orange1.1g043072m.g (Citrus sinensis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 orange1.1g043072m.g T050623_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g043072m bHLH 172 217

Links

Other bHLH family TFs
Other Citrus sinensis TFs

275 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
F775_04427 Aegilops tauschii F775_04427 N 0.879
F775_52433 Aegilops tauschii F775_52433 N 0.879
AMTR_s00071p00111940 Amborella trichopoda AMTR_s00071p00111940 N 0.859
AMTR_s00008p00265010 Amborella trichopoda AMTR_s00008p00265010 N 0.879
Aquca_001_00189 Aquilegia coerulea Aquca_001_00189 N 0.844
Aquca_007_00665 Aquilegia coerulea Aquca_007_00665 N 0.879
Aquca_010_00306 Aquilegia coerulea Aquca_010_00306 N 0.876
Aquca_022_00317 Aquilegia coerulea Aquca_022_00317 N 0.876
HEC2 Arabidopsis lyrata fgenesh2_kg.5__1376__AT3G50330.1 N 0.879
HEC3 Arabidopsis lyrata fgenesh2_kg.6__929__AT5G09750.1 N 0.879
IND1 Arabidopsis lyrata fgenesh2_kg.6__3690__AT4G00120.1 N 0.876
fgenesh2_kg.3__2354__AT3G21330.1 Arabidopsis lyrata fgenesh2_kg.3__2354__AT3G21330.1 N 0.841
HEC1 Arabidopsis lyrata fgenesh2_kg.8__2711__AT5G67060.1 N 0.879
HEC2 Arabidopsis thaliana AT3G50330 N 0.879
IND Arabidopsis thaliana AT4G00120 N 0.876
HEC3 Arabidopsis thaliana AT5G09750 N 0.879
HEC1 Arabidopsis thaliana AT5G67060 N 0.879
BHLH87 Arabidopsis thaliana AT3G21330 N 0.841
Bostr.14547s0021 Boechera stricta Bostr.14547s0021 N 0.876
Bostr.0568s0128 Boechera stricta Bostr.0568s0128 N 0.879
Bostr.13129s0018 Boechera stricta Bostr.13129s0018 N 0.879
Bostr.19424s0519 Boechera stricta Bostr.19424s0519 N 0.841
Bostr.6864s0212 Boechera stricta Bostr.6864s0212 N 0.879
BRADI3G38250 Brachypodium distachyon BRADI3G38250 N 0.879
BRADI2G41390 Brachypodium distachyon BRADI2G41390 N 0.856
BRADI4G32060 Brachypodium distachyon BRADI4G32060 N 0.879
BRADI3G13300 Brachypodium distachyon BRADI3G13300 N 0.879
Bo5g101160 Brassica oleracea Bo5g101160 N 0.841
Bo3g054830 Brassica oleracea Bo3g054830 N 0.876
Bo7g064100 Brassica oleracea Bo7g064100 N 0.879
Bo2g009510 Brassica oleracea Bo2g009510 N 0.879
Bo1g084640 Brassica oleracea Bo1g084640 N 0.879
Bo9g173860 Brassica oleracea Bo9g173860 N 0.879
Bo3g078540 Brassica oleracea Bo3g078540 N 0.840
Bo8g079710 Brassica oleracea Bo8g079710 N 0.879
Bo9g020420 Brassica oleracea Bo9g020420 N 0.879
Bo2g167880 Brassica oleracea Bo2g167880 N 0.879
Bra012128 Brassica rapa Bra012128 N 0.879
Bra000979 Brassica rapa Bra000979 N 0.876
Bra001826 Brassica rapa Bra001826 N 0.840
Bra028620 Brassica rapa Bra028620 N 0.879
Bra030002 Brassica rapa Bra030002 N 0.879
