Pavir.Ia03339 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.Ia03339 T050826_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT2G22750
M06730_2.00
Arabidopsis thaliana
MRYGTKDNHCACGTGNN

NNCACGTGDNHMACRYK
Dap-seq
OMalley et al.(2016)
bHLH18_col_a
0.851 0.653
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia03339.1.p bHLH 180 228

Links

Other bHLH family TFs
Other Panicum virgatum TFs

188 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AT2G22750 Arabidopsis thaliana AT2G22750 D 0.851
evm.TU.supercontig_20.63 Carica papaya evm.TU.supercontig_20.63 I 0.851
mg008709m Mimulus guttatus mg008709m I 0.845
mg004185m Mimulus guttatus mg004185m I 0.845
Cucsa.218800 Cucumis sativus Cucsa.218800 I 0.849
Cucsa.103630 Cucumis sativus Cucsa.103630 I 0.839
cassava37087.valid.m1 Manihot esculenta cassava37087.valid.m1 I 0.849
cassava35671.valid.m1 Manihot esculenta cassava35671.valid.m1 I 0.849
cassava20178.m1 Manihot esculenta cassava20178.m1 I 0.849
cassava18197.valid.m1 Manihot esculenta cassava18197.valid.m1 I 0.849
cassava16019.m1 Manihot esculenta cassava16019.m1 I 0.849
Aquca_010_00012 Aquilegia coerulea Aquca_010_00012 I 0.849
Cagra.5392s0006 Capsella grandiflora Cagra.5392s0006 I 0.849
Cagra.6066s0006 Capsella grandiflora Cagra.6066s0006 I 0.849
evm.TU.supercontig_129.37 Carica papaya evm.TU.supercontig_129.37 I 0.849
Eucgr.I02518 Eucalyptus grandis Eucgr.I02518 I 0.849
Eucgr.I00634 Eucalyptus grandis Eucgr.I00634 I 0.849
Eucgr.H02390 Eucalyptus grandis Eucgr.H02390 I 0.851
Eucgr.H02389 Eucalyptus grandis Eucgr.H02389 I 0.851
Ciclev10028925m.g Citrus clementina Ciclev10028925m.g I 0.849
Ciclev10027158m.g Citrus clementina Ciclev10027158m.g I 0.849
Carubv10025041m.g Capsella rubella Carubv10025041m.g I 0.849
Carubv10006834m.g Capsella rubella Carubv10006834m.g I 0.849
29804.m001498 Ricinus communis 29804.m001498 I 0.849
28179.m000479 Ricinus communis 28179.m000479 I 0.849
TRIUR3_05977 Triticum urartu TRIUR3_05977 I 0.878
Traes_4DS_6A9EB40A4 Triticum aestivum Traes_4DS_6A9EB40A4 I 0.878
TCM_006357 Theobroma cacao TCM_006357 I 0.849
TCM_000895 Theobroma cacao TCM_000895 I 0.849
TCM_000894 Theobroma cacao TCM_000894 I 0.838
Solyc01g106460.2 Solanum lycopersicum Solyc01g106460.2 I 0.851
Si039325m.g Setaria italica Si039325m.g I 0.878
Si038721m.g Setaria italica Si038721m.g I 0.878
Si036393m.g Setaria italica Si036393m.g I 0.849
TRIUR3_13152 Triticum urartu TRIUR3_13152 I 0.854
TRIUR3_29908 Triticum urartu TRIUR3_29908 I 0.848
VIT_03s0088g01240 Vitis vinifera VIT_03s0088g01240 I 0.849
28179.m000478 Ricinus communis 28179.m000478 I 0.849
Pm021008 Prunus mume Pm021008 I 0.849
Pm002305 Prunus mume Pm002305 I 0.849
