Lus10043199.g (Linum usitatissimum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Lus10043199.g T050306_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
SCRM
M09784_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ICE1_01
0.884 0.958
AMS
M09782_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$AMS_01
0.877 0.854
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10043199 bHLH 347 394

Links

Other bHLH family TFs
Other Linum usitatissimum TFs

228 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AMS Arabidopsis thaliana AT2G16910 D 0.877
SCRM Arabidopsis thaliana AT3G26744 D 0.884
Bostr.13671s0164 Boechera stricta Bostr.13671s0164 I 0.884
estExt_fgenesh1_pg.C_1590022 Physcomitrella patens estExt_fgenesh1_pg.C_1590022 I 0.840
estExt_fgenesh1_pg.C_1240017 Physcomitrella patens estExt_fgenesh1_pg.C_1240017 I 0.857
e_gw1.25.105.1 Physcomitrella patens e_gw1.25.105.1 I 0.840
Cucsa.156040 Cucumis sativus Cucsa.156040 I 0.884
Cucsa.134750 Cucumis sativus Cucsa.134750 I 0.884
Cucsa.088960 Cucumis sativus Cucsa.088960 I 0.860
Cucsa.010660 Cucumis sativus Cucsa.010660 I 0.840
cassava7475.valid.m1 Manihot esculenta cassava7475.valid.m1 I 0.849
cassava37254.valid.m1 Manihot esculenta cassava37254.valid.m1 I 0.884
cassava2997.m1 Manihot esculenta cassava2997.m1 I 0.840
cassava2552.valid.m1 Manihot esculenta cassava2552.valid.m1 I 0.847
cassava2551.valid.m1 Manihot esculenta cassava2551.valid.m1 I 0.847
estExt_fgenesh1_pg.C_300202 Physcomitrella patens estExt_fgenesh1_pg.C_300202 I 0.884
estExt_Genewise1.C_510113 Physcomitrella patens estExt_Genewise1.C_510113 I 0.884
Bostr.0556s0344 Boechera stricta Bostr.0556s0344 I 0.884
Aquca_100_00035 Aquilegia coerulea Aquca_100_00035 I 0.884
Aquca_072_00056 Aquilegia coerulea Aquca_072_00056 I 0.857
Aquca_019_00147 Aquilegia coerulea Aquca_019_00147 I 0.860
Aquca_018_00039 Aquilegia coerulea Aquca_018_00039 I 0.840
mgf024029m Mimulus guttatus mgf024029m I 0.840
mgf018455m Mimulus guttatus mgf018455m I 0.847
mgf016462m Mimulus guttatus mgf016462m I 0.884
mgf015974m Mimulus guttatus mgf015974m I 0.884
mgf012194m Mimulus guttatus mgf012194m I 0.884
gw1.90.96.1 Physcomitrella patens gw1.90.96.1 I 0.857
gw1.257.54.1 Physcomitrella patens gw1.257.54.1 I 0.860
cassava17838.valid.m1 Manihot esculenta cassava17838.valid.m1 I 0.884
30198.m000869 Ricinus communis 30198.m000869 I 0.840
VIT_17s0000g00330 Vitis vinifera VIT_17s0000g00330 I 0.884
VIT_14s0068g01200 Vitis vinifera VIT_14s0068g01200 I 0.884
VIT_11s0052g00100 Vitis vinifera VIT_11s0052g00100 I 0.840
VIT_01s0244g00130 Vitis vinifera VIT_01s0244g00130 I 0.884
VIT_01s0127g00860 Vitis vinifera VIT_01s0127g00860 I 0.847