Bra031275 Brassica rapa Bra031275 N 0.841
Bra036071 Brassica rapa Bra036071 N 0.879
Bra036801 Brassica rapa Bra036801 N 0.879
Bra037128 Brassica rapa Bra037128 N 0.879
PK01043.1 Cannabis sativa PK01043.1 N 0.879
PK21140.1 Cannabis sativa PK21140.1 N 0.844
Cagra.1757s0024 Capsella grandiflora Cagra.1757s0024 N 0.841
Cagra.1261s0004 Capsella grandiflora Cagra.1261s0004 N 0.876
Cagra.1085s0086 Capsella grandiflora Cagra.1085s0086 N 0.879
Cagra.0706s0009 Capsella grandiflora Cagra.0706s0009 N 0.879
Cagra.2428s0003 Capsella grandiflora Cagra.2428s0003 N 0.879
Carubv10003900m.g Capsella rubella Carubv10003900m.g N 0.879
Carubv10013989m.g Capsella rubella Carubv10013989m.g N 0.841
Carubv10019056m.g Capsella rubella Carubv10019056m.g N 0.879
Carubv10027898m.g Capsella rubella Carubv10027898m.g N 0.879
Carubv10003163m.g Capsella rubella Carubv10003163m.g N 0.876
evm.TU.supercontig_49.31 Carica papaya evm.TU.supercontig_49.31 N 0.879
evm.TU.supercontig_131.7 Carica papaya evm.TU.supercontig_131.7 N 0.844
evm.TU.supercontig_55.142 Carica papaya evm.TU.supercontig_55.142 N 0.879
Ca_02767 Cicer arietinum Ca_02767 N 0.844
Ca_09667 Cicer arietinum Ca_09667 N 0.876
Ca_10121 Cicer arietinum Ca_10121 N 0.841
Ca_09282 Cicer arietinum Ca_09282 N 0.879
Ca_01550 Cicer arietinum Ca_01550 N 0.879
Ca_02154 Cicer arietinum Ca_02154 N 0.876
Cla020973 Citrullus lanatus Cla020973 N 0.879
Cla008578 Citrullus lanatus Cla008578 N 0.876
Cla015855 Citrullus lanatus Cla015855 N 0.868
Cla020499 Citrullus lanatus Cla020499 N 0.844
Cla022928 Citrullus lanatus Cla022928 N 0.879
Ciclev10026976m.g Citrus clementina Ciclev10026976m.g N 0.844
Ciclev10026967m.g Citrus clementina Ciclev10026967m.g N 0.914
Ciclev10003815m.g Citrus clementina Ciclev10003815m.g N 0.879
orange1.1g024139m.g Citrus sinensis orange1.1g024139m.g N 0.879
orange1.1g047850m.g Citrus sinensis orange1.1g047850m.g N 0.876
orange1.1g020172m.g Citrus sinensis orange1.1g020172m.g N 0.844
Cucsa.101020 Cucumis sativus Cucsa.101020 N 0.876
Cucsa.352300 Cucumis sativus Cucsa.352300 N 0.879
Cucsa.360770 Cucumis sativus Cucsa.360770 N 0.868
Cucsa.366890 Cucumis sativus Cucsa.366890 N 0.844
Cucsa.396050 Cucumis sativus Cucsa.396050 N 0.879
Eucgr.H02048 Eucalyptus grandis Eucgr.H02048 N 0.879
Eucgr.F03093 Eucalyptus grandis Eucgr.F03093 N 0.844
Eucgr.H01682 Eucalyptus grandis Eucgr.H01682 N 0.879
Eucgr.H04946 Eucalyptus grandis Eucgr.H04946 N 0.876
Eucgr.F00216 Eucalyptus grandis Eucgr.F00216 N 0.879
Thhalv10022273m.g Eutrema salsugineum Thhalv10022273m.g N 0.841
