CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.Ha01426
(
Panicum virgatum
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Pavir.Ha01426
T050805_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
SCRM
M09784_2.00
Arabidopsis thaliana
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$ICE1_01
0.903
0.958
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ha01426.1.p
bHLH
330
377
AKNLMAERRRRKKLNDRLYMLRSVVPKISKMDRASILGDAVEYLKELL
Links
Other
bHLH
family TFs
Other
Panicum virgatum
TFs
191 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MTR_7g083900
Medicago truncatula
MTR_7g083900
I
0.914
Ca_23892
Cicer arietinum
Ca_23892
I
0.914
GSMUA_Achr11G09640_001
Musa acuminata
GSMUA_Achr11G09640_001
I
0.914
SELMODRAFT_119431
Selaginella moellendorffii
SELMODRAFT_119431
I
0.903
Sb05g019530
Sorghum bicolor
Sb05g019530
I
0.903
Cucsa.156040
Cucumis sativus
Cucsa.156040
I
0.903
PRUPE_ppa018220mg
Prunus persica
PRUPE_ppa018220mg
I
0.903
Sb03g044660
Sorghum bicolor
Sb03g044660
I
0.903
SELMODRAFT_138758
Selaginella moellendorffii
SELMODRAFT_138758
I
0.903
SELMODRAFT_75047
Selaginella moellendorffii
SELMODRAFT_75047
I
0.903
SELMODRAFT_91237
Selaginella moellendorffii
SELMODRAFT_91237
I
0.903
Gorai.001G275600
Gossypium raimondii
Gorai.001G275600
I
0.903
Gorai.007G044800
Gossypium raimondii
Gorai.007G044800
I
0.903
Cucsa.134750
Cucumis sativus
Cucsa.134750
I
0.903
Gorai.007G072600
Gossypium raimondii
Gorai.007G072600
I
0.903
PRUPE_ppa005038mg
Prunus persica
PRUPE_ppa005038mg
I
0.903
MDP0000304669
Malus domestica
MDP0000304669
I
0.903
OS11G0523700
Oryza sativa
OS11G0523700
I
0.903
orange1.1g047004m.g
Citrus sinensis
orange1.1g047004m.g
I
0.903
OS01G0928000
Oryza sativa
OS01G0928000
I
0.903
ORUFI11G16280
Oryza rufipogon
ORUFI11G16280
I
0.903
ORGLA11G0129200
Oryza glaberrima
ORGLA11G0129200
I
0.903
ORUFI01G46010
Oryza rufipogon
ORUFI01G46010
I
0.903
estExt_fgenesh1_pg.C_300202
Physcomitrella patens
estExt_fgenesh1_pg.C_300202
I
0.903
orange1.1g011370m.g
Citrus sinensis
orange1.1g011370m.g
I
0.903
MDP0000662999
Malus domestica
MDP0000662999
I
0.903
SELMODRAFT_94010
Selaginella moellendorffii
SELMODRAFT_94010
I
0.903
POPTR_0015s11650
Populus trichocarpa
POPTR_0015s11650
I
0.903
POPTR_0012s10780
Populus trichocarpa
POPTR_0012s10780
I
0.903
mgf016462m
Mimulus guttatus
mgf016462m
I
0.903
MDP0000247912
Malus domestica
MDP0000247912
I
0.903
Si001874m.g
Setaria italica
Si001874m.g
I
0.903
Ca_01394
Cicer arietinum
Ca_01394
I
0.903
Cla002682
Citrullus lanatus
Cla002682
I
0.903
VIT_17s0000g00330
Vitis vinifera
VIT_17s0000g00330
I
0.903
VIT_14s0068g01200
Vitis vinifera
VIT_14s0068g01200
I
0.903
Carubv10017099m.g
Capsella rubella
Carubv10017099m.g
I
0.903
VIT_01s0244g00130
Vitis vinifera
VIT_01s0244g00130
I
0.903
Cla003283
Citrullus lanatus
Cla003283
I
0.903
cassava37254.valid.m1
Manihot esculenta
cassava37254.valid.m1