Cla014288 Citrullus lanatus Cla014288 I 0.838
Cla000123 Citrullus lanatus Cla000123 I 0.849
Ca_05320 Cicer arietinum Ca_05320 I 0.855
Ca_02264 Cicer arietinum Ca_02264 I 0.839
Ca_02263 Cicer arietinum Ca_02263 I 0.851
VIT_07s0205g00160 Vitis vinifera VIT_07s0205g00160 I 0.849
Si036185m.g Setaria italica Si036185m.g I 0.878
gene05610-v1.0-hybrid Fragaria vesca gene05610-v1.0-hybrid I 0.849
PDK_20s1524891g002 Phoenix dactylifera PDK_20s1524891g002 I 0.849
SapurV1A.0821s0050 Salix purpurea SapurV1A.0821s0050 I 0.860
SapurV1A.0279s0180 Salix purpurea SapurV1A.0279s0180 I 0.849
SapurV1A.0019s0910 Salix purpurea SapurV1A.0019s0910 I 0.849
Pavir.J35103 Panicum virgatum Pavir.J35103 I 0.849
Pavir.J30022 Panicum virgatum Pavir.J30022 I 0.878
Pavir.J26871 Panicum virgatum Pavir.J26871 I 0.846
Pavir.J01849 Panicum virgatum Pavir.J01849 I 0.849
Pavir.Ib04190 Panicum virgatum Pavir.Ib04190 I 0.878
Pavir.Ib04188 Panicum virgatum Pavir.Ib04188 I 0.878
SapurV1A.3034s0010 Salix purpurea SapurV1A.3034s0010 I 0.849
Thhalv10000426m.g Eutrema salsugineum Thhalv10000426m.g I 0.851
Thhalv10025715m.g Eutrema salsugineum Thhalv10025715m.g I 0.849
PDK_20s1394471g002 Phoenix dactylifera PDK_20s1394471g002 I 0.851
LjT17L12.80.nd Lotus japonicus LjT17L12.80.nd I 0.849
LjSGA_136560.1 Lotus japonicus LjSGA_136560.1 I 0.838
chr5.CM0158.350.nd Lotus japonicus chr5.CM0158.350.nd I 0.839
chr3.LjT47G05.50.nc Lotus japonicus chr3.LjT47G05.50.nc I 0.839
chr2.CM0021.410.nc Lotus japonicus chr2.CM0021.410.nc I 0.852
chr2.CM0021.380.nc Lotus japonicus chr2.CM0021.380.nc I 0.849
PK11573.1 Cannabis sativa PK11573.1 I 0.849
PK09122.1 Cannabis sativa PK09122.1 I 0.849
Pavir.Ib04096 Panicum virgatum Pavir.Ib04096 I 0.878
Pavir.Ia01059 Panicum virgatum Pavir.Ia01059 I 0.878
Lus10012457.g Linum usitatissimum Lus10012457.g I 0.849
Lus10003488.g Linum usitatissimum Lus10003488.g I 0.849
Gorai.012G161900 Gossypium raimondii Gorai.012G161900 I 0.855
Gorai.008G087600 Gossypium raimondii Gorai.008G087600 I 0.838
Gorai.007G229000 Gossypium raimondii Gorai.007G229000 I 0.838
Gorai.007G228900 Gossypium raimondii Gorai.007G228900 I 0.849
Gorai.003G034700 Gossypium raimondii Gorai.003G034700 I 0.849
Gorai.003G034600 Gossypium raimondii Gorai.003G034600 I 0.838
Gorai.002G211500 Gossypium raimondii Gorai.002G211500 I 0.849
Lus10020503.g Linum usitatissimum Lus10020503.g I 0.849
Lus10039639.g Linum usitatissimum Lus10039639.g I 0.849
MDP0000159571 Malus domestica MDP0000159571 I 0.851
Pavir.Ia01038 Panicum virgatum Pavir.Ia01038 I 0.878
Pavir.Ia01004 Panicum virgatum Pavir.Ia01004 I 0.878
orange1.1g037441m.g Citrus sinensis orange1.1g037441m.g I 0.849