Thhalv10004846m.g Eutrema salsugineum Thhalv10004846m.g N 0.879
Thhalv10015330m.g Eutrema salsugineum Thhalv10015330m.g N 0.879
Thhalv10011068m.g Eutrema salsugineum Thhalv10011068m.g N 0.879
Thhalv10029526m.g Eutrema salsugineum Thhalv10029526m.g N 0.876
gene23830-v1.0-hybrid Fragaria vesca gene23830-v1.0-hybrid N 0.879
gene09115-v1.0-hybrid Fragaria vesca gene09115-v1.0-hybrid N 0.879
gene17881-v1.0-hybrid Fragaria vesca gene17881-v1.0-hybrid N 0.876
gene22897-v1.0-hybrid Fragaria vesca gene22897-v1.0-hybrid N 0.844
GLYMA15G02531 Glycine max GLYMA15G02531 N 0.844
GLYMA08G16570 Glycine max GLYMA08G16570 N 0.876
GLYMA04G04190 Glycine max GLYMA04G04190 N 0.879
GLYMA17G19830 Glycine max GLYMA17G19830 N 0.879
GLYMA13G42900 Glycine max GLYMA13G42900 N 0.844
GLYMA11G05920 Glycine max GLYMA11G05920 N 0.879
GLYMA01G39360 Glycine max GLYMA01G39360 N 0.879
GLYMA08G21130 Glycine max GLYMA08G21130 N 0.841
GLYMA07G01611 Glycine max GLYMA07G01611 N 0.841
GLYMA06G04380 Glycine max GLYMA06G04380 N 0.879
GLYMA05G32410 Glycine max GLYMA05G32410 N 0.876
GLYMA04G39210 Glycine max GLYMA04G39210 N 0.876
GLYMA06G15730 Glycine max GLYMA06G15730 N 0.876
GLYMA05G19920 Glycine max GLYMA05G19920 N 0.879
Gorai.009G212900 Gossypium raimondii Gorai.009G212900 N 0.879
Gorai.010G020500 Gossypium raimondii Gorai.010G020500 N 0.879
Gorai.011G069200 Gossypium raimondii Gorai.011G069200 N 0.844
Gorai.011G116100 Gossypium raimondii Gorai.011G116100 N 0.876
Gorai.007G213700 Gossypium raimondii Gorai.007G213700 N 0.879
Gorai.003G060900 Gossypium raimondii Gorai.003G060900 N 0.844
Gorai.003G025300 Gossypium raimondii Gorai.003G025300 N 0.879
MLOC_16429 Hordeum vulgare MLOC_16429 N 0.879
LPERR01G17090 Leersia perrieri LPERR01G17090 N 0.856
LPERR08G01030 Leersia perrieri LPERR08G01030 N 0.879
LPERR09G09120 Leersia perrieri LPERR09G09120 N 0.879
LPERR08G14680 Leersia perrieri LPERR08G14680 N 0.879
Lus10009745.g Linum usitatissimum Lus10009745.g N 0.844
Lus10042647.g Linum usitatissimum Lus10042647.g N 0.876
Lus10003500.g Linum usitatissimum Lus10003500.g N 0.844
Lus10005710.g Linum usitatissimum Lus10005710.g N 0.876
Lus10012670.g Linum usitatissimum Lus10012670.g N 0.879
Lus10033488.g Linum usitatissimum Lus10033488.g N 0.840
LjSGA_011209.1 Lotus japonicus LjSGA_011209.1 N 0.876
LjT10C23.20.nc Lotus japonicus LjT10C23.20.nc N 0.876
MDP0000145937 Malus domestica MDP0000145937 N 0.844
MDP0000166245 Malus domestica MDP0000166245 N 0.844
MDP0000249405 Malus domestica MDP0000249405 N 0.879
MDP0000420192 Malus domestica MDP0000420192 N 0.876
MDP0000711774 Malus domestica MDP0000711774 N 0.876
