Lus10013502.g (Linum usitatissimum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Lus10013502.g T050188_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
fgenesh1_pg.scaffold_37000071
M01757_2.00
Physcomitrella patens
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8584
0.876 0.880
BIM1
M01710_2.00
Arabidopsis thaliana
NCRCGTGNNN

NNNCACGYGN
PBM
Weirauch et al.(2014)
pTH8114
0.848 0.900
BIM1
M06739_2.00
Arabidopsis thaliana
CACGTGAYNHNNNH

DNNNDNRTCACGTG
Dap-seq
OMalley et al.(2016)
BIM1_col_a
0.848 0.900
BIM1
M06740_2.00
Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN

NNNDNDNDNDDRKCACGTGMBN
Dap-seq
OMalley et al.(2016)
BIM1_colamp_a
0.848 0.900
BIM1
M09787_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BIM1_01
0.848 0.900
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10013502 bHLH 281 330

Links

Other bHLH family TFs
Other Linum usitatissimum TFs

121 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Lus10007974.g Linum usitatissimum Lus10007974.g I 0.914
30138.m003913 Ricinus communis 30138.m003913 I 0.902
BIM1 Vitis vinifera VIT_17s0000g04790 I 0.878
cassava43379.valid.m1 Manihot esculenta cassava43379.valid.m1 I 0.878
cassava29318.valid.m1 Manihot esculenta cassava29318.valid.m1 I 0.878
Solyc06g069370.2 Solanum lycopersicum Solyc06g069370.2 I 0.878
MTR_4g110040 Medicago truncatula MTR_4g110040 I 0.878
Ciclev10020248m.g Citrus clementina Ciclev10020248m.g I 0.878
TCM_014392 Theobroma cacao TCM_014392 I 0.878
GLYMA05G07490 Glycine max GLYMA05G07490 I 0.878
SapurV1A.0868s0010 Salix purpurea SapurV1A.0868s0010 I 0.878
POPTR_0015s03550 Populus trichocarpa POPTR_0015s03550 I 0.878
orange1.1g038451m.g Citrus sinensis orange1.1g038451m.g I 0.878
PRUPE_ppa003436mg Prunus persica PRUPE_ppa003436mg I 0.878
evm.TU.supercontig_3.225 Carica papaya evm.TU.supercontig_3.225 I 0.878
SapurV1A.0178s0150 Salix purpurea SapurV1A.0178s0150 I 0.878
LPERR08G15680 Leersia perrieri LPERR08G15680 I 0.876
OPUNC08G16820 Oryza punctata OPUNC08G16820 I 0.876
ONIVA08G20800 Oryza nivara ONIVA08G20800 I 0.876
OGLUM08G19830 Oryza glumaepatula OGLUM08G19830 I 0.876
OB08G25940 Oryza brachyantha OB08G25940 I 0.876
SELMODRAFT_451477 Selaginella moellendorffii SELMODRAFT_451477 I 0.876
BGIOSGA028888 Oryza indica BGIOSGA028888 I 0.876
ORGLA08G0164200 Oryza glaberrima ORGLA08G0164200 I 0.876
fgenesh1_pg.scaffold_37000071 Physcomitrella patens fgenesh1_pg.scaffold_37000071 D 0.876
gw1.90.123.1 Physcomitrella patens gw1.90.123.1 I 0.876
ORUFI08G21030 Oryza rufipogon ORUFI08G21030 I 0.876
BRADI3G38970 Brachypodium distachyon BRADI3G38970 I 0.876
estExt_fgenesh1_pg.C_2110039 Physcomitrella patens estExt_fgenesh1_pg.C_2110039 I 0.876
OLONG_003583 Oryza longistaminata OLONG_003583 I 0.876
OS08G0490000 Oryza sativa OS08G0490000 I 0.876
AMTR_s00006p00250310 Amborella trichopoda AMTR_s00006p00250310 I 0.876
SELMODRAFT_451475 Selaginella moellendorffii SELMODRAFT_451475 I 0.876
GLYMA17G08980 Glycine max GLYMA17G08980 I 0.867
Cucsa.198520 Cucumis sativus Cucsa.198520 I 0.867
GSMUA_Achr9G28050_001 Musa acuminata GSMUA_Achr9G28050_001 I 0.866
GSMUA_Achr3G10640_001 Musa acuminata GSMUA_Achr3G10640_001 I 0.866
Ciclev10032020m.g Citrus clementina Ciclev10032020m.g I 0.858
mgf013208m Mimulus guttatus mgf013208m I 0.858
SapurV1A.0084s0570 Salix purpurea SapurV1A.0084s0570 I 0.858
gene04534-v1.0-hybrid Fragaria vesca gene04534-v1.0-hybrid I 0.858
POPTR_0010s14740 Populus trichocarpa POPTR_0010s14740 I 0.858
orange1.1g019960m.g Citrus sinensis orange1.1g019960m.g I 0.858
MDP0000261293 Malus domestica MDP0000261293 I 0.858
Cucsa.328060 Cucumis sativus Cucsa.328060 I 0.858
cassava43370.valid.m1 Manihot esculenta cassava43370.valid.m1 I 0.858
30138.m003899 Ricinus communis 30138.m003899 I 0.858
Cla022382 Citrullus lanatus Cla022382 I 0.858
POPTR_0008s11120 Populus trichocarpa POPTR_0008s11120 I 0.858
