CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ba01985
(
Panicum virgatum
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Pavir.Ba01985
T050686_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ba01985.1.p
bHLH
33
81
SRSHSEAERKRRQRINAHLATLRTLVPAASRMDKAALLGEVVRHVRELR
Pavir.Ba01985.2.p
bHLH
33
81
SRSHSEAERKRRQRINAHLATLRTLVPAASRMDKAALLGEVVRHVRELR
Links
Other
bHLH
family TFs
Other
Panicum virgatum
TFs
40 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Pavir.J16121
Panicum virgatum
Pavir.J16121
N
0.914
Sb02g026920
Sorghum bicolor
Sb02g026920
N
0.912
GRMZM2G113257
Zea mays
GRMZM2G113257
N
0.912
GRMZM2G145146
Zea mays
GRMZM2G145146
N
0.912
Si033077m.g
Setaria italica
Si033077m.g
N
0.912
BGIOSGA028855
Oryza indica
BGIOSGA028855
N
0.884
OPUNC08G16020
Oryza punctata
OPUNC08G16020
N
0.884
ONIVA08G20180
Oryza nivara
ONIVA08G20180
N
0.884
ORGLA08G0157100
Oryza glaberrima
ORGLA08G0157100
N
0.884
ORUFI08G20260
Oryza rufipogon
ORUFI08G20260
N
0.884
Si014356m.g
Setaria italica
Si014356m.g
N
0.884
OMERI09G10230
Oryza meridionalis
OMERI09G10230
N
0.884
OS08G0477900
Oryza sativa
OS08G0477900
N
0.884
Sb07g023280
Sorghum bicolor
Sb07g023280
N
0.884
OGLUM08G19000
Oryza glumaepatula
OGLUM08G19000
N
0.884
OB08G25230
Oryza brachyantha
OB08G25230
N
0.884
GRMZM2G082630
Zea mays
GRMZM2G082630
N
0.884
LPERR08G15030
Leersia perrieri
LPERR08G15030
N
0.884
GSMUA_Achr9G15140_001
Musa acuminata
GSMUA_Achr9G15140_001
N
0.879
GSMUA_Achr3G06780_001
Musa acuminata
GSMUA_Achr3G06780_001
N
0.879
BRADI4G32470
Brachypodium distachyon
BRADI4G32470
N
0.869
Pavir.Fa00651
Panicum virgatum
Pavir.Fa00651
N
0.864
Pavir.J25149
Panicum virgatum
Pavir.J25149
N
0.864
BRADI3G38360
Brachypodium distachyon
BRADI3G38360
N
0.864
Traes_2BL_649181D92
Triticum aestivum
Traes_2BL_649181D92
N
0.860
Traes_2AL_7A37B5232
Triticum aestivum
Traes_2AL_7A37B5232
N
0.860
TRIUR3_09991
Triticum urartu
TRIUR3_09991
N
0.860
Traes_2DL_5F0BD9D6F
Triticum aestivum
Traes_2DL_5F0BD9D6F
N
0.860
OPUNC09G11520
Oryza punctata
OPUNC09G11520
I
0.860
MLOC_70640
Hordeum vulgare
MLOC_70640
N
0.860
F775_02130
Aegilops tauschii
F775_02130
N
0.860
OMERI06G24090
Oryza meridionalis
OMERI06G24090
I
0.860
Traes_5BL_553BE31FE
Triticum aestivum
Traes_5BL_553BE31FE
N
0.849
PGSC0003DMG400010208
Solanum tuberosum
PGSC0003DMG400010208
I
0.847
Solyc02g076920.2
Solanum lycopersicum
Solyc02g076920.2
I
0.847
BGIOSGA030928
Oryza indica
BGIOSGA030928
N
0.847
mgf022146m
Mimulus guttatus
mgf022146m
N
0.845
MLOC_2366
Hordeum vulgare
MLOC_2366
N
0.845
MDP0000562627
Malus domestica
MDP0000562627
N
0.842