CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.007G034400
(
Gossypium raimondii
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Gorai.007G034400
T049999_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BPE
M01700_2.00
Arabidopsis thaliana
NCACGTNNN
NNNACGTGN
PBM
Weirauch et al.(2014)
pTH7290
0.879
0.980
BPE
M06726_2.00
Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB
VWNNNNNCACGTGNNNNNNNN
Dap-seq
OMalley et al.(2016)
bHLH31_col
0.879
0.980
BHLH78
M01713_2.00
Arabidopsis thaliana
GCACGTGC
GCACGTGC
PBM
Weirauch et al.(2014)
pTH7666
0.866
0.863
BHLH49
M01052_2.00
Arabidopsis thaliana
NNCACGTGCN
NGCACGTGNN
PBM
Sullivan et al.(2014)
pTH7309
0.840
0.843
PK06517.1
M01122_2.00
Cannabis sativa
NCACGTGC
GCACGTGN
PBM
Lambert et al.(2019)
pTH10104
0.840
0.843
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.007G034400.1
bHLH
163
213
ATDSHSLAERARRERISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQ
Gorai.007G034400.2
bHLH
163
213
ATDSHSLAERARRERISERMKILQDLVPGCNKVIGKALVLDEIINYIQSLQ
Gorai.007G034400.3
bHLH
163
195
ATDSHSLAERARRERISERMKILQDLVPGCNKV
Links
Other
bHLH
family TFs
Other
Gossypium raimondii
TFs
564 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy