orange1.1g038451m.g (Citrus sinensis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 orange1.1g038451m.g T050606_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
fgenesh1_pg.scaffold_37000071
M01757_2.00
Physcomitrella patens
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8584
0.912 0.941
BIM1
M01710_2.00
Arabidopsis thaliana
NCRCGTGNNN

NNNCACGYGN
PBM
Weirauch et al.(2014)
pTH8114
0.884 0.961
BIM1
M06739_2.00
Arabidopsis thaliana
CACGTGAYNHNNNH

DNNNDNRTCACGTG
Dap-seq
OMalley et al.(2016)
BIM1_col_a
0.884 0.961
BIM1
M06740_2.00
Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN

NNNDNDNDNDDRKCACGTGMBN
Dap-seq
OMalley et al.(2016)
BIM1_colamp_a
0.884 0.961
BIM1
M09787_2.00
Arabidopsis thaliana Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BIM1_01
0.884 0.961
BIM2
M01701_2.00
Arabidopsis thaliana
NNCACGTGNN

NNCACGTGNN
PBM
Weirauch et al.(2014)
pTH8089
0.864 0.804
BIM2
M06727_2.00
Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN

NNNNNNNNNNNVDCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_colamp
0.864 0.804
BIM2
M06728_2.00
Arabidopsis thaliana
CACGTGMBNNNCVYV

BRBGNNNVKCACGTG
Dap-seq
OMalley et al.(2016)
BIM2_col_v3b
0.864 0.804
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g038451m bHLH 220 270

