CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Pavir.Ia03339
(
Panicum virgatum
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Pavir.Ia03339
T050826_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
AT2G22750
M06730_2.00
Arabidopsis thaliana
MRYGTKDNHCACGTGNN
NNCACGTGDNHMACRYK
Dap-seq
OMalley et al.(2016)
bHLH18_col_a
0.851
0.653
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.Ia03339.1.p
bHLH
180
228
THDHIMAERKRREKIKQLFVELSAVIPGLKKMDKATILSEAMMYVKKLQ
Links
Other
bHLH
family TFs
Other
Panicum virgatum
TFs
188 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Sb08g022760
Sorghum bicolor
Sb08g022760
I
0.878
OGLUM12G21470
Oryza glumaepatula
OGLUM12G21470
I
0.878
GRMZM2G155043
Zea mays
GRMZM2G155043
I
0.878
GRMZM2G355469
Zea mays
GRMZM2G355469
I
0.878
OPUNC03G26600
Oryza punctata
OPUNC03G26600
I
0.878
GRMZM2G068604
Zea mays
GRMZM2G068604
I
0.878
OGLUM03G29270
Oryza glumaepatula
OGLUM03G29270
I
0.878
Pavir.Ib04096
Panicum virgatum
Pavir.Ib04096
I
0.878
Si011972m.g
Setaria italica
Si011972m.g
I
0.878
GRMZM2G049686
Zea mays
GRMZM2G049686
I
0.878
Sb06g017460
Sorghum bicolor
Sb06g017460
I
0.878
Sb01g012280
Sorghum bicolor
Sb01g012280
I
0.878
OB03G36530
Oryza brachyantha
OB03G36530
I
0.878
OS12G0632600
Oryza sativa
OS12G0632600
I
0.878
OBART12G19700
Oryza barthii
OBART12G19700
I
0.878
Pavir.Ib04190
Panicum virgatum
Pavir.Ib04190
I
0.878
ORUFI12G22050
Oryza rufipogon
ORUFI12G22050
I
0.878
MLOC_42946
Hordeum vulgare
MLOC_42946
I
0.878
Sb01g012260
Sorghum bicolor
Sb01g012260
I
0.878
LPERR03G24050
Leersia perrieri
LPERR03G24050
I
0.878
Pavir.Ib04188
Panicum virgatum
Pavir.Ib04188
I
0.878
LPERR12G16560
Leersia perrieri
LPERR12G16560
I
0.878
Si038721m.g
Setaria italica
Si038721m.g
I
0.878
Si036185m.g
Setaria italica
Si036185m.g
I
0.878
Pavir.Ia01004
Panicum virgatum
Pavir.Ia01004
I
0.878
OMERI12G15000
Oryza meridionalis
OMERI12G15000
I
0.878
Si039325m.g
Setaria italica
Si039325m.g
I
0.878
ORGLA12G0170500
Oryza glaberrima
ORGLA12G0170500
I
0.878
ONIVA03G07570
Oryza nivara
ONIVA03G07570
I
0.878
BGIOSGA037855
Oryza indica
BGIOSGA037855
I
0.878
OPUNC12G17950
Oryza punctata
OPUNC12G17950
I
0.878
BGIOSGA010080
Oryza indica
BGIOSGA010080
I
0.878
Pavir.J30022
Panicum virgatum
Pavir.J30022
I
0.878
ORGLA03G0269200
Oryza glaberrima
ORGLA03G0269200
I
0.878
TRIUR3_05977
Triticum urartu
TRIUR3_05977
I
0.878
Pavir.Ia01038
Panicum virgatum
Pavir.Ia01038
I
0.878
Pavir.Ia01059
Panicum virgatum
Pavir.Ia01059
I
0.878
BRADI1G12770
Brachypodium distachyon
BRADI1G12770
I
0.878
OLONG_017178
Oryza longistaminata
OLONG_017178
I
0.878
OLONG_002504
Oryza longistaminata
OLONG_002504
I
0.878
OMERI03G25360
Oryza meridionalis
OMERI03G25360
I
0.878
BRADI4G00920
