Pavir.Ab03017 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.Ab03017 T050669_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
fgenesh1_pg.scaffold_37000071
M01757_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8584 		0.876 0.804
BIM1
M01710_2.00 		Arabidopsis thaliana
NCRCGTGNNN
NNNCACGYGN		 PBM
Weirauch et al.(2014)
pTH8114 		0.846 0.804
BIM1
M06739_2.00 		Arabidopsis thaliana
CACGTGAYNHNNNH
DNNNDNRTCACGTG		 Dap-seq
OMalley et al.(2016)
BIM1_col_a 		0.846 0.804
BIM1
M06740_2.00 		Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN
NNNDNDNDNDDRKCACGTGMBN		 Dap-seq
OMalley et al.(2016)
BIM1_colamp_a 		0.846 0.804
BIM1
M09787_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BIM1_01 		0.846 0.804
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ab03017.1.p bHLH 49 99

Links

Other bHLH family TFs
Other Panicum virgatum TFs

125 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OB02G38020 Oryza brachyantha OB02G38020 I 0.914
GRMZM2G317450 Zea mays GRMZM2G317450 I 0.914
ORGLA02G0264700 Oryza glaberrima ORGLA02G0264700 I 0.914
Sb04g029270 Sorghum bicolor Sb04g029270 I 0.914
Si016505m.g Setaria italica Si016505m.g I 0.914
Pavir.Aa00700 Panicum virgatum Pavir.Aa00700 I 0.914
OS02G0726700 Oryza sativa OS02G0726700 I 0.914
BGIOSGA005697 Oryza indica BGIOSGA005697 I 0.914
GSMUA_Achr3G10640_001 Musa acuminata GSMUA_Achr3G10640_001 I 0.900
MLOC_62335 Hordeum vulgare MLOC_62335 I 0.884
BRADI3G56340 Brachypodium distachyon BRADI3G56340 I 0.884
Traes_6DL_D38F3257B Triticum aestivum Traes_6DL_D38F3257B I 0.884
Traes_6BL_DA93728B3 Triticum aestivum Traes_6BL_DA93728B3 I 0.884
gene26139-v1.0-hybrid Fragaria vesca gene26139-v1.0-hybrid I 0.880
OLONG_003583 Oryza longistaminata OLONG_003583 I 0.878
SELMODRAFT_451477 Selaginella moellendorffii SELMODRAFT_451477 I 0.878
SELMODRAFT_451475 Selaginella moellendorffii SELMODRAFT_451475 I 0.878
ONIVA08G20800 Oryza nivara ONIVA08G20800 I 0.878
OB08G25940 Oryza brachyantha OB08G25940 I 0.878
BGIOSGA028888 Oryza indica BGIOSGA028888 I 0.878
OS08G0490000 Oryza sativa OS08G0490000 I 0.878
ORGLA08G0164200 Oryza glaberrima ORGLA08G0164200 I 0.878
ORUFI08G21030 Oryza rufipogon ORUFI08G21030 I 0.878
OPUNC08G16820 Oryza punctata OPUNC08G16820 I 0.878
OGLUM08G19830 Oryza glumaepatula OGLUM08G19830 I 0.878
BRADI3G38970 Brachypodium distachyon BRADI3G38970 I 0.878
Ciclev10020248m.g Citrus clementina Ciclev10020248m.g I 0.876
gw1.90.123.1 Physcomitrella patens gw1.90.123.1 I 0.876
SapurV1A.0178s0150 Salix purpurea SapurV1A.0178s0150 I 0.876
BIM1 Vitis vinifera VIT_17s0000g04790 I 0.876
GSMUA_Achr4G19530_001 Musa acuminata GSMUA_Achr4G19530_001 I 0.876
TCM_014392 Theobroma cacao TCM_014392 I 0.876
Solyc06g069370.2 Solanum lycopersicum Solyc06g069370.2 I 0.876
AMTR_s00006p00250310 Amborella trichopoda AMTR_s00006p00250310 I 0.876
orange1.1g038451m.g Citrus sinensis orange1.1g038451m.g I 0.876
evm.TU.supercontig_3.225 Carica papaya evm.TU.supercontig_3.225 I 0.876
PRUPE_ppa003436mg Prunus persica PRUPE_ppa003436mg I 0.876
POPTR_0015s03550 Populus trichocarpa POPTR_0015s03550 I 0.876
GLYMA05G07490 Glycine max GLYMA05G07490 I 0.876
fgenesh1_pg.scaffold_37000071 Physcomitrella patens fgenesh1_pg.scaffold_37000071 D 0.876
MTR_4g110040 Medicago truncatula MTR_4g110040 I 0.876
cassava29318.valid.m1 Manihot esculenta cassava29318.valid.m1 I 0.876
cassava43379.valid.m1 Manihot esculenta cassava43379.valid.m1 I 0.876
estExt_fgenesh1_pg.C_2110039 Physcomitrella patens estExt_fgenesh1_pg.C_2110039 I 0.876
SapurV1A.0868s0010 Salix purpurea SapurV1A.0868s0010 I 0.876
GSMUA_Achr9G19110_001 Musa acuminata GSMUA_Achr9G19110_001 I 0.876
GSMUA_Achr2G05450_001 Musa acuminata GSMUA_Achr2G05450_001 I 0.876
Cucsa.198520 Cucumis sativus Cucsa.198520 I 0.865
GLYMA17G08980 Glycine max GLYMA17G08980 I 0.865
GSMUA_Achr9G28050_001 Musa acuminata GSMUA_Achr9G28050_001 I 0.863
Cla018818 Citrullus lanatus Cla018818 I 0.858
orange1.1g019960m.g Citrus sinensis orange1.1g019960m.g I 0.856