orange1.1g021208m.g Citrus sinensis orange1.1g021208m.g I 0.849
MDP0000502440 Malus domestica MDP0000502440 I 0.849
MDP0000318216 Malus domestica MDP0000318216 I 0.849
MDP0000291132 Malus domestica MDP0000291132 I 0.849
MDP0000174149 Malus domestica MDP0000174149 I 0.849
MDP0000170202 Malus domestica MDP0000170202 I 0.851
gene05612-v1.0-hybrid Fragaria vesca gene05612-v1.0-hybrid I 0.849
Si024086m.g Setaria italica Si024086m.g I 0.846
OB03G36530 Oryza brachyantha OB03G36530 I 0.878
GRMZM2G120021 Zea mays GRMZM2G120021 I 0.854
GRMZM2G095899 Zea mays GRMZM2G095899 I 0.848
GRMZM2G082343 Zea mays GRMZM2G082343 I 0.849
GRMZM2G068604 Zea mays GRMZM2G068604 I 0.878
GRMZM2G049686 Zea mays GRMZM2G049686 I 0.878
GRMZM2G036554 Zea mays GRMZM2G036554 I 0.846
GRMZM2G019806 Zea mays GRMZM2G019806 I 0.849
GLYMA17G16741 Glycine max GLYMA17G16741 I 0.875
GLYMA15G06680 Glycine max GLYMA15G06680 I 0.838
GRMZM2G155043 Zea mays GRMZM2G155043 I 0.878
GRMZM2G355469 Zea mays GRMZM2G355469 I 0.878
GSMUA_Achr2G08590_001 Musa acuminata GSMUA_Achr2G08590_001 I 0.849
MTR_5g014520 Medicago truncatula MTR_5g014520 I 0.839
MTR_4g097940 Medicago truncatula MTR_4g097940 I 0.875
MTR_4g097920 Medicago truncatula MTR_4g097920 I 0.851
MLOC_42946 Hordeum vulgare MLOC_42946 I 0.878
LPERR12G16560 Leersia perrieri LPERR12G16560 I 0.878
LPERR03G27220 Leersia perrieri LPERR03G27220 I 0.849
LPERR03G24050 Leersia perrieri LPERR03G24050 I 0.878
GSMUA_AchrUn_randomG15440_001 Musa acuminata GSMUA_AchrUn_randomG15440_001 I 0.849
GSMUA_Achr4G23070_001 Musa acuminata GSMUA_Achr4G23070_001 I 0.838
GLYMA13G32650 Glycine max GLYMA13G32650 I 0.838
GLYMA11G04690 Glycine max GLYMA11G04690 I 0.849
Bra010617 Brassica rapa Bra010617 I 0.849
Bo4g150960 Brassica oleracea Bo4g150960 I 0.851
Bo3g153150 Brassica oleracea Bo3g153150 I 0.849
Bo1g003350 Brassica oleracea Bo1g003350 I 0.849
BGIOSGA037855 Oryza indica BGIOSGA037855 I 0.878
BGIOSGA013493 Oryza indica BGIOSGA013493 I 0.849
BGIOSGA013293 Oryza indica BGIOSGA013293 I 0.848
BGIOSGA010080 Oryza indica BGIOSGA010080 I 0.878
BHLH25 Arabidopsis thaliana AT4G37850 I 0.849
Bra011790 Brassica rapa Bra011790 I 0.849
Bra030210 Brassica rapa Bra030210 I 0.851
Bra039924 Brassica rapa Bra039924 I 0.851
GLYMA11G04681 Glycine max GLYMA11G04681 I 0.839
GLYMA05G23291 Glycine max GLYMA05G23291 I 0.877
GLYMA01G40620 Glycine max GLYMA01G40620 I 0.839
fgenesh2_kg.4__196__AT2G22750.1 Arabidopsis lyrata fgenesh2_kg.4__196__AT2G22750.1 I 0.849
F775_12608 Aegilops tauschii F775_12608 I 0.854
F775_11635 Aegilops tauschii F775_11635 I 0.878
F775_11133 Aegilops tauschii F775_11133 I 0.848
BRADI4G00920 Brachypodium distachyon BRADI4G00920 I 0.878