TRIUR3_17003 Triticum urartu TRIUR3_17003 I 0.884
TRIUR3_16046 Triticum urartu TRIUR3_16046 I 0.890
Traes_7DL_2A7EF919F Triticum aestivum Traes_7DL_2A7EF919F I 0.884
Traes_7BL_BF5300D88 Triticum aestivum Traes_7BL_BF5300D88 I 0.884
Traes_7AL_ACAC47D88 Triticum aestivum Traes_7AL_ACAC47D88 I 0.884
Traes_6AS_4C2F64614 Triticum aestivum Traes_6AS_4C2F64614 I 0.840
Traes_4DS_7B0E8D459 Triticum aestivum Traes_4DS_7B0E8D459 I 0.890
Ca_01394 Cicer arietinum Ca_01394 I 0.884
Ca_05416 Cicer arietinum Ca_05416 I 0.877
30147.m014419 Ricinus communis 30147.m014419 I 0.884
30131.m006993 Ricinus communis 30131.m006993 I 0.849
Pm024587 Prunus mume Pm024587 I 0.884
Pm016093 Prunus mume Pm016093 I 0.884
Pm008898 Prunus mume Pm008898 I 0.840
Cla023112 Citrullus lanatus Cla023112 I 0.860
Cla016068 Citrullus lanatus Cla016068 I 0.840
Cla003283 Citrullus lanatus Cla003283 I 0.884
Cla002682 Citrullus lanatus Cla002682 I 0.884
Ca_23892 Cicer arietinum Ca_23892 I 0.873
Ca_23694 Cicer arietinum Ca_23694 I 0.877
Ca_23693 Cicer arietinum Ca_23693 I 0.877
TRAES3BF001100060CFD_g Triticum aestivum TRAES3BF001100060CFD_g I 0.884
Bostr.18351s0148 Boechera stricta Bostr.18351s0148 I 0.847
PDK_20s1347451g001 Phoenix dactylifera PDK_20s1347451g001 I 0.860
SapurV1A.0140s0210 Salix purpurea SapurV1A.0140s0210 I 0.840
SapurV1A.0001s2820 Salix purpurea SapurV1A.0001s2820 I 0.874
Pavir.Hb00982 Panicum virgatum Pavir.Hb00982 I 0.884
Pavir.Ha01426 Panicum virgatum Pavir.Ha01426 I 0.873
Pavir.Eb03736 Panicum virgatum Pavir.Eb03736 I 0.884
Pavir.Ea03858 Panicum virgatum Pavir.Ea03858 I 0.884
Pavir.Ab00204 Panicum virgatum Pavir.Ab00204 I 0.860
orange1.1g047004m.g Citrus sinensis orange1.1g047004m.g I 0.884
orange1.1g025665m.g Citrus sinensis orange1.1g025665m.g I 0.840
orange1.1g011370m.g Citrus sinensis orange1.1g011370m.g I 0.884
MDP0000662999 Malus domestica MDP0000662999 I 0.884
MDP0000405748 Malus domestica MDP0000405748 I 0.847
SapurV1A.0140s0250 Salix purpurea SapurV1A.0140s0250 I 0.844
SapurV1A.0218s0460 Salix purpurea SapurV1A.0218s0460 I 0.847
LjSGA_106153.1 Lotus japonicus LjSGA_106153.1 I 0.877
LjSGA_024382.1 Lotus japonicus LjSGA_024382.1 I 0.884
chr1.CM1880.50.nc Lotus japonicus chr1.CM1880.50.nc I 0.884
PK06940.1 Cannabis sativa PK06940.1 I 0.884
PK06841.1 Cannabis sativa PK06841.1 I 0.860
Thhalv10022620m.g Eutrema salsugineum Thhalv10022620m.g I 0.877
Thhalv10007566m.g Eutrema salsugineum Thhalv10007566m.g I 0.884
Thhalv10004059m.g Eutrema salsugineum Thhalv10004059m.g I 0.884
SapurV1A.3355s0020 Salix purpurea SapurV1A.3355s0020 I 0.844
SapurV1A.0774s0030 Salix purpurea SapurV1A.0774s0030 I 0.884
SapurV1A.0672s0200 Salix purpurea SapurV1A.0672s0200 I 0.884