MDP0000123893 Malus domestica MDP0000123893 N 0.879
MDP0000123894 Malus domestica MDP0000123894 N 0.879
cassava34914.m1 Manihot esculenta cassava34914.m1 N 0.844
cassava5871.m1 Manihot esculenta cassava5871.m1 N 0.876
cassava8495.m1 Manihot esculenta cassava8495.m1 N 0.879
cassava45275.m1 Manihot esculenta cassava45275.m1 N 0.879
cassava41909.m1 Manihot esculenta cassava41909.m1 N 0.879
cassava15224.m1 Manihot esculenta cassava15224.m1 N 0.876
cassava2779.m1 Manihot esculenta cassava2779.m1 N 0.844
MTR_5g017210 Medicago truncatula MTR_5g017210 N 0.879
MTR_8g093500 Medicago truncatula MTR_8g093500 N 0.876
MTR_3g101810 Medicago truncatula MTR_3g101810 N 0.876
MTR_8g015450 Medicago truncatula MTR_8g015450 N 0.844
MTR_2g100490 Medicago truncatula MTR_2g100490 N 0.844
mgf023933m Mimulus guttatus mgf023933m N 0.844
mgf019142m Mimulus guttatus mgf019142m N 0.876
mg018414m Mimulus guttatus mg018414m N 0.879
GSMUA_Achr8G24970_001 Musa acuminata GSMUA_Achr8G24970_001 N 0.853
GSMUA_Achr9G29130_001 Musa acuminata GSMUA_Achr9G29130_001 N 0.859
GSMUA_Achr8G23350_001 Musa acuminata GSMUA_Achr8G23350_001 N 0.844
GSMUA_Achr9G15380_001 Musa acuminata GSMUA_Achr9G15380_001 N 0.867
GSMUA_Achr6G18580_001 Musa acuminata GSMUA_Achr6G18580_001 N 0.879
GSMUA_Achr5G01290_001 Musa acuminata GSMUA_Achr5G01290_001 N 0.879
GSMUA_Achr10G25590_001 Musa acuminata GSMUA_Achr10G25590_001 N 0.879
GSMUA_Achr7G23410_001 Musa acuminata GSMUA_Achr7G23410_001 N 0.841
OBART01G19850 Oryza barthii OBART01G19850 N 0.856
OB08G10720 Oryza brachyantha OB08G10720 N 0.879
ORGLA08G0237200 Oryza glaberrima ORGLA08G0237200 N 0.879
ORGLA08G0155700 Oryza glaberrima ORGLA08G0155700 N 0.879
ORGLA01G0163600 Oryza glaberrima ORGLA01G0163600 N 0.856
ORGLA09G0096500 Oryza glaberrima ORGLA09G0096500 N 0.879
OGLUM09G13100 Oryza glumaepatula OGLUM09G13100 N 0.879
OGLUM08G18600 Oryza glumaepatula OGLUM08G18600 N 0.879
OGLUM08G00660 Oryza glumaepatula OGLUM08G00660 N 0.879
OGLUM01G23470 Oryza glumaepatula OGLUM01G23470 N 0.856
BGIOSGA027780 Oryza indica BGIOSGA027780 N 0.879
BGIOSGA001389 Oryza indica BGIOSGA001389 N 0.856
BGIOSGA030896 Oryza indica BGIOSGA030896 N 0.879
BGIOSGA026828 Oryza indica BGIOSGA026828 N 0.879
OMERI09G10060 Oryza meridionalis OMERI09G10060 N 0.879
OMERI08G00980 Oryza meridionalis OMERI08G00980 N 0.879
OMERI01G18460 Oryza meridionalis OMERI01G18460 N 0.856
ONIVA08G00590 Oryza nivara ONIVA08G00590 N 0.879
ONIVA01G07440 Oryza nivara ONIVA01G07440 N 0.856
ONIVA03G20840 Oryza nivara ONIVA03G20840 N 0.879
ONIVA08G19790 Oryza nivara ONIVA08G19790 N 0.879
