CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lus10007974.g
(
Linum usitatissimum
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Lus10007974.g
T050164_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
fgenesh1_pg.scaffold_37000071
M01757_2.00
Physcomitrella patens
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8584
0.876
0.880
BIM1
M01710_2.00
Arabidopsis thaliana
NCRCGTGNNN
NNNCACGYGN
PBM
Weirauch et al.(2014)
pTH8114
0.848
0.900
BIM1
M06739_2.00
Arabidopsis thaliana
CACGTGAYNHNNNH
DNNNDNRTCACGTG
Dap-seq
OMalley et al.(2016)
BIM1_col_a
0.848
0.900
BIM1
M06740_2.00
Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN
NNNDNDNDNDDRKCACGTGMBN
Dap-seq
OMalley et al.(2016)
BIM1_colamp_a
0.848
0.900
BIM1
M09787_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BIM1_01
0.848
0.900
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10007974
bHLH
290
339
PRSKHSATEQRRRSKINDRQMLREIIPHGDQKRDKASFLLEVIEYIQFLH
Links
Other
bHLH
family TFs
Other
Linum usitatissimum
TFs
121 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Lus10013502.g
Linum usitatissimum
Lus10013502.g
I
0.914
30138.m003913
Ricinus communis
30138.m003913
I
0.902
BIM1
Vitis vinifera
VIT_17s0000g04790
I
0.878
cassava43379.valid.m1
Manihot esculenta
cassava43379.valid.m1
I
0.878
cassava29318.valid.m1
Manihot esculenta
cassava29318.valid.m1
I
0.878
Solyc06g069370.2
Solanum lycopersicum
Solyc06g069370.2
I
0.878
MTR_4g110040
Medicago truncatula
MTR_4g110040
I
0.878
Ciclev10020248m.g
Citrus clementina
Ciclev10020248m.g
I
0.878
TCM_014392
Theobroma cacao
TCM_014392
I
0.878
GLYMA05G07490
Glycine max
GLYMA05G07490
I
0.878
SapurV1A.0868s0010
Salix purpurea
SapurV1A.0868s0010
I
0.878
POPTR_0015s03550
Populus trichocarpa
POPTR_0015s03550
I
0.878
orange1.1g038451m.g
Citrus sinensis
orange1.1g038451m.g
I
0.878
PRUPE_ppa003436mg
Prunus persica
PRUPE_ppa003436mg
I
0.878
evm.TU.supercontig_3.225
Carica papaya
evm.TU.supercontig_3.225
I
0.878
SapurV1A.0178s0150
Salix purpurea
SapurV1A.0178s0150
I
0.878
LPERR08G15680
Leersia perrieri
LPERR08G15680
I
0.876
OPUNC08G16820
Oryza punctata
OPUNC08G16820
I
0.876
ONIVA08G20800
Oryza nivara
ONIVA08G20800
I
0.876
OGLUM08G19830
Oryza glumaepatula
OGLUM08G19830
I
0.876
OB08G25940
Oryza brachyantha
OB08G25940
I
0.876
SELMODRAFT_451477
Selaginella moellendorffii
SELMODRAFT_451477
I
0.876
BGIOSGA028888
Oryza indica
BGIOSGA028888
I
0.876
ORGLA08G0164200
Oryza glaberrima
ORGLA08G0164200
I
0.876
fgenesh1_pg.scaffold_37000071
Physcomitrella patens
fgenesh1_pg.scaffold_37000071
D
0.876
gw1.90.123.1
Physcomitrella patens
gw1.90.123.1
I
0.876
ORUFI08G21030