Ciclev10032020m.g Citrus clementina Ciclev10032020m.g I 0.856
MDP0000261293 Malus domestica MDP0000261293 I 0.856
PK01364.1 Cannabis sativa PK01364.1 I 0.856
cassava43370.valid.m1 Manihot esculenta cassava43370.valid.m1 I 0.856
BIM2 Vitis vinifera VIT_01s0010g00540 I 0.856
30138.m003899 Ricinus communis 30138.m003899 I 0.856
Cla022382 Citrullus lanatus Cla022382 I 0.856
cassava29314.valid.m1 Manihot esculenta cassava29314.valid.m1 I 0.856
Cucsa.328060 Cucumis sativus Cucsa.328060 I 0.856
Solyc05g011810.2 Solanum lycopersicum Solyc05g011810.2 I 0.856
gene04534-v1.0-hybrid Fragaria vesca gene04534-v1.0-hybrid I 0.856
mgf013208m Mimulus guttatus mgf013208m I 0.856
Solyc04g005280.2 Solanum lycopersicum Solyc04g005280.2 I 0.856
PGSC0003DMG400001919 Solanum tuberosum PGSC0003DMG400001919 I 0.856
PGSC0003DMG400019654 Solanum tuberosum PGSC0003DMG400019654 I 0.856
GLYMA02G13670 Glycine max GLYMA02G13670 I 0.856
POPTR_0008s11120 Populus trichocarpa POPTR_0008s11120 I 0.856
SapurV1A.0084s0570 Salix purpurea SapurV1A.0084s0570 I 0.856
POPTR_0010s14740 Populus trichocarpa POPTR_0010s14740 I 0.856
SapurV1A.0060s0510 Salix purpurea SapurV1A.0060s0510 I 0.856
PRUPE_ppa008387mg Prunus persica PRUPE_ppa008387mg I 0.856
LPERR08G15680 Leersia perrieri LPERR08G15680 I 0.854
Lus10013502.g Linum usitatissimum Lus10013502.g I 0.852
BGIOSGA030958 Oryza indica BGIOSGA030958 I 0.852
GRMZM2G089501 Zea mays GRMZM2G089501 I 0.852
OBART09G13850 Oryza barthii OBART09G13850 I 0.852
LPERR09G10080 Leersia perrieri LPERR09G10080 I 0.852
Lus10007974.g Linum usitatissimum Lus10007974.g I 0.852
Pavir.J04606 Panicum virgatum Pavir.J04606 I 0.852
BRADI4G32967 Brachypodium distachyon BRADI4G32967 I 0.852
OGLUM09G14430 Oryza glumaepatula OGLUM09G14430 I 0.852
F775_23096 Aegilops tauschii F775_23096 I 0.852
GRMZM2G009478 Zea mays GRMZM2G009478 I 0.852
OLONG_020060 Oryza longistaminata OLONG_020060 I 0.852
Traes_5BL_AAC9C7238 Triticum aestivum Traes_5BL_AAC9C7238 I 0.852
Traes_5DL_E96693018 Triticum aestivum Traes_5DL_E96693018 I 0.852
Traes_5AL_0D4BDDDCD Triticum aestivum Traes_5AL_0D4BDDDCD I 0.852
OS09G0475400 Oryza sativa OS09G0475400 I 0.852
Si029604m.g Setaria italica Si029604m.g I 0.852
30138.m003913 Ricinus communis 30138.m003913 I 0.852
ORUFI09G14830 Oryza rufipogon ORUFI09G14830 I 0.852
OMERI09G10560 Oryza meridionalis OMERI09G10560 I 0.852
Sb02g027460 Sorghum bicolor Sb02g027460 I 0.852
ORGLA09G0105800 Oryza glaberrima ORGLA09G0105800 I 0.852
ONIVA09G14370 Oryza nivara ONIVA09G14370 I 0.852
ORGLA06G0286200 Oryza glaberrima ORGLA06G0286200 I 0.852
OPUNC09G12310 Oryza punctata OPUNC09G12310 I 0.852
Pavir.Fb01833 Panicum virgatum Pavir.Fb01833 I 0.848
Pavir.J38910 Panicum virgatum Pavir.J38910 I 0.848
Sb07g028860 Sorghum bicolor Sb07g028860 I 0.848
Si013622m.g Setaria italica Si013622m.g I 0.848
Bo9g174770 Brassica oleracea Bo9g174770 I 0.846
Bra005969 Brassica rapa Bra005969 I 0.846
Bra009322 Brassica rapa Bra009322 I 0.846
Bo5g020460 Brassica oleracea Bo5g020460 I 0.846
Bo3g004690 Brassica oleracea Bo3g004690 I 0.846
PK10562.1 Cannabis sativa PK10562.1 I 0.846
BIM1 Arabidopsis thaliana AT5G08130 D 0.846
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I 0.846
Bo2g161110 Brassica oleracea Bo2g161110 I 0.846
Bra029354 Brassica rapa Bra029354 I 0.846
BIM1 Arabidopsis lyrata scaffold_600819.1 I 0.846
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I 0.846
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I 0.846
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I 0.846
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I 0.846
mgf005849m Mimulus guttatus mgf005849m I 0.846
Carubv10000655m.g Capsella rubella Carubv10000655m.g I 0.846
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I 0.846
Cucsa.113490 Cucumis sativus Cucsa.113490 I 0.846
mgf001137m Mimulus guttatus mgf001137m I 0.846
GLYMA01G09010 Glycine max GLYMA01G09010 I 0.844
evm.TU.supercontig_289.6 Carica papaya evm.TU.supercontig_289.6 I 0.843