OPUNC09G11020 Oryza punctata OPUNC09G11020 N 0.879
OPUNC08G15570 Oryza punctata OPUNC08G15570 N 0.879
OPUNC08G00600 Oryza punctata OPUNC08G00600 N 0.879
OPUNC01G20250 Oryza punctata OPUNC01G20250 N 0.856
ORUFI08G19930 Oryza rufipogon ORUFI08G19930 N 0.879
ORUFI09G13650 Oryza rufipogon ORUFI09G13650 N 0.879
ORUFI08G00650 Oryza rufipogon ORUFI08G00650 N 0.879
OS01G0566800 Oryza sativa OS01G0566800 N 0.856
OS08G0108500 Oryza sativa OS08G0108500 N 0.879
OS09G0455300 Oryza sativa OS09G0455300 N 0.879
Pavir.J20328 Panicum virgatum Pavir.J20328 N 0.879
Pavir.J39499 Panicum virgatum Pavir.J39499 N 0.879
Pavir.J21912 Panicum virgatum Pavir.J21912 N 0.879
Pavir.J21430 Panicum virgatum Pavir.J21430 N 0.842
Pavir.Eb02901 Panicum virgatum Pavir.Eb02901 N 0.855
Pavir.Fa02152 Panicum virgatum Pavir.Fa02152 N 0.879
Pavir.Fa00680 Panicum virgatum Pavir.Fa00680 N 0.879
Pavir.Eb02113 Panicum virgatum Pavir.Eb02113 N 0.856
Pavir.Ba02034 Panicum virgatum Pavir.Ba02034 N 0.879
Pavir.Ca00715 Panicum virgatum Pavir.Ca00715 N 0.842
Pavir.Ea01618 Panicum virgatum Pavir.Ea01618 N 0.856
gw1.67.189.1 Physcomitrella patens gw1.67.189.1 N 0.859
estExt_fgenesh1_pg.C_550008 Physcomitrella patens estExt_fgenesh1_pg.C_550008 N 0.859
fgenesh1_pg.scaffold_273000011 Physcomitrella patens fgenesh1_pg.scaffold_273000011 N 0.859
POPTR_0007s10950 Populus trichocarpa POPTR_0007s10950 N 0.867
XM_002310473.1 Populus trichocarpa POPTR_0007s03950 N 0.876
POPTR_0005s18210 Populus trichocarpa POPTR_0005s18210 N 0.879
POPTR_0005s06220 Populus trichocarpa POPTR_0005s06220 N 0.876
POPTR_0002s12660 Populus trichocarpa POPTR_0002s12660 N 0.879
POPTR_0014s02720 Populus trichocarpa POPTR_0014s02720 N 0.879
Pm030884 Prunus mume Pm030884 N 0.844
Pm026380 Prunus mume Pm026380 N 0.876
Pm001707 Prunus mume Pm001707 N 0.876
Pm005293 Prunus mume Pm005293 N 0.879
PRUPE_ppa015446mg Prunus persica PRUPE_ppa015446mg N 0.844
PRUPE_ppa022938mg Prunus persica PRUPE_ppa022938mg N 0.876
PRUPE_ppa021410mg Prunus persica PRUPE_ppa021410mg N 0.876
PRUPE_ppa021226mg Prunus persica PRUPE_ppa021226mg N 0.879
30146.m003443 Ricinus communis 30146.m003443 N 0.844
30115.m001220 Ricinus communis 30115.m001220 N 0.879
30136.m001043 Ricinus communis 30136.m001043 N 0.876
30170.m013861 Ricinus communis 30170.m013861 N 0.879
SapurV1A.0167s0080 Salix purpurea SapurV1A.0167s0080 N 0.879
SapurV1A.0352s0020 Salix purpurea SapurV1A.0352s0020 N 0.876
SapurV1A.2123s0040 Salix purpurea SapurV1A.2123s0040 N 0.879
SapurV1A.0423s0010 Salix purpurea SapurV1A.0423s0010 N 0.879