Links

Other bHLH family TFs
Other Citrus sinensis TFs

168 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_02122 Aegilops tauschii F775_02122 I 0.000
F775_07376 Aegilops tauschii F775_07376 I 0.000
F775_23346 Aegilops tauschii F775_23346 N 0.000
AMTR_s00015p00228580 Amborella trichopoda AMTR_s00015p00228580 I 0.000
AMTR_s00015p00229650 Amborella trichopoda AMTR_s00015p00229650 I 0.000
AMTR_s00077p00103880 Amborella trichopoda AMTR_s00077p00103880 I 0.000
Aquca_030_00182 Aquilegia coerulea Aquca_030_00182 I 0.000
WRKY29 Arabidopsis lyrata fgenesh2_kg.7__1947__AT4G23550.1 I 0.000
WRKY29 Arabidopsis thaliana AT4G23550 D 0.000
Bostr.7867s0150 Boechera stricta Bostr.7867s0150 I 0.000
BRADI1G48770 Brachypodium distachyon BRADI1G48770 I 0.000
BRADI4G44342 Brachypodium distachyon BRADI4G44342 N 0.000
BRADI1G63220 Brachypodium distachyon BRADI1G63220 I 0.000
Bo7g088570 Brassica oleracea Bo7g088570 I 0.000
Bo7g109140 Brassica oleracea Bo7g109140 I 0.000
Bo1g035810 Brassica oleracea Bo1g035810 I 0.000
Bo2g137260 Brassica oleracea Bo2g137260 I 0.000
Bo3g035140 Brassica oleracea Bo3g035140 I 0.000
Bo3g165850 Brassica oleracea Bo3g165850 I 0.000
Bo7g108870 Brassica oleracea Bo7g108870 I 0.000
Bra000203 Brassica rapa Bra000203 I 0.000
Bra020814 Brassica rapa Bra020814 I 0.000
Bra019297 Brassica rapa Bra019297 I 0.000
Bra013732 Brassica rapa Bra013732 I 0.000
Bra013708 Brassica rapa Bra013708 I 0.000
Cagra.1226s0044 Capsella grandiflora Cagra.1226s0044 I 0.000
Cagra.1226s0001 Capsella grandiflora Cagra.1226s0001 I 0.000
Carubv10006884m.g Capsella rubella Carubv10006884m.g I 0.000
Carubv10005155m.g Capsella rubella Carubv10005155m.g I 0.000
evm.TU.supercontig_3.53 Carica papaya evm.TU.supercontig_3.53 I 0.000
Ca_03952 Cicer arietinum Ca_03952 I 0.000
Cla011097 Citrullus lanatus Cla011097 I 0.000
Cla019945 Citrullus lanatus Cla019945 I 0.000
Cucsa.212870 Cucumis sativus Cucsa.212870 I 0.000
Cucsa.107310 Cucumis sativus Cucsa.107310 I 0.000
Cucsa.143830 Cucumis sativus Cucsa.143830 I 0.000
Eucgr.E00098 Eucalyptus grandis Eucgr.E00098 I 0.000
Eucgr.D02359 Eucalyptus grandis Eucgr.D02359 I 0.000
Eucgr.D02324 Eucalyptus grandis Eucgr.D02324 I 0.000
Thhalv10025799m.g Eutrema salsugineum Thhalv10025799m.g I 0.000
gene19219-v1.0-hybrid Fragaria vesca gene19219-v1.0-hybrid I 0.000
GLYMA01G43420 Glycine max GLYMA01G43420 I 0.000
GLYMA04G41701 Glycine max GLYMA04G41701 I 0.000
GLYMA05G36970 Glycine max GLYMA05G36970 I 0.000
GLYMA06G13090 Glycine max GLYMA06G13090 I 0.000
GLYMA16G03570 Glycine max GLYMA16G03570 I 0.000
GLYMA08G02580 Glycine max GLYMA08G02580 I 0.000
Gorai.013G090200 Gossypium raimondii Gorai.013G090200 I 0.000
Gorai.006G013300 Gossypium raimondii Gorai.006G013300 I 0.000
Gorai.009G421200 Gossypium raimondii Gorai.009G421200 I 0.000
Gorai.012G014000 Gossypium raimondii Gorai.012G014000 I 0.000
Gorai.005G003900 Gossypium raimondii Gorai.005G003900 I 0.000
MLOC_78461 Hordeum vulgare MLOC_78461 I 0.000
MLOC_68369 Hordeum vulgare MLOC_68369 N 0.000
LPERR09G04330 Leersia perrieri LPERR09G04330 I 0.000
LPERR11G00980 Leersia perrieri LPERR11G00980 N 0.000
LPERR12G01100 Leersia perrieri LPERR12G01100 I 0.000
LPERR07G11260 Leersia perrieri LPERR07G11260 I 0.000
Lus10001902.g Linum usitatissimum Lus10001902.g I 0.000
LjSGA_074792.1 Lotus japonicus LjSGA_074792.1 I 0.000
LjSGA_058050.1 Lotus japonicus LjSGA_058050.1 I 0.000
chr4.CM0025.230.nd Lotus japonicus chr4.CM0025.230.nd I 0.000
LjSGA_021425.1 Lotus japonicus LjSGA_021425.1 I 0.000
MTR_8g028565 Medicago truncatula MTR_8g028565 I 0.000
MTR_8g098945 Medicago truncatula MTR_8g098945 I 0.000
mgf020540m Mimulus guttatus mgf020540m I 0.000
mgf008735m Mimulus guttatus mgf008735m I 0.000
GSMUA_Achr5G07490_001 Musa acuminata GSMUA_Achr5G07490_001 I 0.000
GSMUA_Achr5G08580_001 Musa acuminata GSMUA_Achr5G08580_001 I 0.000
GSMUA_Achr6G05710_001 Musa acuminata GSMUA_Achr6G05710_001 I 0.000
GSMUA_Achr7G14140_001 Musa acuminata GSMUA_Achr7G14140_001 I 0.000
GSMUA_Achr7G22020_001 Musa acuminata GSMUA_Achr7G22020_001 I 0.000
GSMUA_Achr8G25110_001 Musa acuminata GSMUA_Achr8G25110_001 I 0.000
OBART12G00860 Oryza barthii OBART12G00860 I 0.000
OBART11G01120 Oryza barthii OBART11G01120 I 0.000
OBART09G06020 Oryza barthii OBART09G06020 I 0.000
OBART05G20330 Oryza barthii OBART05G20330 I 0.000
