CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.011G034000
(
Gossypium raimondii
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Gorai.011G034000
T050093_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK20225.1
M01128_2.00
Cannabis sativa
NCACGTGVN
NBCACGTGN
PBM
Lambert et al.(2019)
pTH11274
0.870
0.816
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.011G034000.1
bHLH
69
117
LKSHSEAERRRRERINAHLDTLRTLLPYREKMDKATLLGEVVRQVKELK
Links
Other
bHLH
family TFs
Other
Gossypium raimondii
TFs
69 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gorai.009G163400
Gossypium raimondii
Gorai.009G163400
I
0.873
TCM_029711
Theobroma cacao
TCM_029711
I
0.873
cassava18812.valid.m1
Manihot esculenta
cassava18812.valid.m1
I
0.870
Lus10013917.g
Linum usitatissimum
Lus10013917.g
I
0.870
Lus10001885.g
Linum usitatissimum
Lus10001885.g
I
0.870
cassava32077.m1
Manihot esculenta
cassava32077.m1
I
0.870
evm.TU.supercontig_7.53
Carica papaya
evm.TU.supercontig_7.53
I
0.870
orange1.1g024670m.g
Citrus sinensis
orange1.1g024670m.g
I
0.870
GLYMA07G32690
Glycine max
GLYMA07G32690
I
0.870
PK20225.1
Cannabis sativa
PK20225.1
D
0.870
Ciclev10016289m.g
Citrus clementina
Ciclev10016289m.g
I
0.870
VIT_14s0068g01580
Vitis vinifera
VIT_14s0068g01580
I
0.870
Eucgr.E02743
Eucalyptus grandis
Eucgr.E02743
I
0.861
ONIVA01G09540
Oryza nivara
ONIVA01G09540
I
0.855
OMERI01G07330
Oryza meridionalis
OMERI01G07330
I
0.855
ORGLA01G0065100
Oryza glaberrima
ORGLA01G0065100
I
0.855
OGLUM01G08450
Oryza glumaepatula
OGLUM01G08450
I
0.855
ORUFI01G08040
Oryza rufipogon
ORUFI01G08040
I
0.855
OS01G0218100
Oryza sativa
OS01G0218100
I
0.855
BGIOSGA003013
Oryza indica
BGIOSGA003013
I
0.855
OB01G17480
Oryza brachyantha
OB01G17480
I
0.855
LPERR01G07000
Leersia perrieri
LPERR01G07000
I
0.855
OPUNC01G07130
Oryza punctata
OPUNC01G07130
I
0.855
OPUNC05G04080
Oryza punctata
OPUNC05G04080
N
0.850
Ca_06386
Cicer arietinum
Ca_06386
I
0.850
OS05G0163900
Oryza sativa
OS05G0163900
N
0.850
ORGLA05G0041400
Oryza glaberrima
ORGLA05G0041400
N
0.850
ORUFI05G04670
Oryza rufipogon
ORUFI05G04670
N
0.850
OLONG_015419
Oryza longistaminata
OLONG_015419
N
0.850
OBART05G04450
Oryza barthii
OBART05G04450
N
0.850
LPERR05G03980
Leersia perrieri
LPERR05G03980
N
0.850
GLYMA02G15780
Glycine max
GLYMA02G15780
I
0.850
OGLUM05G04370
Oryza glumaepatula
OGLUM05G04370
N
0.850
MTR_4g087920
Medicago truncatula
MTR_4g087920
I
0.850
ONIVA05G04820
Oryza nivara
ONIVA05G04820
N
0.850
OMERI05G04410
Oryza meridionalis
OMERI05G04410
N
0.850
Cla019977
Citrullus lanatus
Cla019977
I
0.849
Cucsa.213230
Cucumis sativus
Cucsa.213230
I
0.849
MDP0000249969
Malus domestica
MDP0000249969
I
0.849
Pavir.J32610
Panicum virgatum
Pavir.J32610
N
0.848
Pavir.Ca01107
Panicum virgatum
Pavir.Ca01107
I
0.848
Si012213m.g
Setaria italica
Si012213m.g
N
0.848
Pavir.Ea00439
Panicum virgatum
Pavir.Ea00439
I
0.848
ORUFI01G04050
Oryza rufipogon
ORUFI01G04050
N
0.848
OBART01G03950
Oryza barthii
OBART01G03950
N
0.848
Si002655m.g
Setaria italica
Si002655m.g
I
0.848
OMERI01G03850
Oryza meridionalis
OMERI01G03850
N
0.848
OB01G13800
Oryza brachyantha
OB01G13800
N
0.848
LPERR01G03590
Leersia perrieri
LPERR01G03590
I
0.848
BRADI2G03830
Brachypodium distachyon
BRADI2G03830
I
0.848
GRMZM2G088443
Zea mays
GRMZM2G088443
I
0.848
GRMZM2G369629
Zea mays
GRMZM2G369629
N
0.848
ONIVA01G04390
Oryza nivara
ONIVA01G04390
N
0.848
OGLUM01G04250
Oryza glumaepatula
OGLUM01G04250
N
0.848
OPUNC01G03610
Oryza punctata
OPUNC01G03610
N
0.848
Sb03g005250
Sorghum bicolor
Sb03g005250
N
0.848
Sb09g004820
Sorghum bicolor
Sb09g004820
N
0.848
BGIOSGA002833
Oryza indica
BGIOSGA002833
N
0.848
ORGLA01G0034700
Oryza glaberrima
ORGLA01G0034700
N
0.848
evm.TU.supercontig_21.7
Carica papaya
evm.TU.supercontig_21.7
N
0.847
29900.m001610
Ricinus communis
29900.m001610
I
0.846
Pavir.Eb00095
Panicum virgatum
Pavir.Eb00095
I
0.844
GRMZM2G016039
Zea mays
GRMZM2G016039
I
0.844
TRAES3BF011300020CFD_g
Triticum aestivum
TRAES3BF011300020CFD_g
I
0.844
Sb03g001730
Sorghum bicolor
Sb03g001730
I
0.844
gene29828-v1.0-hybrid
Fragaria vesca
gene29828-v1.0-hybrid
I
0.844
MLOC_64390
Hordeum vulgare
MLOC_64390
I
0.844
GRMZM2G166642
Zea mays
GRMZM2G166642
I
0.844
Pavir.Ea00157
Panicum virgatum
Pavir.Ea00157
I
0.844