Brachypodium distachyon
BRADI4G00920
I
0.878
Traes_4DS_6A9EB40A4
Triticum aestivum
Traes_4DS_6A9EB40A4
I
0.878
F775_11635
Aegilops tauschii
F775_11635
I
0.878
GLYMA05G23291
Glycine max
GLYMA05G23291
I
0.877
MTR_4g097940
Medicago truncatula
MTR_4g097940
I
0.875
GLYMA17G16741
Glycine max
GLYMA17G16741
I
0.875
POPTR_0007s14480
Populus trichocarpa
POPTR_0007s14480
I
0.860
SapurV1A.0821s0050
Salix purpurea
SapurV1A.0821s0050
I
0.860
Gorai.012G161900
Gossypium raimondii
Gorai.012G161900
I
0.855
Ca_05320
Cicer arietinum
Ca_05320
I
0.855
Si011709m.g
Setaria italica
Si011709m.g
I
0.854
F775_12608
Aegilops tauschii
F775_12608
I
0.854
TRIUR3_13152
Triticum urartu
TRIUR3_13152
I
0.854
GRMZM2G120021
Zea mays
GRMZM2G120021
I
0.854
chr2.CM0021.410.nc
Lotus japonicus
chr2.CM0021.410.nc
I
0.852
evm.TU.supercontig_20.63
Carica papaya
evm.TU.supercontig_20.63
I
0.851
Eucgr.H02390
Eucalyptus grandis
Eucgr.H02390
I
0.851
MDP0000170202
Malus domestica
MDP0000170202
I
0.851
Ca_02263
Cicer arietinum
Ca_02263
I
0.851
Solyc01g106460.2
Solanum lycopersicum
Solyc01g106460.2
I
0.851
MDP0000159571
Malus domestica
MDP0000159571
I
0.851
Eucgr.H02389
Eucalyptus grandis
Eucgr.H02389
I
0.851
PGSC0003DMG400005101
Solanum tuberosum
PGSC0003DMG400005101
I
0.851
Bra030210
Brassica rapa
Bra030210
I
0.851
Bra039924
Brassica rapa
Bra039924
I
0.851
PDK_20s1394471g002
Phoenix dactylifera
PDK_20s1394471g002
I
0.851
MTR_4g097920
Medicago truncatula
MTR_4g097920
I
0.851
AT2G22750
Arabidopsis thaliana
AT2G22750
D
0.851
Bo4g150960
Brassica oleracea
Bo4g150960
I
0.851
Thhalv10000426m.g
Eutrema salsugineum
Thhalv10000426m.g
I
0.851
cassava35671.valid.m1
Manihot esculenta
cassava35671.valid.m1
I
0.849
orange1.1g021208m.g
Citrus sinensis
orange1.1g021208m.g
I
0.849
cassava37087.valid.m1
Manihot esculenta
cassava37087.valid.m1
I
0.849
Cucsa.218800
Cucumis sativus
Cucsa.218800
I
0.849
MDP0000502440
Malus domestica
MDP0000502440
I
0.849
Cagra.5392s0006
Capsella grandiflora
Cagra.5392s0006
I
0.849
Aquca_010_00012
Aquilegia coerulea
Aquca_010_00012
I
0.849
MDP0000318216
Malus domestica
MDP0000318216
I
0.849
cassava16019.m1
Manihot esculenta
cassava16019.m1
I
0.849
Pm021008
Prunus mume
Pm021008
I
0.849
Pm002305
Prunus mume
Pm002305
I
0.849
orange1.1g037441m.g
Citrus sinensis
orange1.1g037441m.g
I
0.849
28179.m000478
Ricinus communis
28179.m000478
I
0.849
28179.m000479
Ricinus communis
28179.m000479
I
0.849
cassava18197.valid.m1
Manihot esculenta
cassava18197.valid.m1
I
0.849
Cagra.6066s0006
Capsella grandiflora
Cagra.6066s0006
I
0.849
29804.m001498
Ricinus communis
29804.m001498
I
0.849
cassava20178.m1
Manihot esculenta
cassava20178.m1
I
0.849
Ciclev10027158m.g
Citrus clementina
Ciclev10027158m.g