I
0.903
Pm024587
Prunus mume
Pm024587
I
0.903
Bostr.13671s0164
Boechera stricta
Bostr.13671s0164
I
0.903
Pm016093
Prunus mume
Pm016093
I
0.903
cassava17838.valid.m1
Manihot esculenta
cassava17838.valid.m1
I
0.903
Cagra.23157s0001
Capsella grandiflora
Cagra.23157s0001
I
0.903
TRIUR3_17003
Triticum urartu
TRIUR3_17003
I
0.903
Ciclev10015052m.g
Citrus clementina
Ciclev10015052m.g
I
0.903
evm.TU.supercontig_70.77
Carica papaya
evm.TU.supercontig_70.77
I
0.903
Bostr.0556s0344
Boechera stricta
Bostr.0556s0344
I
0.903
Aquca_100_00035
Aquilegia coerulea
Aquca_100_00035
I
0.903
Solyc03g118310.2
Solanum lycopersicum
Solyc03g118310.2
I
0.903
gene06435-v1.0-hybrid
Fragaria vesca
gene06435-v1.0-hybrid
I
0.903
Si026212m.g
Setaria italica
Si026212m.g
I
0.903
TCM_014741
Theobroma cacao
TCM_014741
I
0.903
TCM_017336
Theobroma cacao
TCM_017336
I
0.903
Traes_7BL_BF5300D88
Triticum aestivum
Traes_7BL_BF5300D88
I
0.903
Traes_7DL_2A7EF919F
Triticum aestivum
Traes_7DL_2A7EF919F
I
0.903
Traes_7AL_ACAC47D88
Triticum aestivum
Traes_7AL_ACAC47D88
I
0.903
Eucgr.G01938
Eucalyptus grandis
Eucgr.G01938
I
0.903
TRAES3BF001100060CFD_g
Triticum aestivum
TRAES3BF001100060CFD_g
I
0.903
ORGLA01G0363500
Oryza glaberrima
ORGLA01G0363500
I
0.903
OPUNC11G12640
Oryza punctata
OPUNC11G12640
I
0.903
mgf012194m
Mimulus guttatus
mgf012194m
I
0.903
Thhalv10007566m.g
Eutrema salsugineum
Thhalv10007566m.g
I
0.903
BRADI2G59497
Brachypodium distachyon
BRADI2G59497
I
0.903
Bra034246
Brassica rapa
Bra034246
I
0.903
Bra025226
Brassica rapa
Bra025226
I
0.903
Bra032947
Brassica rapa
Bra032947
I
0.903
F775_14780
Aegilops tauschii
F775_14780
I
0.903
Thhalv10004059m.g
Eutrema salsugineum
Thhalv10004059m.g
I
0.903
GLYMA06G17330
Glycine max
GLYMA06G17330
I
0.903
SapurV1A.0672s0200
Salix purpurea
SapurV1A.0672s0200
I
0.903
SapurV1A.0774s0030
Salix purpurea
SapurV1A.0774s0030
I
0.903
GLYMA04G37750
Glycine max
GLYMA04G37750
I
0.903
ICE1
Arabidopsis lyrata
fgenesh2_kg.5__441__AT3G26744.2
I
0.903
Bra019794
Brassica rapa
Bra019794
I
0.903
Bra016749
Brassica rapa
Bra016749
I
0.903
BGIOSGA000206
Oryza indica
BGIOSGA000206
I
0.903
BGIOSGA035358
Oryza indica
BGIOSGA035358
I
0.903
SCRM
Arabidopsis thaliana
AT3G26744
D
0.903
SCRM2
Arabidopsis thaliana
AT1G12860
I
0.903
AMTR_s00016p00170610
Amborella trichopoda
AMTR_s00016p00170610
I
0.903
LjSGA_024382.1
Lotus japonicus
LjSGA_024382.1
I
0.903
Bo00285s440
Brassica oleracea
Bo00285s440
I
0.903
chr1.CM1880.50.nc
Lotus japonicus
chr1.CM1880.50.nc
I
0.903
Bo8g065080
Brassica oleracea
Bo8g065080
I
0.903
Bo9g008020
Brassica oleracea
Bo9g008020
I
0.903
Bo7g083870
Brassica oleracea
Bo7g083870
I
0.903
Bo5g016510
Brassica oleracea
Bo5g016510
I
0.903
PK06940.1
Cannabis sativa
PK06940.1
I
0.903
30147.m014419
Ricinus communis
30147.m014419
I
0.903
GLYMA16G05390
Glycine max
GLYMA16G05390
I
0.903
OBART01G42600
Oryza barthii
