CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Lus10033120.g
(
Linum usitatissimum
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Lus10033120.g
T050267_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BPE
M01700_2.00
Arabidopsis thaliana
NCACGTNNN
NNNACGTGN
PBM
Weirauch et al.(2014)
pTH7290
0.914
0.960
BPE
M06726_2.00
Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB
VWNNNNNCACGTGNNNNNNNN
Dap-seq
OMalley et al.(2016)
bHLH31_col
0.914
0.960
BHLH78
M01713_2.00
Arabidopsis thaliana
GCACGTGC
GCACGTGC
PBM
Weirauch et al.(2014)
pTH7666
0.901
0.880
PK06517.1
M01122_2.00
Cannabis sativa
NCACGTGC
GCACGTGN
PBM
Lambert et al.(2019)
pTH10104
0.875
0.860
BHLH49
M01052_2.00
Arabidopsis thaliana
NNCACGTGCN
NGCACGTGNN
PBM
Sullivan et al.(2014)
pTH7309
0.875
0.840
PK05923.1
M01121_2.00
Cannabis sativa
NNNNNNN
NNNNNNN
PBM
Lambert et al.(2019)
pTH11368
0.868
0.800
BHLH77
M06736_2.00
Arabidopsis thaliana
NKCACGTGVHNWHNB
VNDWNDBCACGTGMN
Dap-seq
OMalley et al.(2016)
bHLH77_col_a
0.862
0.840
gw1.270.82.1
M01758_2.00
Physcomitrella patens
NCACGTGH
DCACGTGN
PBM
Weirauch et al.(2014)
pTH8457
0.862
0.820
BHLH74
M06720_2.00
Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW
WNNNNBCACGTGNNHNHSDHS
Dap-seq
OMalley et al.(2016)
bHLH74_col_a
0.862
0.800
BHLH74
M06721_2.00
Arabidopsis thaliana
CACGTGAY
RTCACGTG
Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a
0.862
0.800
BEE2
M01708_2.00
Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8094
0.851
0.820
AT2G18300
M01702_2.00
Arabidopsis thaliana
NBCACGTGCNNN
NNNGCACGTGVN
PBM
Weirauch et al.(2014)
pTH7289
0.851
0.800
AT2G18300
M06729_2.00
Arabidopsis thaliana
ACTGGT
ACCAGT
Dap-seq
OMalley et al.(2016)
bHLH64_col_a
0.851
0.800
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Lus10033120
bHLH
145
194
TDCHSLAERARREKISERMKLLQDLVPGCNKVIGKALVLDEIINYIQSLQ
Links
Other
bHLH
family TFs
Other
Linum usitatissimum
TFs
874 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Invalid Input OrderBy