I
0.849
Gorai.007G228900
Gossypium raimondii
Gorai.007G228900
I
0.849
Gorai.003G034700
Gossypium raimondii
Gorai.003G034700
I
0.849
MDP0000291132
Malus domestica
MDP0000291132
I
0.849
Gorai.002G211500
Gossypium raimondii
Gorai.002G211500
I
0.849
MDP0000174149
Malus domestica
MDP0000174149
I
0.849
BHLH25
Arabidopsis thaliana
AT4G37850
I
0.849
Lus10039639.g
Linum usitatissimum
Lus10039639.g
I
0.849
Lus10020503.g
Linum usitatissimum
Lus10020503.g
I
0.849
Lus10012457.g
Linum usitatissimum
Lus10012457.g
I
0.849
Lus10003488.g
Linum usitatissimum
Lus10003488.g
I
0.849
gene05612-v1.0-hybrid
Fragaria vesca
gene05612-v1.0-hybrid
I
0.849
gene05610-v1.0-hybrid
Fragaria vesca
gene05610-v1.0-hybrid
I
0.849
Bo1g003350
Brassica oleracea
Bo1g003350
I
0.849
Ciclev10028925m.g
Citrus clementina
Ciclev10028925m.g
I
0.849
Cla000123
Citrullus lanatus
Cla000123
I
0.849
Carubv10025041m.g
Capsella rubella
Carubv10025041m.g
I
0.849
BGIOSGA013493
Oryza indica
BGIOSGA013493
I
0.849
Eucgr.I00634
Eucalyptus grandis
Eucgr.I00634
I
0.849
PDK_20s1524891g002
Phoenix dactylifera
PDK_20s1524891g002
I
0.849
evm.TU.supercontig_129.37
Carica papaya
evm.TU.supercontig_129.37
I
0.849
Eucgr.I02518
Eucalyptus grandis
Eucgr.I02518
I
0.849
Carubv10006834m.g
Capsella rubella
Carubv10006834m.g
I
0.849
VIT_07s0205g00160
Vitis vinifera
VIT_07s0205g00160
I
0.849
POPTR_0005s09810
Populus trichocarpa
POPTR_0005s09810
I
0.849
POPTR_0001s29400
Populus trichocarpa
POPTR_0001s29400
I
0.849
SapurV1A.3034s0010
Salix purpurea
SapurV1A.3034s0010
I
0.849
OBART03G32580
Oryza barthii
OBART03G32580
I
0.849
POPTR_0009s08500
Populus trichocarpa
POPTR_0009s08500
I
0.849
PRUPE_ppa008130mg
Prunus persica
PRUPE_ppa008130mg
I
0.849
LPERR03G27220
Leersia perrieri
LPERR03G27220
I
0.849
Sb01g009590
Sorghum bicolor
Sb01g009590
I
0.849
PRUPE_ppa017640mg
Prunus persica
PRUPE_ppa017640mg
I
0.849
OS03G0725800
Oryza sativa
OS03G0725800
I
0.849
SapurV1A.0279s0180
Salix purpurea
SapurV1A.0279s0180
I
0.849
SapurV1A.0019s0910
Salix purpurea
SapurV1A.0019s0910
I
0.849
ONIVA03G34090
Oryza nivara
ONIVA03G34090
I
0.849
Pavir.J35103
Panicum virgatum
Pavir.J35103
I
0.849
ORGLA03G0295100
Oryza glaberrima
ORGLA03G0295100
I
0.849
OMERI03G29350
Oryza meridionalis
OMERI03G29350
I
0.849
OGLUM03G32210
Oryza glumaepatula
OGLUM03G32210
I
0.849
ORUFI03G33950
Oryza rufipogon
ORUFI03G33950
I
0.849
Pavir.J01849
Panicum virgatum
Pavir.J01849
I
0.849
GSMUA_AchrUn_randomG15440_001
Musa acuminata
GSMUA_AchrUn_randomG15440_001
I
0.849
GSMUA_Achr2G08590_001
Musa acuminata
GSMUA_Achr2G08590_001
I
0.849
TCM_000895
Theobroma cacao
TCM_000895
I
0.849
fgenesh2_kg.4__196__AT2G22750.1
Arabidopsis lyrata
fgenesh2_kg.4__196__AT2G22750.1
I
0.849
LjT17L12.80.nd
