Lus10041592.g (Linum usitatissimum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Lus10041592.g T050296_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SPT
M01709_2.00
Arabidopsis thaliana
NCACGTGSN

NSCACGTGN
PBM
Weirauch et al.(2014)
pTH8111
0.914 0.939
e_gw1.209.40.1
M01756_2.00
Physcomitrella patens
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8070
0.885 0.653
LRL2
M06738_2.00
Arabidopsis thaliana
CACGTGSVDMNCACG

CGTGNKHBSCACGTG
Dap-seq
OMalley et al.(2016)
bHLH69_col_a
0.885 0.612
PIF3
M00854_2.00
Arabidopsis thaliana
CACGTGSNN

NNSCACGTG
PBM
Franco-Zorrilla et al.(2014)
PIF3
0.877 0.816
PIF3
M00722_2.00
Arabidopsis thaliana
NCACRTN

NAYGTGN
PBM
Chang et al.(2013)
pTH8200
0.877 0.816
PK05451.1
M01120_2.00
Cannabis sativa
YCACGTGM

KCACGTGR
PBM
Lambert et al.(2019)
pTH10100
0.877 0.816
PIF3
M08045_2.00
Arabidopsis thaliana
HCACGTGGVH

DBCCACGTGD
ChIP-seq
Mathelier et al.(2014)
MA0560.1
0.877 0.816
PIF3
M09780_2.00
Arabidopsis thaliana
BDRRRVCACGTGRVSHCD

HGDSBYCACGTGBYYYHV
Transfac
Matys et al.(2006)
P$PIF3_01
0.877 0.816
PIF3
M09781_2.00
Arabidopsis thaliana
DDDVCCACGTGGVMVNB

VNBKBCCACGTGGBHHH
Transfac
Matys et al.(2006)
P$PIF3_02
0.877 0.816
PIF4
M08046_2.00
Arabidopsis thaliana
CACGTGSV

BSCACGTG
ChIP-seq
Mathelier et al.(2014)
MA0561.1
0.857 0.796
BIM2
M01701_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8089
0.851 0.510
BIM2
M06727_2.00
Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN

NNNNNNNNNNNVDCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_colamp
0.851 0.510
BIM2
M06728_2.00
Arabidopsis thaliana
CACGTGMBNNNCVYV

BRBGNNNVKCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_col_v3b
0.851 0.510
PIF5
M08047_2.00
Arabidopsis thaliana
YCACRTGS

SCAYGTGR
ChIP-seq
Mathelier et al.(2014)
MA0562.1
0.844 0.776
PIF5
M09452_2.00
Arabidopsis thaliana
NNBCAYGTGV

BCACRTGVNN
Misc
Heinz et al.(2010)
Arabidopsis-PIF5ox_GSE35062
0.844 0.776
PIF1
M01703_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8733
0.844 0.755
PIF1
M08404_2.00
Arabidopsis thaliana
NCACGTGWSNYNHH

DDNRNSWCACGTGN
ChIP-chip
Mathelier et al.(2014)
MA0552.1
0.844 0.755
PIF1
M09783_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$PIF1_01
0.844 0.755
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10041592 bHLH 123 171

Links

Other bHLH family TFs
Other Linum usitatissimum TFs

551 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Aquca_005_00061 Aquilegia coerulea Aquca_005_00061 N 0.000
Aquca_012_00145 Aquilegia coerulea Aquca_012_00145 N 0.000
PK11198.1 Cannabis sativa PK11198.1 N 0.000
Eucgr.A01720 Eucalyptus grandis Eucgr.A01720 N 0.000
Eucgr.K00803 Eucalyptus grandis Eucgr.K00803 N 0.000
Eucgr.D01323 Eucalyptus grandis Eucgr.D01323 N 0.000
gene23919-v1.0-hybrid Fragaria vesca gene23919-v1.0-hybrid N 0.000
GLYMA06G45941 Glycine max GLYMA06G45941 N 0.000
GLYMA12G32130 Glycine max GLYMA12G32130 N 0.000
GLYMA12G10790 Glycine max GLYMA12G10790 N 0.000
Gorai.008G172400 Gossypium raimondii Gorai.008G172400 N 0.000
Gorai.010G252300 Gossypium raimondii Gorai.010G252300 N 0.000
Lus10014933.g Linum usitatissimum Lus10014933.g N 0.000
Lus10038822.g Linum usitatissimum Lus10038822.g N 0.000
MDP0000216918 Malus domestica MDP0000216918 N 0.000
MDP0000387366 Malus domestica MDP0000387366 N 0.000
MDP0000499190 Malus domestica MDP0000499190 N 0.000
cassava24286.valid.m1 Manihot esculenta cassava24286.valid.m1 N 0.000
cassava24285.valid.m1 Manihot esculenta cassava24285.valid.m1 N 0.000
cassava23226.valid.m1 Manihot esculenta cassava23226.valid.m1 N 0.000
cassava11157.m1 Manihot esculenta cassava11157.m1 N 0.000
cassava23225.valid.m1 Manihot esculenta cassava23225.valid.m1 N 0.000
MTR_2g088730 Medicago truncatula MTR_2g088730 N 0.000
MTR_4g046737 Medicago truncatula MTR_4g046737 N 0.000
mgf009009m Mimulus guttatus mgf009009m N 0.000
GSMUA_Achr10G09220_001 Musa acuminata GSMUA_Achr10G09220_001 N 0.000
PDK_20s1307674g001 Phoenix dactylifera PDK_20s1307674g001 N 0.000
PDK_20s1335581g001 Phoenix dactylifera PDK_20s1335581g001 N 0.000
POPTR_0004s02060 Populus trichocarpa POPTR_0004s02060 N 0.000
POPTR_0007s02510 Populus trichocarpa POPTR_0007s02510 N 0.000
POPTR_0011s00390 Populus trichocarpa POPTR_0011s00390 N 0.000
POPTR_0017s06470 Populus trichocarpa POPTR_0017s06470 N 0.000
PRUPE_ppa014728mg Prunus persica PRUPE_ppa014728mg N 0.000
30086.m000210 Ricinus communis 30086.m000210 N 0.000
29842.m003644 Ricinus communis 29842.m003644 N 0.000
SapurV1A.0722s0160 Salix purpurea SapurV1A.0722s0160 N 0.000
SapurV1A.1106s0040 Salix purpurea SapurV1A.1106s0040 N 0.000
SapurV1A.0928s0060 Salix purpurea SapurV1A.0928s0060 N 0.000
SapurV1A.0779s0100 Salix purpurea SapurV1A.0779s0100 N 0.000
SapurV1A.0610s0050 Salix purpurea SapurV1A.0610s0050 N 0.000
SapurV1A.0345s0340 Salix purpurea SapurV1A.0345s0340 N 0.000
Solyc07g052490.2 Solanum lycopersicum Solyc07g052490.2 N 0.000
PGSC0003DMG400024072 Solanum tuberosum PGSC0003DMG400024072 N 0.000
TCM_011327 Theobroma cacao TCM_011327 N 0.000
TCM_030224 Theobroma cacao TCM_030224 N 0.000
VIT_10s0116g01760 Vitis vinifera VIT_10s0116g01760 N 0.000
VIT_12s0059g02360 Vitis vinifera VIT_12s0059g02360 N 0.000
VIT_10s0116g00500 Vitis vinifera VIT_10s0116g00500 N 0.000