SapurV1A.0517s0250 Salix purpurea SapurV1A.0517s0250 I 0.884
MDP0000318229 Malus domestica MDP0000318229 I 0.840
MDP0000304669 Malus domestica MDP0000304669 I 0.884
evm.TU.supercontig_20.95 Carica papaya evm.TU.supercontig_20.95 I 0.847
evm.TU.supercontig_1024.1 Carica papaya evm.TU.supercontig_1024.1 I 0.860
Eucgr.G01938 Eucalyptus grandis Eucgr.G01938 I 0.884
Eucgr.G01783 Eucalyptus grandis Eucgr.G01783 I 0.847
Eucgr.C02208 Eucalyptus grandis Eucgr.C02208 I 0.840
Ciclev10015052m.g Citrus clementina Ciclev10015052m.g I 0.884
Ciclev10009285m.g Citrus clementina Ciclev10009285m.g I 0.840
Carubv10017099m.g Capsella rubella Carubv10017099m.g I 0.884
Carubv10016240m.g Capsella rubella Carubv10016240m.g I 0.877
Carubv10009081m.g Capsella rubella Carubv10009081m.g I 0.884
Cagra.23157s0001 Capsella grandiflora Cagra.23157s0001 I 0.884
Cagra.10862s0002 Capsella grandiflora Cagra.10862s0002 I 0.877
evm.TU.supercontig_70.77 Carica papaya evm.TU.supercontig_70.77 I 0.884
gene06435-v1.0-hybrid Fragaria vesca gene06435-v1.0-hybrid I 0.884
MDP0000247912 Malus domestica MDP0000247912 I 0.884
MDP0000219146 Malus domestica MDP0000219146 I 0.860
MDP0000133262 Malus domestica MDP0000133262 I 0.840
Lus10032542.g Linum usitatissimum Lus10032542.g I 0.914
Lus10006951.g Linum usitatissimum Lus10006951.g I 0.840
Gorai.013G242800 Gossypium raimondii Gorai.013G242800 I 0.840
Gorai.009G002200 Gossypium raimondii Gorai.009G002200 I 0.840
Gorai.007G072600 Gossypium raimondii Gorai.007G072600 I 0.884
Gorai.007G044800 Gossypium raimondii Gorai.007G044800 I 0.884
Gorai.001G275600 Gossypium raimondii Gorai.001G275600 I 0.884
gene23716-v1.0-hybrid Fragaria vesca gene23716-v1.0-hybrid I 0.847
gene17273-v1.0-hybrid Fragaria vesca gene17273-v1.0-hybrid I 0.840
Cagra.0568s0207 Capsella grandiflora Cagra.0568s0207 I 0.884
MLOC_56814 Hordeum vulgare MLOC_56814 I 0.879
GLYMA19G27483 Glycine max GLYMA19G27483 I 0.884
GLYMA17G06610 Glycine max GLYMA17G06610 I 0.860
GLYMA16G26291 Glycine max GLYMA16G26291 I 0.857
GLYMA16G05390 Glycine max GLYMA16G05390 I 0.884
GLYMA15G18070 Glycine max GLYMA15G18070 I 0.840
GLYMA13G00480 Glycine max GLYMA13G00480 I 0.860
GLYMA10G42830 Glycine max GLYMA10G42830 I 0.877
GLYMA09G06770 Glycine max GLYMA09G06770 I 0.840
GLYMA06G17330 Glycine max GLYMA06G17330 I 0.884
GLYMA05G38530 Glycine max GLYMA05G38530 I 0.884
GLYMA04G37750 Glycine max GLYMA04G37750 I 0.884
ICE1 Arabidopsis lyrata fgenesh2_kg.5__441__AT3G26744.2 I 0.884
GLYMA20G24170 Glycine max GLYMA20G24170 I 0.877
GRMZM2G033356 Zea mays GRMZM2G033356 I 0.884
MLOC_52192 Hordeum vulgare MLOC_52192 I 0.860
MLOC_46407 Hordeum vulgare MLOC_46407 I 0.884