Oryza rufipogon
ORUFI08G21030
I
0.876
BRADI3G38970
Brachypodium distachyon
BRADI3G38970
I
0.876
estExt_fgenesh1_pg.C_2110039
Physcomitrella patens
estExt_fgenesh1_pg.C_2110039
I
0.876
OLONG_003583
Oryza longistaminata
OLONG_003583
I
0.876
OS08G0490000
Oryza sativa
OS08G0490000
I
0.876
AMTR_s00006p00250310
Amborella trichopoda
AMTR_s00006p00250310
I
0.876
SELMODRAFT_451475
Selaginella moellendorffii
SELMODRAFT_451475
I
0.876
GLYMA17G08980
Glycine max
GLYMA17G08980
I
0.867
Cucsa.198520
Cucumis sativus
Cucsa.198520
I
0.867
GSMUA_Achr9G28050_001
Musa acuminata
GSMUA_Achr9G28050_001
I
0.866
GSMUA_Achr3G10640_001
Musa acuminata
GSMUA_Achr3G10640_001
I
0.866
Ciclev10032020m.g
Citrus clementina
Ciclev10032020m.g
I
0.858
mgf013208m
Mimulus guttatus
mgf013208m
I
0.858
SapurV1A.0084s0570
Salix purpurea
SapurV1A.0084s0570
I
0.858
gene04534-v1.0-hybrid
Fragaria vesca
gene04534-v1.0-hybrid
I
0.858
POPTR_0010s14740
Populus trichocarpa
POPTR_0010s14740
I
0.858
orange1.1g019960m.g
Citrus sinensis
orange1.1g019960m.g
I
0.858
MDP0000261293
Malus domestica
MDP0000261293
I
0.858
Cucsa.328060
Cucumis sativus
Cucsa.328060
I
0.858
cassava43370.valid.m1
Manihot esculenta
cassava43370.valid.m1
I
0.858
30138.m003899
Ricinus communis
30138.m003899
I
0.858
Cla022382
Citrullus lanatus
Cla022382
I
0.858
POPTR_0008s11120
Populus trichocarpa
POPTR_0008s11120
I
0.858
cassava29314.valid.m1
Manihot esculenta
cassava29314.valid.m1
I
0.858
Solyc04g005280.2
Solanum lycopersicum
Solyc04g005280.2
I
0.858
Solyc05g011810.2
Solanum lycopersicum
Solyc05g011810.2
I
0.858
BIM2
Vitis vinifera
VIT_01s0010g00540
I
0.858
PRUPE_ppa008387mg
Prunus persica
PRUPE_ppa008387mg
I
0.858
PGSC0003DMG400019654
Solanum tuberosum
PGSC0003DMG400019654
I
0.858
GLYMA02G13670
Glycine max
GLYMA02G13670
I
0.858
PGSC0003DMG400001919
Solanum tuberosum
PGSC0003DMG400001919
I
0.858
PK01364.1
Cannabis sativa
PK01364.1
I
0.856
SapurV1A.0060s0510
Salix purpurea
SapurV1A.0060s0510
I
0.856
GSMUA_Achr9G19110_001
Musa acuminata
GSMUA_Achr9G19110_001
I
0.854
GSMUA_Achr4G19530_001
Musa acuminata
GSMUA_Achr4G19530_001
I
0.854
GSMUA_Achr2G05450_001
Musa acuminata
GSMUA_Achr2G05450_001
I
0.854
OB02G38020
Oryza brachyantha
OB02G38020
I
0.852
ORGLA02G0264700
Oryza glaberrima
ORGLA02G0264700
I
0.852
Pavir.Ab03017
Panicum virgatum
Pavir.Ab03017
I
0.852
BGIOSGA005697
Oryza indica
BGIOSGA005697
I
0.852
Pavir.Aa00700
Panicum virgatum
Pavir.Aa00700
I
0.852
GRMZM2G317450
Zea mays
GRMZM2G317450
I
0.852
Si016505m.g
Setaria italica
Si016505m.g
I
0.852
OS02G0726700
Oryza sativa
OS02G0726700
I
0.852
Sb04g029270
Sorghum bicolor
Sb04g029270
I
0.852
GRMZM2G009478
