CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pavir.J21430
(
Panicum virgatum
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Pavir.J21430
T050905_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pavir.J21430.1.p
bHLH
211
256
QTVAARLRRERVSERLRVLQRLVPGGSRMDTASMLDEAASYLKFLK
Links
Other
bHLH
family TFs
Other
Panicum virgatum
TFs
314 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
28179.m000478
Ricinus communis
28179.m000478
I
0.000
28179.m000479
Ricinus communis
28179.m000479
I
0.000
29804.m001498
Ricinus communis
29804.m001498
I
0.000
AMTR_s00033p00078670
Amborella trichopoda
AMTR_s00033p00078670
I
0.000
Aquca_010_00012
Aquilegia coerulea
Aquca_010_00012
I
0.000
AT2G22750
Arabidopsis thaliana
AT2G22750
D
0.000
BGIOSGA010080
Oryza indica
BGIOSGA010080
I
0.000
BGIOSGA013493
Oryza indica
BGIOSGA013493
I
0.000
BGIOSGA037855
Oryza indica
BGIOSGA037855
I
0.000
Bo4g150960
Brassica oleracea
Bo4g150960
I
0.000
Bra030210
Brassica rapa
Bra030210
I
0.000
Bra039924
Brassica rapa
Bra039924
I
0.000
BRADI1G10170
Brachypodium distachyon
BRADI1G10170
I
0.000
BRADI1G12770
Brachypodium distachyon
BRADI1G12770
I
0.000
BRADI4G00920
Brachypodium distachyon
BRADI4G00920
I
0.000
Cagra.5392s0006
Capsella grandiflora
Cagra.5392s0006
I
0.000
Carubv10025041m.g
Capsella rubella
Carubv10025041m.g
I
0.000
cassava16019.m1
Manihot esculenta
cassava16019.m1
I
0.000
cassava18197.valid.m1
Manihot esculenta
cassava18197.valid.m1
I
0.000
cassava20178.m1
Manihot esculenta
cassava20178.m1
I
0.000
cassava35671.valid.m1
Manihot esculenta
cassava35671.valid.m1
I
0.000
cassava37087.valid.m1
Manihot esculenta
cassava37087.valid.m1
I
0.000
Ca_05320
Cicer arietinum
Ca_05320
I
0.000
chr2.CM0021.410.nc
Lotus japonicus
chr2.CM0021.410.nc
I
0.000
chr2.CM0021.440.nc
Lotus japonicus
chr2.CM0021.440.nc
I
0.000
Ciclev10027158m.g
Citrus clementina
Ciclev10027158m.g
I
0.000
Ciclev10028925m.g
Citrus clementina
Ciclev10028925m.g
I
0.000
Cla000123
Citrullus lanatus
Cla000123
I
0.000
Cucsa.218800
Cucumis sativus
Cucsa.218800
I
0.000
estExt_fgenesh1_pg.C_310143
Physcomitrella patens
estExt_fgenesh1_pg.C_310143
I
0.000
estExt_fgenesh1_pg.C_420092
Physcomitrella patens
estExt_fgenesh1_pg.C_420092
I
0.000
Eucgr.H02389
Eucalyptus grandis
Eucgr.H02389
I
0.000
Eucgr.H02390
Eucalyptus grandis
Eucgr.H02390
I
0.000
Eucgr.I00634
Eucalyptus grandis
Eucgr.I00634
I
0.000
Eucgr.I02518
Eucalyptus grandis
Eucgr.I02518
I
0.000
evm.TU.supercontig_129.37
Carica papaya
evm.TU.supercontig_129.37
I
0.000
evm.TU.supercontig_20.63
Carica papaya
evm.TU.supercontig_20.63
I
0.000
F775_11371
Aegilops tauschii
F775_11371
I
0.000
F775_11635
Aegilops tauschii
F775_11635
I
0.000
fgenesh2_kg.4__196__AT2G22750.1
Arabidopsis lyrata
fgenesh2_kg.4__196__AT2G22750.1
I
0.000
gene05610-v1.0-hybrid
Fragaria vesca
gene05610-v1.0-hybrid
I
0.000
gene05612-v1.0-hybrid
Fragaria vesca
gene05612-v1.0-hybrid
I
0.000
GLYMA05G23291
Glycine max
GLYMA05G23291
I
0.000
GLYMA05G23530
Glycine max
GLYMA05G23530
I
0.000
GLYMA11G04690
Glycine max
GLYMA11G04690
I
0.000
GLYMA17G16720
Glycine max
GLYMA17G16720
I
0.000
GLYMA17G16741
Glycine max
GLYMA17G16741