OBART01G42600
I
0.903
OBART11G15260
Oryza barthii
OBART11G15260
I
0.903
MTR_3g498695
Medicago truncatula
MTR_3g498695
I
0.903
MLOC_76805
Hordeum vulgare
MLOC_76805
I
0.903
Pavir.Eb03736
Panicum virgatum
Pavir.Eb03736
I
0.903
Pavir.Ea03858
Panicum virgatum
Pavir.Ea03858
I
0.903
OGLUM01G46870
Oryza glumaepatula
OGLUM01G46870
I
0.903
OGLUM11G14700
Oryza glumaepatula
OGLUM11G14700
I
0.903
ONIVA12G10770
Oryza nivara
ONIVA12G10770
I
0.903
OPUNC01G41620
Oryza punctata
OPUNC01G41620
I
0.903
ONIVA01G48650
Oryza nivara
ONIVA01G48650
I
0.903
OMERI11G12580
Oryza meridionalis
OMERI11G12580
I
0.903
OMERI01G39590
Oryza meridionalis
OMERI01G39590
I
0.903
SapurV1A.0517s0250
Salix purpurea
SapurV1A.0517s0250
I
0.903
MLOC_46407
Hordeum vulgare
MLOC_46407
I
0.903
GRMZM2G172297
Zea mays
GRMZM2G172297
I
0.903
GRMZM2G173534
Zea mays
GRMZM2G173534
I
0.903
GRMZM2G033356
Zea mays
GRMZM2G033356
I
0.903
GLYMA19G27483
Glycine max
GLYMA19G27483
I
0.903
Pavir.Hb00982
Panicum virgatum
Pavir.Hb00982
I
0.903
GSMUA_Achr10G12060_001
Musa acuminata
GSMUA_Achr10G12060_001
I
0.903
GSMUA_Achr10G18380_001
Musa acuminata
GSMUA_Achr10G18380_001
I
0.903
LPERR11G11940
Leersia perrieri
LPERR11G11940
I
0.903
LPERR01G37160
Leersia perrieri
LPERR01G37160
I
0.903
GSMUA_Achr6G08070_001
Musa acuminata
GSMUA_Achr6G08070_001
I
0.903
mgf015974m
Mimulus guttatus
mgf015974m
I
0.903
estExt_Genewise1.C_510113
Physcomitrella patens
estExt_Genewise1.C_510113
I
0.903
Aquca_019_00147
Aquilegia coerulea
Aquca_019_00147
I
0.879
gw1.257.54.1
Physcomitrella patens
gw1.257.54.1
I
0.879
PGSC0003DMG400014246
Solanum tuberosum
PGSC0003DMG400014246
I
0.879
GSMUA_Achr1G07330_001
Musa acuminata
GSMUA_Achr1G07330_001
I
0.879
PK06841.1
Cannabis sativa
PK06841.1
I
0.879
PDK_20s1347451g001
Phoenix dactylifera
PDK_20s1347451g001
I
0.879
GSMUA_Achr1G07450_001
Musa acuminata
GSMUA_Achr1G07450_001
I
0.879
MDP0000219146
Malus domestica
MDP0000219146
I
0.879
evm.TU.supercontig_1024.1
Carica papaya
evm.TU.supercontig_1024.1
I
0.879
Aquca_072_00056
Aquilegia coerulea
Aquca_072_00056
I
0.876
SCRM2
Arabidopsis lyrata
Al_scaffold_0001_1326
I
0.876
gw1.90.96.1
Physcomitrella patens
gw1.90.96.1
I
0.876
POPTR_0006s07420
Populus trichocarpa
POPTR_0006s07420
I
0.876
estExt_fgenesh1_pg.C_1240017
Physcomitrella patens
estExt_fgenesh1_pg.C_1240017
I
0.876
Carubv10009081m.g
Capsella rubella
Carubv10009081m.g
I
0.873
Lus10043199.g
Linum usitatissimum
Lus10043199.g
I
0.873
Cagra.0568s0207
Capsella grandiflora
Cagra.0568s0207
I
0.873
Lus10032542.g
Linum usitatissimum
Lus10032542.g
I
0.873
Solyc06g068870.2
Solanum lycopersicum
Solyc06g068870.2
I
0.873
BRADI4G17460
Brachypodium distachyon
BRADI4G17460
I
0.873
GLYMA05G38530
Glycine max
GLYMA05G38530
I
0.873
PGSC0003DMG401028788
Solanum tuberosum
PGSC0003DMG401028788
I
0.873
30131.m006993
Ricinus communis
30131.m006993
I
0.868
cassava7475.valid.m1
