Pavir.Ca01107 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.Ca01107 T050708_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
PK20225.1
M01128_2.00
Cannabis sativa
NCACGTGVN

NBCACGTGN
PBM
Lambert et al.(2019)
pTH11274
0.839 0.735
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ca01107.1.p bHLH 67 115

Links

Other bHLH family TFs
Other Panicum virgatum TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Si002655m.g Setaria italica Si002655m.g I 0.914
Pavir.Ea00439 Panicum virgatum Pavir.Ea00439 I 0.914
GRMZM2G088443 Zea mays GRMZM2G088443 I 0.914
BRADI2G03830 Brachypodium distachyon BRADI2G03830 I 0.914
OPUNC01G03610 Oryza punctata OPUNC01G03610 N 0.912
ONIVA01G04390 Oryza nivara ONIVA01G04390 N 0.912
OMERI01G03850 Oryza meridionalis OMERI01G03850 N 0.912
ORGLA01G0034700 Oryza glaberrima ORGLA01G0034700 N 0.912
OGLUM01G04250 Oryza glumaepatula OGLUM01G04250 N 0.912
BGIOSGA002833 Oryza indica BGIOSGA002833 N 0.912
Si012213m.g Setaria italica Si012213m.g N 0.912
OBART01G03950 Oryza barthii OBART01G03950 N 0.912
Sb03g005250 Sorghum bicolor Sb03g005250 N 0.912
Pavir.J32610 Panicum virgatum Pavir.J32610 N 0.912
ORUFI01G04050 Oryza rufipogon ORUFI01G04050 N 0.912
GRMZM2G369629 Zea mays GRMZM2G369629 N 0.912
OB01G13800 Oryza brachyantha OB01G13800 N 0.912
LPERR01G03590 Leersia perrieri LPERR01G03590 I 0.893
ORGLA05G0041400 Oryza glaberrima ORGLA05G0041400 N 0.891
ORUFI05G04670 Oryza rufipogon ORUFI05G04670 N 0.891
OS05G0163900 Oryza sativa OS05G0163900 N 0.891
OBART05G04450 Oryza barthii OBART05G04450 N 0.891
OPUNC05G04080 Oryza punctata OPUNC05G04080 N 0.891
Sb09g004820 Sorghum bicolor Sb09g004820 N 0.891
LPERR05G03980 Leersia perrieri LPERR05G03980 N 0.891
OGLUM05G04370 Oryza glumaepatula OGLUM05G04370 N 0.891
OLONG_015419 Oryza longistaminata OLONG_015419 N 0.891
ONIVA05G04820 Oryza nivara ONIVA05G04820 N 0.891
OMERI05G04410 Oryza meridionalis OMERI05G04410 N 0.891
TRIUR3_12818 Triticum urartu TRIUR3_12818 N 0.870
Traes_1DS_CD79239C8 Triticum aestivum Traes_1DS_CD79239C8 N 0.870
Traes_1BS_1F372BED3 Triticum aestivum Traes_1BS_1F372BED3 N 0.870
F775_01873 Aegilops tauschii F775_01873 N 0.870
Traes_1AS_96F0745A2 Triticum aestivum Traes_1AS_96F0745A2 N 0.870
MLOC_69121 Hordeum vulgare MLOC_69121 N 0.870
OB05G14140 Oryza brachyantha OB05G14140 N 0.864
BRADI2G34600 Brachypodium distachyon BRADI2G34600 N 0.864
TRIUR3_07421 Triticum urartu TRIUR3_07421 N 0.861
F775_00759 Aegilops tauschii F775_00759 N 0.861
TRIUR3_21807 Triticum urartu TRIUR3_21807 N 0.861
TRAES3BF130100030CFD_g Triticum aestivum TRAES3BF130100030CFD_g N 0.861
Traes_3B_2DF1A6E5B Triticum aestivum Traes_3B_2DF1A6E5B N 0.861
Gorai.011G034000 Gossypium raimondii Gorai.011G034000 I 0.848
GSMUA_Achr5G29390_001 Musa acuminata GSMUA_Achr5G29390_001 N 0.843
evm.TU.supercontig_21.7 Carica papaya evm.TU.supercontig_21.7 N 0.841
PDK_20s1551661g004 Phoenix dactylifera PDK_20s1551661g004 N 0.840
orange1.1g024670m.g Citrus sinensis orange1.1g024670m.g I 0.839
MDP0000249969 Malus domestica MDP0000249969 I 0.839
PK20225.1 Cannabis sativa PK20225.1 D 0.839
Ciclev10016289m.g Citrus clementina Ciclev10016289m.g I 0.839
VIT_14s0068g01580 Vitis vinifera VIT_14s0068g01580 I 0.839
cassava32077.m1 Manihot esculenta cassava32077.m1 I 0.839
GLYMA07G32690 Glycine max GLYMA07G32690 I 0.839
evm.TU.supercontig_7.53 Carica papaya evm.TU.supercontig_7.53 I 0.839
Lus10001885.g Linum usitatissimum Lus10001885.g I 0.839