Lus10029805.g (Linum usitatissimum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Lus10029805.g T050250_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PIF3
M00854_2.00
Arabidopsis thaliana
CACGTGSNN

NNSCACGTG
PBM
Franco-Zorrilla et al.(2014)
PIF3
0.901 0.880
PIF3
M00722_2.00
Arabidopsis thaliana
NCACRTN

NAYGTGN
PBM
Chang et al.(2013)
pTH8200
0.901 0.880
PK05451.1
M01120_2.00
Cannabis sativa
YCACGTGM

KCACGTGR
PBM
Lambert et al.(2019)
pTH10100
0.901 0.880
PIF3
M08045_2.00
Arabidopsis thaliana
HCACGTGGVH

DBCCACGTGD
ChIP-seq
Mathelier et al.(2014)
MA0560.1
0.901 0.880
PIF3
M09780_2.00
Arabidopsis thaliana
BDRRRVCACGTGRVSHCD

HGDSBYCACGTGBYYYHV
Transfac
Matys et al.(2006)
P$PIF3_01
0.901 0.880
PIF3
M09781_2.00
Arabidopsis thaliana
DDDVCCACGTGGVMVNB

VNBKBCCACGTGGBHHH
Transfac
Matys et al.(2006)
P$PIF3_02
0.901 0.880
SPT
M01709_2.00
Arabidopsis thaliana
NCACGTGSN

NSCACGTGN
PBM
Weirauch et al.(2014)
pTH8111
0.890 0.880
e_gw1.209.40.1
M01756_2.00
Physcomitrella patens
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8070
0.885 0.680
LRL2
M06738_2.00
Arabidopsis thaliana
CACGTGSVDMNCACG

CGTGNKHBSCACGTG
Dap-seq
OMalley et al.(2016)
bHLH69_col_a
0.885 0.640
PIF4
M08046_2.00
Arabidopsis thaliana
CACGTGSV

BSCACGTG
ChIP-seq
Mathelier et al.(2014)
MA0561.1
0.881 0.900
PIF5
M08047_2.00
Arabidopsis thaliana
YCACRTGS

SCAYGTGR
ChIP-seq
Mathelier et al.(2014)
MA0562.1
0.868 0.880
PIF5
M09452_2.00
Arabidopsis thaliana
NNBCAYGTGV

BCACRTGVNN
Misc
Heinz et al.(2010)
Arabidopsis-PIF5ox_GSE35062
0.868 0.880
PIF1
M01703_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8733
0.868 0.840
PIF1
M08404_2.00
Arabidopsis thaliana
NCACGTGWSNYNHH

DDNRNSWCACGTGN
ChIP-chip
Mathelier et al.(2014)
MA0552.1
0.868 0.840
PIF1
M09783_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PIF1_01
0.868 0.840
UNE10
M01705_2.00
Arabidopsis thaliana
HCACGTGM

KCACGTGD
PBM
Weirauch et al.(2014)
pTH8112
0.853 0.700
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10029805 bHLH 264 313

Links

Other bHLH family TFs
Other Linum usitatissimum TFs

604 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMTR_s00079p00088960 Amborella trichopoda AMTR_s00079p00088960 N 0.000
Aquca_026_00293 Aquilegia coerulea Aquca_026_00293 N 0.000
LBD42 Arabidopsis thaliana AT1G68510 N 0.000
Bo6g106960 Brassica oleracea Bo6g106960 N 0.000
Bostr.26959s0040 Boechera stricta Bostr.26959s0040 N 0.000
Bra004315 Brassica rapa Bra004315 N 0.000
Cagra.3364s0006 Capsella grandiflora Cagra.3364s0006 N 0.000
Carubv10022391m.g Capsella rubella Carubv10022391m.g N 0.000
cassava6185.valid.m1 Manihot esculenta cassava6185.valid.m1 N 0.000
chr1.LjT23D08.90.nc Lotus japonicus chr1.LjT23D08.90.nc N 0.000
Ciclev10016422m.g Citrus clementina Ciclev10016422m.g N 0.000
Ciclev10022068m.g Citrus clementina Ciclev10022068m.g N 0.000
Cla007208 Citrullus lanatus Cla007208 N 0.000
Cucsa.031350 Cucumis sativus Cucsa.031350 N 0.000
Eucgr.G02321 Eucalyptus grandis Eucgr.G02321 N 0.000
Eucgr.J01501 Eucalyptus grandis Eucgr.J01501 N 0.000
Eucgr.K02222 Eucalyptus grandis Eucgr.K02222 N 0.000
evm.TU.supercontig_282.15 Carica papaya evm.TU.supercontig_282.15 N 0.000
LBD42 Arabidopsis lyrata fgenesh2_kg.2__1100__AT1G68510.1 N 0.000
gene03741-v1.0-hybrid Fragaria vesca gene03741-v1.0-hybrid N 0.000
GLYMA13G07590 Glycine max GLYMA13G07590 N 0.000
Gorai.008G056000 Gossypium raimondii Gorai.008G056000 N 0.000
GSMUA_Achr3G29520_001 Musa acuminata GSMUA_Achr3G29520_001 N 0.000
GSMUA_Achr4G06820_001 Musa acuminata GSMUA_Achr4G06820_001 N 0.000
GSMUA_Achr4G13790_001 Musa acuminata GSMUA_Achr4G13790_001 N 0.000
GSMUA_Achr9G00580_001 Musa acuminata GSMUA_Achr9G00580_001 N 0.000
Lus10028470.g Linum usitatissimum Lus10028470.g N 0.000
MDP0000131978 Malus domestica MDP0000131978 N 0.000
MDP0000136037 Malus domestica MDP0000136037 N 0.000
MDP0000233303 Malus domestica MDP0000233303 N 0.000
MDP0000881409 Malus domestica MDP0000881409 N 0.000
MTR_6g018270 Medicago truncatula MTR_6g018270 N 0.000
MTR_7g007010 Medicago truncatula MTR_7g007010 N 0.000
orange1.1g038007m.g Citrus sinensis orange1.1g038007m.g N 0.000
orange1.1g045357m.g Citrus sinensis orange1.1g045357m.g N 0.000
PK03169.1 Cannabis sativa PK03169.1 N 0.000
Pm029059 Prunus mume Pm029059 N 0.000
POPTR_0004s09920 Populus trichocarpa POPTR_0004s09920 N 0.000
POPTR_0005s15670 Populus trichocarpa POPTR_0005s15670 N 0.000
POPTR_0008s11950 Populus trichocarpa POPTR_0008s11950 N 0.000
POPTR_0010s13480 Populus trichocarpa POPTR_0010s13480 N 0.000
PRUPE_ppa009213mg Prunus persica PRUPE_ppa009213mg N 0.000
PRUPE_ppa011233mg Prunus persica PRUPE_ppa011233mg N 0.000
SapurV1A.0079s0150 Salix purpurea SapurV1A.0079s0150 N 0.000
SapurV1A.0315s0090 Salix purpurea SapurV1A.0315s0090 N 0.000
SapurV1A.0851s0010 Salix purpurea SapurV1A.0851s0010 N 0.000
TCM_012338 Theobroma cacao TCM_012338 N 0.000
TCM_019459 Theobroma cacao TCM_019459 N 0.000
VIT_14s0006g02950 Vitis vinifera VIT_14s0006g02950 N 0.000