LPERR11G11940 Leersia perrieri LPERR11G11940 I 0.884
LPERR01G37160 Leersia perrieri LPERR01G37160 I 0.884
GSMUA_Achr6G08070_001 Musa acuminata GSMUA_Achr6G08070_001 I 0.884
GSMUA_Achr1G07450_001 Musa acuminata GSMUA_Achr1G07450_001 I 0.860
GSMUA_Achr1G07330_001 Musa acuminata GSMUA_Achr1G07330_001 I 0.860
GSMUA_Achr11G09640_001 Musa acuminata GSMUA_Achr11G09640_001 I 0.873
GSMUA_Achr10G18380_001 Musa acuminata GSMUA_Achr10G18380_001 I 0.884
GSMUA_Achr10G12060_001 Musa acuminata GSMUA_Achr10G12060_001 I 0.884
GRMZM2G173534 Zea mays GRMZM2G173534 I 0.884
GRMZM2G172297 Zea mays GRMZM2G172297 I 0.884
AMS Arabidopsis lyrata fgenesh2_kg.3__3272__AT2G16910.1 I 0.847
F775_15875 Aegilops tauschii F775_15875 I 0.890
Bo7g016210 Brassica oleracea Bo7g016210 I 0.877
Bo5g016510 Brassica oleracea Bo5g016510 I 0.884
Bo5g016490 Brassica oleracea Bo5g016490 I 0.852
Bo3g091780 Brassica oleracea Bo3g091780 I 0.877
Bo01390s040 Brassica oleracea Bo01390s040 I 0.852
Bo00285s440 Brassica oleracea Bo00285s440 I 0.884
BGIOSGA035358 Oryza indica BGIOSGA035358 I 0.884
BGIOSGA000206 Oryza indica BGIOSGA000206 I 0.884
SCRM2 Arabidopsis thaliana AT1G12860 I 0.884
AMTR_s00096p00160080 Amborella trichopoda AMTR_s00096p00160080 I 0.839
AMTR_s00019p00254380 Amborella trichopoda AMTR_s00019p00254380 I 0.860
AMTR_s00016p00170610 Amborella trichopoda AMTR_s00016p00170610 I 0.884
Bo7g083870 Brassica oleracea Bo7g083870 I 0.884
Bo8g065080 Brassica oleracea Bo8g065080 I 0.884
F775_14780 Aegilops tauschii F775_14780 I 0.884
BRADI4G17460 Brachypodium distachyon BRADI4G17460 I 0.914
BRADI3G01910 Brachypodium distachyon BRADI3G01910 I 0.860
BRADI2G59497 Brachypodium distachyon BRADI2G59497 I 0.884
Bra034246 Brassica rapa Bra034246 I 0.884
Bra032947 Brassica rapa Bra032947 I 0.884
Bra025226 Brassica rapa Bra025226 I 0.884
Bra019794 Brassica rapa Bra019794 I 0.884
Bra016749 Brassica rapa Bra016749 I 0.884
Bra013041 Brassica rapa Bra013041 I 0.877
Bra002004 Brassica rapa Bra002004 I 0.877
Bo9g008020 Brassica oleracea Bo9g008020 I 0.884
SCRM2 Arabidopsis lyrata Al_scaffold_0001_1326 I 0.858
MLOC_76805 Hordeum vulgare MLOC_76805 I 0.884
TCM_039471 Theobroma cacao TCM_039471 I 0.840
SELMODRAFT_16039 Selaginella moellendorffii SELMODRAFT_16039 I 0.840
SELMODRAFT_16038 Selaginella moellendorffii SELMODRAFT_16038 I 0.840
SELMODRAFT_138758 Selaginella moellendorffii SELMODRAFT_138758 I 0.884
SELMODRAFT_119431 Selaginella moellendorffii SELMODRAFT_119431 I 0.884
Sb05g019530 Sorghum bicolor Sb05g019530 I 0.884
Sb04g001650 Sorghum bicolor Sb04g001650 I 0.860
Sb03g044660 Sorghum bicolor Sb03g044660 I 0.884
PRUPE_ppa018220mg Prunus persica PRUPE_ppa018220mg I 0.884