I
0.000
Gorai.002G211500
Gossypium raimondii
Gorai.002G211500
I
0.000
Gorai.003G034700
Gossypium raimondii
Gorai.003G034700
I
0.000
Gorai.007G228900
Gossypium raimondii
Gorai.007G228900
I
0.000
Gorai.012G161900
Gossypium raimondii
Gorai.012G161900
I
0.000
GRMZM2G019806
Zea mays
GRMZM2G019806
I
0.000
GRMZM2G036554
Zea mays
GRMZM2G036554
I
0.000
GRMZM2G049686
Zea mays
GRMZM2G049686
I
0.000
GRMZM2G068604
Zea mays
GRMZM2G068604
I
0.000
GRMZM2G082343
Zea mays
GRMZM2G082343
I
0.000
GRMZM2G120021
Zea mays
GRMZM2G120021
I
0.000
GRMZM2G155043
Zea mays
GRMZM2G155043
I
0.000
GRMZM2G355469
Zea mays
GRMZM2G355469
I
0.000
GSMUA_Achr2G08590_001
Musa acuminata
GSMUA_Achr2G08590_001
I
0.000
GSMUA_Achr3G26180_001
Musa acuminata
GSMUA_Achr3G26180_001
I
0.000
GSMUA_Achr4G03160_001
Musa acuminata
GSMUA_Achr4G03160_001
I
0.000
GSMUA_Achr7G27600_001
Musa acuminata
GSMUA_Achr7G27600_001
I
0.000
GSMUA_AchrUn_randomG15440_001
Musa acuminata
GSMUA_AchrUn_randomG15440_001
I
0.000
LjT17L12.80.nd
Lotus japonicus
LjT17L12.80.nd
I
0.000
LPERR03G24050
Leersia perrieri
LPERR03G24050
I
0.000
LPERR03G27220
Leersia perrieri
LPERR03G27220
I
0.000
LPERR12G16560
Leersia perrieri
LPERR12G16560
I
0.000
Lus10003488.g
Linum usitatissimum
Lus10003488.g
I
0.000
Lus10012457.g
Linum usitatissimum
Lus10012457.g
I
0.000
Lus10020503.g
Linum usitatissimum
Lus10020503.g
I
0.000
Lus10039639.g
Linum usitatissimum
Lus10039639.g
I
0.000
MDP0000159571
Malus domestica
MDP0000159571
I
0.000
MDP0000170202
Malus domestica
MDP0000170202
I
0.000
MDP0000174149
Malus domestica
MDP0000174149
I
0.000
MDP0000291132
Malus domestica
MDP0000291132
I
0.000
MDP0000318216
Malus domestica
MDP0000318216
I
0.000
MDP0000502440
Malus domestica
MDP0000502440
I
0.000
MLOC_42946
Hordeum vulgare
MLOC_42946
I
0.000
MLOC_64735
Hordeum vulgare
MLOC_64735
I
0.000
MTR_4g097920
Medicago truncatula
MTR_4g097920
I
0.000
MTR_4g097940
Medicago truncatula
MTR_4g097940
I
0.000
OB03G36530
Oryza brachyantha
OB03G36530
I
0.000
OBART03G32580
Oryza barthii
OBART03G32580
I
0.000
OBART12G19700
Oryza barthii
OBART12G19700
I
0.000
OGLUM03G29270
Oryza glumaepatula
OGLUM03G29270
I
0.000
OGLUM03G32210
Oryza glumaepatula
OGLUM03G32210
I
0.000
OGLUM12G21470
Oryza glumaepatula
OGLUM12G21470
I
0.000
OLONG_002504
Oryza longistaminata
OLONG_002504
I
0.000
OLONG_017178
Oryza longistaminata
OLONG_017178
I
0.000
OMERI03G25360
Oryza meridionalis
OMERI03G25360
I
0.000
OMERI03G29350
Oryza meridionalis
OMERI03G29350
I
0.000
OMERI12G15000
Oryza meridionalis
OMERI12G15000
I
0.000
ONIVA03G07570
Oryza nivara
ONIVA03G07570
I
0.000
ONIVA03G34090
Oryza nivara
ONIVA03G34090
I
0.000
OPUNC03G26600
Oryza punctata
OPUNC03G26600
I
0.000
OPUNC03G29750
Oryza punctata
OPUNC03G29750
I
0.000
OPUNC12G17950
Oryza punctata
OPUNC12G17950
I
0.000
orange1.1g021208m.g
Citrus sinensis
orange1.1g021208m.g
I
0.000
orange1.1g037441m.g
Citrus sinensis
orange1.1g037441m.g
I
0.000
ORGLA03G0269200
Oryza glaberrima
ORGLA03G0269200
I
0.000
ORGLA03G0295100
Oryza glaberrima
ORGLA03G0295100
I
0.000
ORGLA12G0170500
Oryza glaberrima
ORGLA12G0170500
I
0.000
ORUFI03G33950
Oryza rufipogon
ORUFI03G33950
I
0.000
