Pavir.Ib04190 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.Ib04190 T050849_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT2G22750
M06730_2.00
Arabidopsis thaliana
MRYGTKDNHCACGTGNN

NNCACGTGDNHMACRYK
Dap-seq
OMalley et al.(2016)
bHLH18_col_a
0.875 0.694
OS01G0235700
M09894_2.00
Oryza sativa Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
P$BHLH66_01
0.843 0.531
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ib04190.1.p bHLH 118 166
Pavir.Ib04190.2.p bHLH 118 166

Links

Other bHLH family TFs
Other Panicum virgatum TFs

359 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
AALB006874 Anopheles albimanus AALB006874 N 0.000
ACEP26305 Atta cephalotes ACEP26305 N 0.000
AEPI010431 Anopheles epiroticus AEPI010431 N 0.000
Alligator_sinensis_CCG004399.1 Alligator sinensis Alligator_sinensis_CCG004399.1 N 0.000
ANCCAN_12999 Ancylostoma caninum ANCCAN_12999 I 0.000
ANCCAN_27245 Ancylostoma caninum ANCCAN_27245 N 0.000
ANCCEY_04348 Ancylostoma ceylanicum ANCCEY_04348 N 0.000
ANCCEY_11895 Ancylostoma ceylanicum ANCCEY_11895 N 0.000
ASIS015315 Anopheles sinensis ASIS015315 N 0.000
CBG15039 Caenorhabditis briggsae CBG15039 N 0.000
CGI_10007832 Crassostrea gigas CGI_10007832 N 0.000
CJA11256 Caenorhabditis japonica CJA11256 N 0.000
CLEC006124 Cimex lectularius CLEC006124 N 0.000
Cmyd_10017639 Chelonia mydas Cmyd_10017639 I 0.000
DICVIV_07766 Dictyocaulus viviparus DICVIV_07766 I 0.000
DMBX1 Monodelphis domestica ENSMODG00000001963 N 0.000
DPRX Choloepus hoffmanni ENSCHOG00000010851 N 0.000
EFV55958 Trichinella spiralis EFV55958 N 0.000
ENSCJAG00000011381 Callithrix jacchus ENSCJAG00000011381 N 0.000
ENSCSAG00000003788 Chlorocebus sabaeus ENSCSAG00000003788 N 0.000
ENSCSAG00000014537 Chlorocebus sabaeus ENSCSAG00000014537 I 0.000
ENSLAFG00000000420 Loxodonta africana ENSLAFG00000000420 N 0.000
ENSOARG00000006291 Ovis aries ENSOARG00000006291 N 0.000
ENSPANG00000010570 Papio anubis ENSPANG00000010570 N 0.000
ENSPVAG00000005359 Pteropus vampyrus ENSPVAG00000005359 N 0.000
ENSSSCG00000002985 Sus scrofa ENSSSCG00000002985 N 0.000
ENSSTOG00000026735 Ictidomys tridecemlineatus ENSSTOG00000026735 N 0.000
ENSTTRG00000007283 Tursiops truncatus ENSTTRG00000007283 N 0.000
GB50469 Apis mellifera GB50469 N 0.000
GK22279 Drosophila willistoni FBgn0224264 N 0.000
GPLIN_000181000 Globodera pallida GPLIN_000181000 N 0.000
Hba_17538 Heterorhabditis bacteriophora Hba_17538 N 0.000
HCOI01119200 Haemonchus contortus HCOI01119200 I 0.000
HCOI01577000 Haemonchus contortus HCOI01577000 I 0.000
HMEL015659 Heliconius melpomene HMEL015659 I 0.000
HPBE_0000469001 Heligmosomoides bakeri HPBE_0000469001 I 0.000
Hsal_07660--XP_394161.1_APIME Harpegnathos saltator Hsal_07660--XP_394161.1_APIME I 0.000
ISCW006446 Ixodes scapularis ISCW006446 N 0.000
L892_g17481 Steinernema scapterisci L892_g17481 I 0.000
L893_g2688 Steinernema glaseri L893_g2688 I 0.000
L898_g34060 Steinernema monticolum L898_g34060 I 0.000
LDEC016519 Leptinotarsa decemlineata LDEC016519 N 0.000
LDEC023625 Leptinotarsa decemlineata LDEC023625 N 0.000
LEUTX Canis familiaris ENSCAFG00000028552 N 0.000
LEUTX Homo sapiens ENSG00000213921 N 0.000
LEUTX Pan troglodytes ENSPTRG00000033892 N 0.000
LEUTX Bos taurus ENSBTAG00000046425 N 0.000
LEUTX Felis catus ENSFCAG00000023272 N 0.000
NEMVEDRAFT_v1g48861 Nematostella vectensis NEMVEDRAFT_v1g48861 N 0.000
Ocbimv22035611m.g Octopus bimaculoides Ocbimv22035611m.g I 0.000
OTX2 Choloepus hoffmanni ENSCHOG00000013827 I 0.000
OTX2 Myotis lucifugus ENSMLUG00000022591 I 0.000
Otx2 Mus musculus ENSMUSG00000021848 D 0.000
pitx1 Gasterosteus aculeatus ENSGACG00000016483 I 0.000
Sjc_0128760 Schistosoma japonicum Sjc_0128760 N 0.000
SMTD_0001972301 Schistosoma mattheei SMTD_0001972301 N 0.000
snap_masked-nMf.1.1.scaf16485-processed-gene-0.2 Meloidogyne floridensis snap_masked-nMf.1.1.scaf16485-processed-gene-0.2 N 0.000
snap_masked-nMf.1.1.scaf19847-processed-gene-0.1 Meloidogyne floridensis snap_masked-nMf.1.1.scaf19847-processed-gene-0.1 N 0.000
TELCIR_18721 Teladorsagia circumcincta TELCIR_18721 N 0.000
TPRX1 Homo sapiens ENSG00000178928 I 0.000
Traes_3AS_348CA06D5 Triticum aestivum Traes_3AS_348CA06D5 N 0.000
TTRE_0000079401 Trichuris trichiura TTRE_0000079401 N 0.000
unc-30 Caenorhabditis elegans WBGene00006766 I 0.000
WUBG_02192 Wuchereria bancrofti WUBG_02192 N 0.000
WUBG_02624 Wuchereria bancrofti WUBG_02624 N 0.000
XP_002164986.1 Hydra magnipapillata XP_002164986.1 N 0.000
YQE_12574 Dendroctonus ponderosae YQE_12574 N 0.000