Pavir.J38910 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.J38910 T050948_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BIM1
M01710_2.00 		Arabidopsis thaliana
NCRCGTGNNN
NNNCACGYGN		 PBM
Weirauch et al.(2014)
pTH8114 		0.882 0.863
BIM1
M06739_2.00 		Arabidopsis thaliana
CACGTGAYNHNNNH
DNNNDNRTCACGTG		 Dap-seq
OMalley et al.(2016)
BIM1_col_a 		0.882 0.863
BIM1
M06740_2.00 		Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN
NNNDNDNDNDDRKCACGTGMBN		 Dap-seq
OMalley et al.(2016)
BIM1_colamp_a 		0.882 0.863
BIM1
M09787_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BIM1_01 		0.882 0.863
fgenesh1_pg.scaffold_37000071
M01757_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8584 		0.882 0.843
BIM2
M01701_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8089 		0.861 0.745
BIM2
M06727_2.00 		Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN
NNNNNNNNNNNVDCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_colamp 		0.861 0.745
BIM2
M06728_2.00 		Arabidopsis thaliana
CACGTGMBNNNCVYV
BRBGNNNVKCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_col_v3b 		0.861 0.745
BIM3
M01711_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8591 		0.838 0.843
BIM3
M06741_2.00 		Arabidopsis thaliana
DYGTSHNNVKCACGTGMY
RKCACGTGMBNNDSACRH		 Dap-seq
OMalley et al.(2016)
BIM3_col_a 		0.838 0.843
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J38910.1.p bHLH 134 184
Pavir.J38910.2.p bHLH 56 106