ORUFI12G22050
Oryza rufipogon
ORUFI12G22050
I
0.000
OS03G0725800
Oryza sativa
OS03G0725800
I
0.000
OS12G0632600
Oryza sativa
OS12G0632600
I
0.000
Pavir.Ia01004
Panicum virgatum
Pavir.Ia01004
I
0.000
Pavir.Ia01038
Panicum virgatum
Pavir.Ia01038
I
0.000
Pavir.Ia01059
Panicum virgatum
Pavir.Ia01059
I
0.000
Pavir.Ib04096
Panicum virgatum
Pavir.Ib04096
I
0.000
Pavir.Ib04188
Panicum virgatum
Pavir.Ib04188
I
0.000
Pavir.Ib04190
Panicum virgatum
Pavir.Ib04190
I
0.000
Pavir.J01849
Panicum virgatum
Pavir.J01849
I
0.000
Pavir.J26871
Panicum virgatum
Pavir.J26871
I
0.000
Pavir.J30022
Panicum virgatum
Pavir.J30022
I
0.000
Pavir.J35103
Panicum virgatum
Pavir.J35103
I
0.000
PDK_20s1394471g002
Phoenix dactylifera
PDK_20s1394471g002
I
0.000
PGSC0003DMG400005101
Solanum tuberosum
PGSC0003DMG400005101
I
0.000
PGSC0003DMG400005525
Solanum tuberosum
PGSC0003DMG400005525
I
0.000
PGSC0003DMG401010822
Solanum tuberosum
PGSC0003DMG401010822
I
0.000
PK09122.1
Cannabis sativa
PK09122.1
I
0.000
PK11573.1
Cannabis sativa
PK11573.1
I
0.000
Pm002304
Prunus mume
Pm002304
I
0.000
Pm002305
Prunus mume
Pm002305
I
0.000
Pm021008
Prunus mume
Pm021008
I
0.000
POPTR_0001s29400
Populus trichocarpa
POPTR_0001s29400
I
0.000
POPTR_0005s09810
Populus trichocarpa
POPTR_0005s09810
I
0.000
POPTR_0009s08500
Populus trichocarpa
POPTR_0009s08500
I
0.000
PRUPE_ppa007561mg
Prunus persica
PRUPE_ppa007561mg
I
0.000
PRUPE_ppa008130mg
Prunus persica
PRUPE_ppa008130mg
I
0.000
PRUPE_ppa017640mg
Prunus persica
PRUPE_ppa017640mg
I
0.000
SapurV1A.0019s0910
Salix purpurea
SapurV1A.0019s0910
I
0.000
SapurV1A.0279s0180
Salix purpurea
SapurV1A.0279s0180
I
0.000
SapurV1A.3034s0010
Salix purpurea
SapurV1A.3034s0010
I
0.000
Sb01g009590
Sorghum bicolor
Sb01g009590
I
0.000
Sb01g012260
Sorghum bicolor
Sb01g012260
I
0.000
Sb01g012280
Sorghum bicolor
Sb01g012280
I
0.000
Sb06g017460
Sorghum bicolor
Sb06g017460
I
0.000
Sb08g022760
Sorghum bicolor
Sb08g022760
I
0.000
SELMODRAFT_34848
Selaginella moellendorffii
SELMODRAFT_34848
I
0.000
SELMODRAFT_48361
Selaginella moellendorffii
SELMODRAFT_48361
I
0.000
Si011972m.g
Setaria italica
Si011972m.g
I
0.000
Si024086m.g
Setaria italica
Si024086m.g
I
0.000
Si036185m.g
Setaria italica
Si036185m.g
I
0.000
Si036393m.g
Setaria italica
Si036393m.g
I
0.000
Si038721m.g
Setaria italica
Si038721m.g
I
0.000
Si039325m.g
Setaria italica
Si039325m.g
I
0.000
Solyc01g106460.2
Solanum lycopersicum
Solyc01g106460.2
I
0.000
Solyc10g009270.2
Solanum lycopersicum
Solyc10g009270.2
I
0.000
TCM_000895
Theobroma cacao
TCM_000895
I
0.000
TCM_006357
Theobroma cacao
TCM_006357
I
0.000
Thhalv10000426m.g
Eutrema salsugineum
Thhalv10000426m.g
I
0.000
Traes_4AL_F3571097B
Triticum aestivum
Traes_4AL_F3571097B
I
0.000
Traes_4BS_34AF89ACE
Triticum aestivum
Traes_4BS_34AF89ACE
I
0.000
Traes_4DS_6A9EB40A4
Triticum aestivum
Traes_4DS_6A9EB40A4
I
0.000
Traes_4DS_7F3D9E4D9
Triticum aestivum
Traes_4DS_7F3D9E4D9
I
0.000
TRIUR3_05977
Triticum urartu
TRIUR3_05977
I
0.000
TRIUR3_26880
Triticum urartu
TRIUR3_26880
I
0.000
VIT_03s0088g01240
Vitis vinifera
VIT_03s0088g01240
I
0.000
VIT_07s0205g00160
Vitis vinifera
VIT_07s0205g00160
I
0.000