Lotus japonicus
LjT17L12.80.nd
I
0.849
GLYMA11G04690
Glycine max
GLYMA11G04690
I
0.849
TCM_006357
Theobroma cacao
TCM_006357
I
0.849
Bra011790
Brassica rapa
Bra011790
I
0.849
Bra010617
Brassica rapa
Bra010617
I
0.849
OPUNC03G29750
Oryza punctata
OPUNC03G29750
I
0.849
VIT_03s0088g01240
Vitis vinifera
VIT_03s0088g01240
I
0.849
chr2.CM0021.380.nc
Lotus japonicus
chr2.CM0021.380.nc
I
0.849
Si036393m.g
Setaria italica
Si036393m.g
I
0.849
SELMODRAFT_48361
Selaginella moellendorffii
SELMODRAFT_48361
I
0.849
SELMODRAFT_34848
Selaginella moellendorffii
SELMODRAFT_34848
I
0.849
Thhalv10025715m.g
Eutrema salsugineum
Thhalv10025715m.g
I
0.849
GRMZM2G082343
Zea mays
GRMZM2G082343
I
0.849
PK09122.1
Cannabis sativa
PK09122.1
I
0.849
PK11573.1
Cannabis sativa
PK11573.1
I
0.849
GRMZM2G019806
Zea mays
GRMZM2G019806
I
0.849
AMTR_s00033p00078670
Amborella trichopoda
AMTR_s00033p00078670
I
0.849
Bo3g153150
Brassica oleracea
Bo3g153150
I
0.849
Si022171m.g
Setaria italica
Si022171m.g
I
0.848
ONIVA03G30250
Oryza nivara
ONIVA03G30250
I
0.848
ORGLA03G0268800
Oryza glaberrima
ORGLA03G0268800
I
0.848
ORUFI03G30180
Oryza rufipogon
ORUFI03G30180
I
0.848
OGLUM03G29200
Oryza glumaepatula
OGLUM03G29200
I
0.848
OBART03G29020
Oryza barthii
OBART03G29020
I
0.848
BGIOSGA013293
Oryza indica
BGIOSGA013293
I
0.848
F775_11133
Aegilops tauschii
F775_11133
I
0.848
GRMZM2G095899
Zea mays
GRMZM2G095899
I
0.848
Sb01g012250
Sorghum bicolor
Sb01g012250
I
0.848
OPUNC03G26580
Oryza punctata
OPUNC03G26580
I
0.848
TRIUR3_29908
Triticum urartu
TRIUR3_29908
I
0.848
OS03G0671800
Oryza sativa
OS03G0671800
I
0.847
Si024086m.g
Setaria italica
Si024086m.g
I
0.846
GRMZM2G036554
Zea mays
GRMZM2G036554
I
0.846
Pavir.J26871
Panicum virgatum
Pavir.J26871
I
0.846
mg004185m
Mimulus guttatus
mg004185m
I
0.845
mg008709m
Mimulus guttatus
mg008709m
I
0.845
MTR_5g014520
Medicago truncatula
MTR_5g014520
I
0.839
GLYMA11G04681
Glycine max
GLYMA11G04681
I
0.839
chr5.CM0158.350.nd
Lotus japonicus
chr5.CM0158.350.nd
I
0.839
Cucsa.103630
Cucumis sativus
Cucsa.103630
I
0.839
chr3.LjT47G05.50.nc
Lotus japonicus
chr3.LjT47G05.50.nc
I
0.839
GLYMA01G40620
Glycine max
GLYMA01G40620
I
0.839
Ca_02264
Cicer arietinum
Ca_02264
I
0.839
Gorai.007G229000
Gossypium raimondii
Gorai.007G229000
I
0.838
Gorai.003G034600
Gossypium raimondii
Gorai.003G034600
I
0.838
LjSGA_136560.1
Lotus japonicus
LjSGA_136560.1
I
0.838
GSMUA_Achr4G23070_001
Musa acuminata
GSMUA_Achr4G23070_001
I
0.838
TCM_000894
Theobroma cacao
TCM_000894
I
0.838
Gorai.008G087600
Gossypium raimondii
Gorai.008G087600
I
0.838
Cla014288
Citrullus lanatus
Cla014288
I
0.838
GLYMA15G06680
Glycine max
GLYMA15G06680
I
0.838
GLYMA13G32650
Glycine max
GLYMA13G32650
I
0.838