BRADI1G12770 Brachypodium distachyon BRADI1G12770 I 0.878
AMTR_s00033p00078670 Amborella trichopoda AMTR_s00033p00078670 I 0.849
OBART03G29020 Oryza barthii OBART03G29020 I 0.848
Si022171m.g Setaria italica Si022171m.g I 0.848
POPTR_0009s08500 Populus trichocarpa POPTR_0009s08500 I 0.849
POPTR_0007s14480 Populus trichocarpa POPTR_0007s14480 I 0.860
POPTR_0005s09810 Populus trichocarpa POPTR_0005s09810 I 0.849
POPTR_0001s29400 Populus trichocarpa POPTR_0001s29400 I 0.849
PGSC0003DMG400005101 Solanum tuberosum PGSC0003DMG400005101 I 0.851
OS12G0632600 Oryza sativa OS12G0632600 I 0.878
OS03G0725800 Oryza sativa OS03G0725800 I 0.849
OS03G0671800 Oryza sativa OS03G0671800 I 0.847
ORUFI12G22050 Oryza rufipogon ORUFI12G22050 I 0.878
PRUPE_ppa008130mg Prunus persica PRUPE_ppa008130mg I 0.849
PRUPE_ppa017640mg Prunus persica PRUPE_ppa017640mg I 0.849
Sb01g009590 Sorghum bicolor Sb01g009590 I 0.849
Si011972m.g Setaria italica Si011972m.g I 0.878
Si011709m.g Setaria italica Si011709m.g I 0.854
SELMODRAFT_48361 Selaginella moellendorffii SELMODRAFT_48361 I 0.849
SELMODRAFT_34848 Selaginella moellendorffii SELMODRAFT_34848 I 0.849
Sb08g022760 Sorghum bicolor Sb08g022760 I 0.878
Sb06g017460 Sorghum bicolor Sb06g017460 I 0.878
Sb01g012280 Sorghum bicolor Sb01g012280 I 0.878
Sb01g012260 Sorghum bicolor Sb01g012260 I 0.878
Sb01g012250 Sorghum bicolor Sb01g012250 I 0.848
ORUFI03G33950 Oryza rufipogon ORUFI03G33950 I 0.849
ORUFI03G30180 Oryza rufipogon ORUFI03G30180 I 0.848
OMERI03G29350 Oryza meridionalis OMERI03G29350 I 0.849
OMERI03G25360 Oryza meridionalis OMERI03G25360 I 0.878
OLONG_017178 Oryza longistaminata OLONG_017178 I 0.878
OLONG_002504 Oryza longistaminata OLONG_002504 I 0.878
OGLUM12G21470 Oryza glumaepatula OGLUM12G21470 I 0.878
OGLUM03G32210 Oryza glumaepatula OGLUM03G32210 I 0.849
OGLUM03G29270 Oryza glumaepatula OGLUM03G29270 I 0.878
OGLUM03G29200 Oryza glumaepatula OGLUM03G29200 I 0.848
OBART12G19700 Oryza barthii OBART12G19700 I 0.878
OMERI12G15000 Oryza meridionalis OMERI12G15000 I 0.878
ONIVA03G07570 Oryza nivara ONIVA03G07570 I 0.878
ONIVA03G30250 Oryza nivara ONIVA03G30250 I 0.848
ORGLA12G0170500 Oryza glaberrima ORGLA12G0170500 I 0.878
ORGLA03G0295100 Oryza glaberrima ORGLA03G0295100 I 0.849
ORGLA03G0269200 Oryza glaberrima ORGLA03G0269200 I 0.878
ORGLA03G0268800 Oryza glaberrima ORGLA03G0268800 I 0.848
OPUNC12G17950 Oryza punctata OPUNC12G17950 I 0.878
OPUNC03G29750 Oryza punctata OPUNC03G29750 I 0.849
OPUNC03G26600 Oryza punctata OPUNC03G26600 I 0.878
OPUNC03G26580 Oryza punctata OPUNC03G26580 I 0.848
ONIVA03G34090 Oryza nivara ONIVA03G34090 I 0.849
OBART03G32580 Oryza barthii OBART03G32580 I 0.849