Zea mays
GRMZM2G009478
I
0.850
GRMZM2G089501
Zea mays
GRMZM2G089501
I
0.850
ORGLA09G0105800
Oryza glaberrima
ORGLA09G0105800
I
0.850
Pavir.J04606
Panicum virgatum
Pavir.J04606
I
0.850
ORUFI09G14830
Oryza rufipogon
ORUFI09G14830
I
0.850
F775_23096
Aegilops tauschii
F775_23096
I
0.850
Aquca_006_00387
Aquilegia coerulea
Aquca_006_00387
I
0.850
BGIOSGA030958
Oryza indica
BGIOSGA030958
I
0.850
BRADI4G32967
Brachypodium distachyon
BRADI4G32967
I
0.850
Sb02g027460
Sorghum bicolor
Sb02g027460
I
0.850
ORGLA06G0286200
Oryza glaberrima
ORGLA06G0286200
I
0.850
Traes_5AL_0D4BDDDCD
Triticum aestivum
Traes_5AL_0D4BDDDCD
I
0.850
Traes_5BL_AAC9C7238
Triticum aestivum
Traes_5BL_AAC9C7238
I
0.850
OMERI09G10560
Oryza meridionalis
OMERI09G10560
I
0.850
ONIVA09G14370
Oryza nivara
ONIVA09G14370
I
0.850
OPUNC09G12310
Oryza punctata
OPUNC09G12310
I
0.850
Traes_5DL_E96693018
Triticum aestivum
Traes_5DL_E96693018
I
0.850
OLONG_020060
Oryza longistaminata
OLONG_020060
I
0.850
LPERR09G10080
Leersia perrieri
LPERR09G10080
I
0.850
Si029604m.g
Setaria italica
Si029604m.g
I
0.850
OBART09G13850
Oryza barthii
OBART09G13850
I
0.850
OGLUM09G14430
Oryza glumaepatula
OGLUM09G14430
I
0.850
OS09G0475400
Oryza sativa
OS09G0475400
I
0.850
Bo9g174770
Brassica oleracea
Bo9g174770
I
0.848
PK10562.1
Cannabis sativa
PK10562.1
I
0.848
Bo5g020460
Brassica oleracea
Bo5g020460
I
0.848
BIM1
Arabidopsis thaliana
AT5G08130
D
0.848
Thhalv10013181m.g
Eutrema salsugineum
Thhalv10013181m.g
I
0.848
Bo2g161110
Brassica oleracea
Bo2g161110
I
0.848
Bo3g004690
Brassica oleracea
Bo3g004690
I
0.848
mgf001137m
Mimulus guttatus
mgf001137m
I
0.848
Solyc03g114720.2
Solanum lycopersicum
Solyc03g114720.2
I
0.848
mgf005849m
Mimulus guttatus
mgf005849m
I
0.848
Cucsa.113490
Cucumis sativus
Cucsa.113490
I
0.848
BIM1
Arabidopsis lyrata
scaffold_600819.1
I
0.848
Cla018818
Citrullus lanatus
Cla018818
I
0.848
Eucgr.B00645
Eucalyptus grandis
Eucgr.B00645
I
0.848
Aquca_002_00952
Aquilegia coerulea
Aquca_002_00952
I
0.848
Bra029354
Brassica rapa
Bra029354
I
0.848
Carubv10000655m.g
Capsella rubella
Carubv10000655m.g
I
0.848
Bostr.13129s0152
Boechera stricta
Bostr.13129s0152
I
0.848
Cagra.1365s0019
Capsella grandiflora
Cagra.1365s0019
I
0.848
Bra009322
Brassica rapa
Bra009322
I
0.848
GLYMA01G09010
Glycine max
GLYMA01G09010
I
0.847
Sb07g028860
Sorghum bicolor
Sb07g028860
I
0.846
Si013622m.g
Setaria italica
Si013622m.g
I
0.846
Pavir.J38910
Panicum virgatum
Pavir.J38910
I
0.846
Pavir.Fb01833
Panicum virgatum
Pavir.Fb01833
I
0.846
Bra005969
Brassica rapa
Bra005969
I
0.846
evm.TU.supercontig_289.6
Carica papaya
evm.TU.supercontig_289.6
I
0.845