OBART03G16400 Oryza barthii OBART03G16400 I 0.000
OB11G27340 Oryza brachyantha OB11G27340 I 0.000
OB05G27850 Oryza brachyantha OB05G27850 I 0.000
OB12G11040 Oryza brachyantha OB12G11040 I 0.000
OB11G10770 Oryza brachyantha OB11G10770 N 0.000
ORGLA05G0177400 Oryza glaberrima ORGLA05G0177400 I 0.000
ORGLA08G0116200 Oryza glaberrima ORGLA08G0116200 I 0.000
ORGLA11G0202100 Oryza glaberrima ORGLA11G0202100 I 0.000
ORGLA12G0007700 Oryza glaberrima ORGLA12G0007700 I 0.000
OGLUM03G16780 Oryza glumaepatula OGLUM03G16780 I 0.000
OGLUM09G06630 Oryza glumaepatula OGLUM09G06630 I 0.000
OGLUM05G21440 Oryza glumaepatula OGLUM05G21440 I 0.000
OGLUM05G21510 Oryza glumaepatula OGLUM05G21510 I 0.000
OGLUM07G10380 Oryza glumaepatula OGLUM07G10380 I 0.000
OGLUM12G01420 Oryza glumaepatula OGLUM12G01420 N 0.000
OGLUM11G00880 Oryza glumaepatula OGLUM11G00880 I 0.000
BGIOSGA036755 Oryza indica BGIOSGA036755 I 0.000
BGIOSGA040489 Oryza indica BGIOSGA040489 I 0.000
BGIOSGA012571 Oryza indica BGIOSGA012571 I 0.000
BGIOSGA034611 Oryza indica BGIOSGA034611 I 0.000
OLONG_024544 Oryza longistaminata OLONG_024544 I 0.000
OMERI08G11390 Oryza meridionalis OMERI08G11390 I 0.000
OMERI09G04750 Oryza meridionalis OMERI09G04750 I 0.000
OMERI11G01540 Oryza meridionalis OMERI11G01540 I 0.000
OMERI11G01580 Oryza meridionalis OMERI11G01580 I 0.000
OMERI03G14670 Oryza meridionalis OMERI03G14670 I 0.000
ONIVA03G17390 Oryza nivara ONIVA03G17390 I 0.000
ONIVA08G13920 Oryza nivara ONIVA08G13920 I 0.000
ONIVA11G01070 Oryza nivara ONIVA11G01070 N 0.000
OPUNC12G01000 Oryza punctata OPUNC12G01000 N 0.000
OPUNC05G18000 Oryza punctata OPUNC05G18000 I 0.000
OPUNC11G00990 Oryza punctata OPUNC11G00990 N 0.000
OPUNC05G18030 Oryza punctata OPUNC05G18030 I 0.000
ORUFI03G16960 Oryza rufipogon ORUFI03G16960 I 0.000
ORUFI08G15010 Oryza rufipogon ORUFI08G15010 I 0.000
ORUFI12G01180 Oryza rufipogon ORUFI12G01180 N 0.000
OS08G0386200 Oryza sativa OS08G0386200 I 0.000
OS03G0335200 Oryza sativa OS03G0335200 I 0.000
Pavir.J12092 Panicum virgatum Pavir.J12092 I 0.000
Pavir.J05812 Panicum virgatum Pavir.J05812 I 0.000
Pavir.Ib01568 Panicum virgatum Pavir.Ib01568 I 0.000
Pavir.Db02095 Panicum virgatum Pavir.Db02095 I 0.000
Pavir.J20374 Panicum virgatum Pavir.J20374 N 0.000
Pavir.Ca00085 Panicum virgatum Pavir.Ca00085 N 0.000
PDK_20s1519811g001 Phoenix dactylifera PDK_20s1519811g001 I 0.000
PDK_20s1314561g002 Phoenix dactylifera PDK_20s1314561g002 I 0.000
PDK_20s1440981g001 Phoenix dactylifera PDK_20s1440981g001 I 0.000
POPTR_0019s08730 Populus trichocarpa POPTR_0019s08730 I 0.000
Pm018401 Prunus mume Pm018401 I 0.000
PRUPE_ppa007708mg Prunus persica PRUPE_ppa007708mg I 0.000
SELMODRAFT_29703 Selaginella moellendorffii SELMODRAFT_29703 I 0.000
SELMODRAFT_29702 Selaginella moellendorffii SELMODRAFT_29702 I 0.000
Si002401m.g Setaria italica Si002401m.g I 0.000
Si010813m.g Setaria italica Si010813m.g N 0.000
Si028202m.g Setaria italica Si028202m.g I 0.000
Si036565m.g Setaria italica Si036565m.g I 0.000
Si008812m.g Setaria italica Si008812m.g I 0.000
Solyc01g095630.2 Solanum lycopersicum Solyc01g095630.2 I 0.000
Solyc10g009550.2 Solanum lycopersicum Solyc10g009550.2 I 0.000
Solyc08g082110.2 Solanum lycopersicum Solyc08g082110.2 I 0.000
PGSC0003DMG400012160 Solanum tuberosum PGSC0003DMG400012160 I 0.000
PGSC0003DMG400000211 Solanum tuberosum PGSC0003DMG400000211 I 0.000
Sb02g011050 Sorghum bicolor Sb02g011050 I 0.000
Sb01g036180 Sorghum bicolor Sb01g036180 I 0.000
Sb05g001220 Sorghum bicolor Sb05g001220 N 0.000
Sb08g002520 Sorghum bicolor Sb08g002520 I 0.000
Sb10g004000 Sorghum bicolor Sb10g004000 I 0.000
TCM_005261 Theobroma cacao TCM_005261 I 0.000
TCM_016426 Theobroma cacao TCM_016426 I 0.000
TCM_011624 Theobroma cacao TCM_011624 I 0.000
Traes_5DL_09F1F8F79 Triticum aestivum Traes_5DL_09F1F8F79 N 0.000
Traes_5BL_175E7FC38 Triticum aestivum Traes_5BL_175E7FC38 N 0.000
Traes_4AS_0DA136E0E Triticum aestivum Traes_4AS_0DA136E0E I 0.000
TRIUR3_24639 Triticum urartu TRIUR3_24639 N 0.000
WRKY55 Vitis vinifera VIT_13s0067g03130 I 0.000
VIT_16s0050g02510 Vitis vinifera VIT_16s0050g02510 I 0.000
VIT_02s0025g01280 Vitis vinifera VIT_02s0025g01280 I 0.000
GRMZM2G324999 Zea mays GRMZM2G324999 I 0.000
GRMZM2G029292 Zea mays GRMZM2G029292 I 0.000
GRMZM2G139815 Zea mays GRMZM2G139815 I 0.000
GRMZM2G005207 Zea mays GRMZM2G005207 I 0.000