AMTR_s00070p00149100 Amborella trichopoda AMTR_s00070p00149100 I 0.847
mgf018372m Mimulus guttatus mgf018372m N 0.847
cassava35513.valid.m1 Manihot esculenta cassava35513.valid.m1 I 0.846
Solyc11g056650.1 Solanum lycopersicum Solyc11g056650.1 I 0.846
30149.m000231 Ricinus communis 30149.m000231 I 0.846
PGSC0003DMG400022058 Solanum tuberosum PGSC0003DMG400022058 I 0.846
AT2G43140 Arabidopsis thaliana AT2G43140 I 0.843
chr5.LjT42F22.20.nc Lotus japonicus chr5.LjT42F22.20.nc I 0.843
SapurV1A.0071s0010 Salix purpurea SapurV1A.0071s0010 I 0.843
PK07850.1 Cannabis sativa PK07850.1 I 0.843
SapurV1A.0529s0060 Salix purpurea SapurV1A.0529s0060 I 0.843
SapurV1A.0402s0180 Salix purpurea SapurV1A.0402s0180 I 0.843
Pavir.J00377 Panicum virgatum Pavir.J00377 I 0.843
Pavir.J14004 Panicum virgatum Pavir.J14004 I 0.843
Thhalv10016998m.g Eutrema salsugineum Thhalv10016998m.g I 0.843
Cagra.3706s0004 Capsella grandiflora Cagra.3706s0004 I 0.843
VIT_05s0124g00240 Vitis vinifera VIT_05s0124g00240 I 0.843
TCM_020066 Theobroma cacao TCM_020066 I 0.843
Pm007619 Prunus mume Pm007619 I 0.843
GSMUA_Achr3G11110_001 Musa acuminata GSMUA_Achr3G11110_001 I 0.843
fgenesh2_kg.4__2475__AT2G43140.1 Arabidopsis lyrata fgenesh2_kg.4__2475__AT2G43140.1 I 0.843
GLYMA20G39220 Glycine max GLYMA20G39220 I 0.843
GRMZM2G085467 Zea mays GRMZM2G085467 I 0.843
Sb02g028300 Sorghum bicolor Sb02g028300 I 0.843
Si029614m.g Setaria italica Si029614m.g I 0.843
GRMZM2G417597 Zea mays GRMZM2G417597 I 0.843
Solyc09g098110.2 Solanum lycopersicum Solyc09g098110.2 I 0.843
Pavir.Ba01718 Panicum virgatum Pavir.Ba01718 I 0.843
PGSC0003DMG400006569 Solanum tuberosum PGSC0003DMG400006569 I 0.843
Gorai.011G144600 Gossypium raimondii Gorai.011G144600 I 0.843
Bra000291 Brassica rapa Bra000291 I 0.843
Bo4g019620 Brassica oleracea Bo4g019620 I 0.843
Bo3g036400 Brassica oleracea Bo3g036400 I 0.843
MDP0000273574 Malus domestica MDP0000273574 I 0.843
Bra004748 Brassica rapa Bra004748 I 0.843
Eucgr.J00796 Eucalyptus grandis Eucgr.J00796 I 0.843
Aquca_058_00134 Aquilegia coerulea Aquca_058_00134 I 0.843
mgf005043m Mimulus guttatus mgf005043m I 0.843
Bostr.25993s0461 Boechera stricta Bostr.25993s0461 I 0.843
Carubv10023683m.g Capsella rubella Carubv10023683m.g I 0.843
PRUPE_ppa025178mg Prunus persica PRUPE_ppa025178mg I 0.843
POPTR_0001s27680 Populus trichocarpa POPTR_0001s27680 I 0.839
Cucsa.050160 Cucumis sativus Cucsa.050160 I 0.838
GLYMA08G16190 Glycine max GLYMA08G16190 I 0.838