cassava29314.valid.m1 Manihot esculenta cassava29314.valid.m1 I 0.858
Solyc04g005280.2 Solanum lycopersicum Solyc04g005280.2 I 0.858
Solyc05g011810.2 Solanum lycopersicum Solyc05g011810.2 I 0.858
BIM2 Vitis vinifera VIT_01s0010g00540 I 0.858
PRUPE_ppa008387mg Prunus persica PRUPE_ppa008387mg I 0.858
PGSC0003DMG400019654 Solanum tuberosum PGSC0003DMG400019654 I 0.858
GLYMA02G13670 Glycine max GLYMA02G13670 I 0.858
PGSC0003DMG400001919 Solanum tuberosum PGSC0003DMG400001919 I 0.858
PK01364.1 Cannabis sativa PK01364.1 I 0.856
SapurV1A.0060s0510 Salix purpurea SapurV1A.0060s0510 I 0.856
GSMUA_Achr9G19110_001 Musa acuminata GSMUA_Achr9G19110_001 I 0.854
GSMUA_Achr4G19530_001 Musa acuminata GSMUA_Achr4G19530_001 I 0.854
GSMUA_Achr2G05450_001 Musa acuminata GSMUA_Achr2G05450_001 I 0.854
OB02G38020 Oryza brachyantha OB02G38020 I 0.852
ORGLA02G0264700 Oryza glaberrima ORGLA02G0264700 I 0.852
Pavir.Ab03017 Panicum virgatum Pavir.Ab03017 I 0.852
BGIOSGA005697 Oryza indica BGIOSGA005697 I 0.852
Pavir.Aa00700 Panicum virgatum Pavir.Aa00700 I 0.852
GRMZM2G317450 Zea mays GRMZM2G317450 I 0.852
Si016505m.g Setaria italica Si016505m.g I 0.852
OS02G0726700 Oryza sativa OS02G0726700 I 0.852
Sb04g029270 Sorghum bicolor Sb04g029270 I 0.852
GRMZM2G009478 Zea mays GRMZM2G009478 I 0.850
GRMZM2G089501 Zea mays GRMZM2G089501 I 0.850
ORGLA09G0105800 Oryza glaberrima ORGLA09G0105800 I 0.850
Pavir.J04606 Panicum virgatum Pavir.J04606 I 0.850
ORUFI09G14830 Oryza rufipogon ORUFI09G14830 I 0.850
F775_23096 Aegilops tauschii F775_23096 I 0.850
Aquca_006_00387 Aquilegia coerulea Aquca_006_00387 I 0.850
BGIOSGA030958 Oryza indica BGIOSGA030958 I 0.850
BRADI4G32967 Brachypodium distachyon BRADI4G32967 I 0.850
Sb02g027460 Sorghum bicolor Sb02g027460 I 0.850
ORGLA06G0286200 Oryza glaberrima ORGLA06G0286200 I 0.850
Traes_5AL_0D4BDDDCD Triticum aestivum Traes_5AL_0D4BDDDCD I 0.850
Traes_5BL_AAC9C7238 Triticum aestivum Traes_5BL_AAC9C7238 I 0.850
OMERI09G10560 Oryza meridionalis OMERI09G10560 I 0.850
ONIVA09G14370 Oryza nivara ONIVA09G14370 I 0.850
OPUNC09G12310 Oryza punctata OPUNC09G12310 I 0.850
Traes_5DL_E96693018 Triticum aestivum Traes_5DL_E96693018 I 0.850
OLONG_020060 Oryza longistaminata OLONG_020060 I 0.850
LPERR09G10080 Leersia perrieri LPERR09G10080 I 0.850
Si029604m.g Setaria italica Si029604m.g I 0.850
OBART09G13850 Oryza barthii OBART09G13850 I 0.850
OGLUM09G14430 Oryza glumaepatula OGLUM09G14430 I 0.850
OS09G0475400 Oryza sativa OS09G0475400 I 0.850
Bo9g174770 Brassica oleracea Bo9g174770 I 0.848
PK10562.1 Cannabis sativa PK10562.1 I 0.848
Bo5g020460 Brassica oleracea Bo5g020460 I 0.848
BIM1 Arabidopsis thaliana AT5G08130 D 0.848
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I 0.848
Bo2g161110 Brassica oleracea Bo2g161110 I 0.848
Bo3g004690 Brassica oleracea Bo3g004690 I 0.848
mgf001137m Mimulus guttatus mgf001137m I 0.848
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I 0.848
mgf005849m Mimulus guttatus mgf005849m I 0.848
Cucsa.113490 Cucumis sativus Cucsa.113490 I 0.848
BIM1 Arabidopsis lyrata scaffold_600819.1 I 0.848
Cla018818 Citrullus lanatus Cla018818 I 0.848
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I 0.848
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I 0.848
Bra029354 Brassica rapa Bra029354 I 0.848
Carubv10000655m.g Capsella rubella Carubv10000655m.g I 0.848
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I 0.848
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I 0.848
Bra009322 Brassica rapa Bra009322 I 0.848
GLYMA01G09010 Glycine max GLYMA01G09010 I 0.847
Sb07g028860 Sorghum bicolor Sb07g028860 I 0.846
Si013622m.g Setaria italica Si013622m.g I 0.846
Pavir.J38910 Panicum virgatum Pavir.J38910 I 0.846
Pavir.Fb01833 Panicum virgatum Pavir.Fb01833 I 0.846
Bra005969 Brassica rapa Bra005969 I 0.846
evm.TU.supercontig_289.6 Carica papaya evm.TU.supercontig_289.6 I 0.845