SapurV1A.0550s0030 Salix purpurea SapurV1A.0550s0030 N 0.876
SapurV1A.0623s0130 Salix purpurea SapurV1A.0623s0130 N 0.863
SELMODRAFT_405220 Selaginella moellendorffii SELMODRAFT_405220 N 0.856
SELMODRAFT_415047 Selaginella moellendorffii SELMODRAFT_415047 N 0.856
Si030966m.g Setaria italica Si030966m.g N 0.879
Si015197m.g Setaria italica Si015197m.g N 0.879
Si015349m.g Setaria italica Si015349m.g N 0.879
Si003753m.g Setaria italica Si003753m.g N 0.856
Si001743m.g Setaria italica Si001743m.g N 0.855
Solyc12g088790.1 Solanum lycopersicum Solyc12g088790.1 N 0.876
Solyc11g005780.1 Solanum lycopersicum Solyc11g005780.1 N 0.876
Solyc04g078790.2 Solanum lycopersicum Solyc04g078790.2 N 0.879
Solyc03g121240.1 Solanum lycopersicum Solyc03g121240.1 N 0.844
Solyc02g090950.1 Solanum lycopersicum Solyc02g090950.1 N 0.868
PGSC0003DMG400007964 Solanum tuberosum PGSC0003DMG400007964 N 0.879
PGSC0003DMG400018986 Solanum tuberosum PGSC0003DMG400018986 N 0.844
PGSC0003DMG400004039 Solanum tuberosum PGSC0003DMG400004039 N 0.868
PGSC0003DMG400028657 Solanum tuberosum PGSC0003DMG400028657 N 0.876
Sb03g025570 Sorghum bicolor Sb03g025570 N 0.856
Sb07g000910 Sorghum bicolor Sb07g000910 N 0.879
Sb09g027030 Sorghum bicolor Sb09g027030 N 0.842
Sb02g026530 Sorghum bicolor Sb02g026530 N 0.879
Sb07g000900 Sorghum bicolor Sb07g000900 N 0.879
Sb03g032520 Sorghum bicolor Sb03g032520 N 0.855
Sb07g022920 Sorghum bicolor Sb07g022920 N 0.879
TCM_000632 Theobroma cacao TCM_000632 N 0.879
TCM_001435 Theobroma cacao TCM_001435 N 0.876
TCM_028961 Theobroma cacao TCM_028961 N 0.844
TCM_033818 Theobroma cacao TCM_033818 N 0.879
Traes_7DL_F43F7A9A3 Triticum aestivum Traes_7DL_F43F7A9A3 N 0.879
Traes_6AS_C1A37E015 Triticum aestivum Traes_6AS_C1A37E015 N 0.879
Traes_5BL_DDC2491F7 Triticum aestivum Traes_5BL_DDC2491F7 N 0.879
TRAES3BF276900020CFD_g Triticum aestivum TRAES3BF276900020CFD_g N 0.856
TRIUR3_28638 Triticum urartu TRIUR3_28638 N 0.856
TRIUR3_19098 Triticum urartu TRIUR3_19098 N 0.879
HEC3 Vitis vinifera VIT_04s0044g01040 N 0.876
VIT_09s0002g02700 Vitis vinifera VIT_09s0002g02700 N 0.844
VIT_07s0031g00550 Vitis vinifera VIT_07s0031g00550 N 0.879
VIT_18s0001g10400 Vitis vinifera VIT_18s0001g10400 N 0.876
GRMZM5G817854 Zea mays GRMZM5G817854 N 0.867
GRMZM5G812883 Zea mays GRMZM5G812883 N 0.867
GRMZM2G111666 Zea mays GRMZM2G111666 N 0.855
GRMZM2G134735 Zea mays GRMZM2G134735 N 0.879
GRMZM2G354618 Zea mays GRMZM2G354618 N 0.867
GRMZM2G414252 Zea mays GRMZM2G414252 N 0.879
GRMZM2G471635 Zea mays GRMZM2G471635 N 0.879
GRMZM5G818776 Zea mays GRMZM5G818776 N 0.867