PRUPE_ppa010972mg Prunus persica PRUPE_ppa010972mg I 0.840
PRUPE_ppa005038mg Prunus persica PRUPE_ppa005038mg I 0.884
PRUPE_ppa002978mg Prunus persica PRUPE_ppa002978mg I 0.858
POPTR_0018s13860 Populus trichocarpa POPTR_0018s13860 I 0.840
SELMODRAFT_430203 Selaginella moellendorffii SELMODRAFT_430203 I 0.840
SELMODRAFT_451590 Selaginella moellendorffii SELMODRAFT_451590 I 0.840
TCM_017336 Theobroma cacao TCM_017336 I 0.884
TCM_014741 Theobroma cacao TCM_014741 I 0.884
Solyc07g018010.2 Solanum lycopersicum Solyc07g018010.2 I 0.840
Solyc06g068870.2 Solanum lycopersicum Solyc06g068870.2 I 0.914
Solyc03g118310.2 Solanum lycopersicum Solyc03g118310.2 I 0.884
Si026212m.g Setaria italica Si026212m.g I 0.884
Si019518m.g Setaria italica Si019518m.g I 0.840
Si006500m.g Setaria italica Si006500m.g I 0.857
Si001874m.g Setaria italica Si001874m.g I 0.884
SELMODRAFT_94010 Selaginella moellendorffii SELMODRAFT_94010 I 0.884
SELMODRAFT_91237 Selaginella moellendorffii SELMODRAFT_91237 I 0.884
SELMODRAFT_75047 Selaginella moellendorffii SELMODRAFT_75047 I 0.884
POPTR_0018s13840 Populus trichocarpa POPTR_0018s13840 I 0.874
POPTR_0018s13830 Populus trichocarpa POPTR_0018s13830 I 0.844
OPUNC01G41620 Oryza punctata OPUNC01G41620 I 0.884
ONIVA12G10770 Oryza nivara ONIVA12G10770 I 0.884
ONIVA01G48650 Oryza nivara ONIVA01G48650 I 0.884
OMERI11G12580 Oryza meridionalis OMERI11G12580 I 0.884
OMERI01G39590 Oryza meridionalis OMERI01G39590 I 0.884
OGLUM11G14700 Oryza glumaepatula OGLUM11G14700 I 0.884
OGLUM01G46870 Oryza glumaepatula OGLUM01G46870 I 0.884
OBART11G15260 Oryza barthii OBART11G15260 I 0.884
OBART01G42600 Oryza barthii OBART01G42600 I 0.884
MTR_7g083900 Medicago truncatula MTR_7g083900 I 0.873
MTR_3g498695 Medicago truncatula MTR_3g498695 I 0.884
MTR_2g038040 Medicago truncatula MTR_2g038040 I 0.840
OPUNC11G12640 Oryza punctata OPUNC11G12640 I 0.884
ORGLA01G0363500 Oryza glaberrima ORGLA01G0363500 I 0.884
POPTR_0015s11650 Populus trichocarpa POPTR_0015s11650 I 0.884
POPTR_0012s10780 Populus trichocarpa POPTR_0012s10780 I 0.884
AMS Populus trichocarpa POPTR_0009s13860 I 0.847
POPTR_0006s07420 Populus trichocarpa POPTR_0006s07420 I 0.857
PGSC0003DMG401028788 Solanum tuberosum PGSC0003DMG401028788 I 0.914
PGSC0003DMG400014246 Solanum tuberosum PGSC0003DMG400014246 I 0.860
PGSC0003DMG400004087 Solanum tuberosum PGSC0003DMG400004087 I 0.840
OS11G0523700 Oryza sativa OS11G0523700 I 0.884
OS01G0928000 Oryza sativa OS01G0928000 I 0.884
ORUFI11G16280 Oryza rufipogon ORUFI11G16280 I 0.884
ORUFI01G46010 Oryza rufipogon ORUFI01G46010 I 0.884
ORGLA11G0129200 Oryza glaberrima ORGLA11G0129200 I 0.884
MTR_1g112680 Medicago truncatula MTR_1g112680 I 0.877