Manihot esculenta
cassava7475.valid.m1
I
0.868
Eucgr.G01783
Eucalyptus grandis
Eucgr.G01783
I
0.866
VIT_01s0127g00860
Vitis vinifera
VIT_01s0127g00860
I
0.866
evm.TU.supercontig_20.95
Carica papaya
evm.TU.supercontig_20.95
I
0.866
SapurV1A.0140s0250
Salix purpurea
SapurV1A.0140s0250
I
0.863
SapurV1A.3355s0020
Salix purpurea
SapurV1A.3355s0020
I
0.863
POPTR_0018s13830
Populus trichocarpa
POPTR_0018s13830
I
0.863
MLOC_56814
Hordeum vulgare
MLOC_56814
I
0.860
SELMODRAFT_430203
Selaginella moellendorffii
SELMODRAFT_430203
I
0.859
SELMODRAFT_451590
Selaginella moellendorffii
SELMODRAFT_451590
I
0.859
SELMODRAFT_16039
Selaginella moellendorffii
SELMODRAFT_16039
I
0.859
SELMODRAFT_16038
Selaginella moellendorffii
SELMODRAFT_16038
I
0.859
PRUPE_ppa010972mg
Prunus persica
PRUPE_ppa010972mg
I
0.859
Cla016068
Citrullus lanatus
Cla016068
I
0.859
estExt_fgenesh1_pg.C_1590022
Physcomitrella patens
estExt_fgenesh1_pg.C_1590022
I
0.859
Cucsa.010660
Cucumis sativus
Cucsa.010660
I
0.859
Pm008898
Prunus mume
Pm008898
I
0.859
e_gw1.25.105.1
Physcomitrella patens
e_gw1.25.105.1
I
0.859
AMTR_s00096p00160080
Amborella trichopoda
AMTR_s00096p00160080
I
0.858
fgenesh1_pg.scaffold_1000274
Physcomitrella patens
fgenesh1_pg.scaffold_1000274
I
0.855
estExt_gwp_gw1.C_1820005
Physcomitrella patens
estExt_gwp_gw1.C_1820005
I
0.855
MLOC_52192
Hordeum vulgare
MLOC_52192
I
0.849
F775_15875
Aegilops tauschii
F775_15875
I
0.849
AMTR_s00019p00254380
Amborella trichopoda
AMTR_s00019p00254380
I
0.849
BRADI3G01910
Brachypodium distachyon
BRADI3G01910
I
0.849
Pavir.Ab00204
Panicum virgatum
Pavir.Ab00204
I
0.849
GLYMA13G00480
Glycine max
GLYMA13G00480
I
0.849
GLYMA17G06610
Glycine max
GLYMA17G06610
I
0.849
Sb04g001650
Sorghum bicolor
Sb04g001650
I
0.849
Ciclev10033428m.g
Citrus clementina
Ciclev10033428m.g
I
0.849
Traes_4DS_7B0E8D459
Triticum aestivum
Traes_4DS_7B0E8D459
I
0.849
Cla023112
Citrullus lanatus
Cla023112
I
0.849
TRIUR3_16046
Triticum urartu
TRIUR3_16046
I
0.849
orange1.1g041101m.g
Citrus sinensis
orange1.1g041101m.g
I
0.849
Cucsa.088960
Cucumis sativus
Cucsa.088960
I
0.849
TCM_006602
Theobroma cacao
TCM_006602
I
0.846
PK03241.1
Cannabis sativa
PK03241.1
I
0.846
PGSC0003DMG400008195
Solanum tuberosum
PGSC0003DMG400008195
I
0.846
Solyc08g062780.1
Solanum lycopersicum
Solyc08g062780.1
I
0.846
PRUPE_ppa002978mg
Prunus persica
PRUPE_ppa002978mg
I
0.846
GLYMA16G26291
Glycine max
GLYMA16G26291
I
0.846
Gorai.008G036900
Gossypium raimondii
Gorai.008G036900
I
0.846
Si006500m.g
Setaria italica
Si006500m.g
I
0.846
Lus10030609.g
Linum usitatissimum
Lus10030609.g
N
0.845
Bo01390s040
Brassica oleracea
Bo01390s040
I
0.841
Bo5g016490
Brassica oleracea
Bo5g016490
I
0.841
POPTR_0018s13850
Populus trichocarpa
POPTR_0018s13850
I
0.839
SapurV1A.0140s0240
Salix purpurea
SapurV1A.0140s0240
I
0.839
SapurV1A.3355s0010
Salix purpurea
SapurV1A.3355s0010
I
0.839