Links

Other bHLH family TFs
Other Panicum virgatum TFs

174 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si013622m.g Setaria italica Si013622m.g I 0.914
Sb07g028860 Sorghum bicolor Sb07g028860 I 0.914
Pavir.Fb01833 Panicum virgatum Pavir.Fb01833 I 0.914
Aquca_002_00952 Aquilegia coerulea Aquca_002_00952 I 0.912
SapurV1A.0274s0040 Salix purpurea SapurV1A.0274s0040 I 0.892
Lus10026684.g Linum usitatissimum Lus10026684.g I 0.892
29790.m000843 Ricinus communis 29790.m000843 I 0.892
Eucgr.I02069 Eucalyptus grandis Eucgr.I02069 I 0.892
Lus10004630.g Linum usitatissimum Lus10004630.g I 0.892
MTR_5g048350 Medicago truncatula MTR_5g048350 I 0.892
Gorai.001G197500 Gossypium raimondii Gorai.001G197500 I 0.892
GLYMA18G51080 Glycine max GLYMA18G51080 I 0.892
GLYMA08G28010 Glycine max GLYMA08G28010 I 0.892
POPTR_0004s11180 Populus trichocarpa POPTR_0004s11180 I 0.892
cassava15.valid.m1 Manihot esculenta cassava15.valid.m1 I 0.892
Thhalv10027863m.g Eutrema salsugineum Thhalv10027863m.g I 0.892
POPTR_0017s13610 Populus trichocarpa POPTR_0017s13610 I 0.892
PK00238.1 Cannabis sativa PK00238.1 I 0.892
cassava14.valid.m1 Manihot esculenta cassava14.valid.m1 I 0.892
Ca_22043 Cicer arietinum Ca_22043 I 0.892
BIM3 Vitis vinifera VIT_14s0083g00930 I 0.892
Cucsa.174600 Cucumis sativus Cucsa.174600 I 0.892
TCM_019015 Theobroma cacao TCM_019015 I 0.892
SapurV1A.2517s0020 Salix purpurea SapurV1A.2517s0020 I 0.892
OB08G25940 Oryza brachyantha OB08G25940 I 0.884
ORUFI08G21030 Oryza rufipogon ORUFI08G21030 I 0.884
OS08G0490000 Oryza sativa OS08G0490000 I 0.884
OGLUM08G19830 Oryza glumaepatula OGLUM08G19830 I 0.884
SELMODRAFT_451475 Selaginella moellendorffii SELMODRAFT_451475 I 0.884
OPUNC08G16820 Oryza punctata OPUNC08G16820 I 0.884
ORGLA08G0164200 Oryza glaberrima ORGLA08G0164200 I 0.884
OLONG_003583 Oryza longistaminata OLONG_003583 I 0.884
SELMODRAFT_451477 Selaginella moellendorffii SELMODRAFT_451477 I 0.884
ONIVA08G20800 Oryza nivara ONIVA08G20800 I 0.884
BGIOSGA028888 Oryza indica BGIOSGA028888 I 0.884
BRADI3G38970 Brachypodium distachyon BRADI3G38970 I 0.884
Bo3g004690 Brassica oleracea Bo3g004690 I 0.882
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I 0.882
Bo5g020460 Brassica oleracea Bo5g020460 I 0.882
Bra029354 Brassica rapa Bra029354 I 0.882
SapurV1A.0868s0010 Salix purpurea SapurV1A.0868s0010 I 0.882
estExt_fgenesh1_pg.C_2110039 Physcomitrella patens estExt_fgenesh1_pg.C_2110039 I 0.882
Carubv10000655m.g Capsella rubella Carubv10000655m.g I 0.882
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I 0.882
Bra009322 Brassica rapa Bra009322 I 0.882
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I 0.882
mgf005849m Mimulus guttatus mgf005849m I 0.882
mgf001137m Mimulus guttatus mgf001137m I 0.882
gw1.90.123.1 Physcomitrella patens gw1.90.123.1 I 0.882
BIM1 Arabidopsis lyrata scaffold_600819.1 I 0.882
PRUPE_ppa003436mg Prunus persica PRUPE_ppa003436mg I 0.882
fgenesh1_pg.scaffold_37000071 Physcomitrella patens fgenesh1_pg.scaffold_37000071 D 0.882
POPTR_0015s03550 Populus trichocarpa POPTR_0015s03550 I 0.882
Bra005969 Brassica rapa Bra005969 I 0.882
SapurV1A.0178s0150 Salix purpurea SapurV1A.0178s0150 I 0.882
Ciclev10020248m.g Citrus clementina Ciclev10020248m.g I 0.882
cassava43379.valid.m1 Manihot esculenta cassava43379.valid.m1 I 0.882
Cucsa.113490 Cucumis sativus Cucsa.113490 I 0.882
TCM_014392 Theobroma cacao TCM_014392 I 0.882
cassava29318.valid.m1 Manihot esculenta cassava29318.valid.m1 I 0.882
MTR_4g110040 Medicago truncatula MTR_4g110040 I 0.882
PK10562.1 Cannabis sativa PK10562.1 I 0.882
BIM1 Vitis vinifera VIT_17s0000g04790 I 0.882
BIM1 Arabidopsis thaliana AT5G08130 D 0.882
orange1.1g038451m.g Citrus sinensis orange1.1g038451m.g I 0.882
evm.TU.supercontig_3.225 Carica papaya evm.TU.supercontig_3.225 I 0.882
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I 0.882
AMTR_s00006p00250310 Amborella trichopoda AMTR_s00006p00250310 I 0.882
Bo9g174770 Brassica oleracea Bo9g174770 I 0.882
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I 0.882
Solyc06g069370.2 Solanum lycopersicum Solyc06g069370.2 I 0.882
Bo2g161110 Brassica oleracea Bo2g161110 I 0.882
GLYMA05G07490 Glycine max GLYMA05G07490 I 0.882
Cla018818 Citrullus lanatus Cla018818 I 0.870
GLYMA17G08980 Glycine max GLYMA17G08980 I 0.870
Cucsa.198520 Cucumis sativus Cucsa.198520 I 0.870
POPTR_0012s06650 Populus trichocarpa POPTR_0012s06650 I 0.869
Gorai.006G269200 Gossypium raimondii Gorai.006G269200 I 0.869
GSMUA_Achr9G28050_001 Musa acuminata GSMUA_Achr9G28050_001 I 0.869
Lus10034358.g Linum usitatissimum Lus10034358.g I 0.868
orange1.1g019485m.g Citrus sinensis orange1.1g019485m.g I 0.868
Ciclev10012135m.g Citrus clementina Ciclev10012135m.g I 0.868
cassava29314.valid.m1 Manihot esculenta cassava29314.valid.m1 I 0.861
cassava43370.valid.m1 Manihot esculenta cassava43370.valid.m1 I 0.861
MDP0000261293 Malus domestica MDP0000261293 I 0.861
Gorai.007G040600 Gossypium raimondii Gorai.007G040600 I 0.861
30138.m003899 Ricinus communis 30138.m003899 I 0.861
Gorai.013G098000 Gossypium raimondii Gorai.013G098000 I 0.861
Gorai.009G327300 Gossypium raimondii Gorai.009G327300 I 0.861
orange1.1g019960m.g Citrus sinensis orange1.1g019960m.g I 0.861
PK01364.1 Cannabis sativa PK01364.1 I 0.861
gene04534-v1.0-hybrid Fragaria vesca gene04534-v1.0-hybrid I 0.861
Carubv10020679m.g Capsella rubella Carubv10020679m.g I 0.861
Cagra.1157s0023 Capsella grandiflora Cagra.1157s0023 I 0.861
Bostr.10273s0468 Boechera stricta Bostr.10273s0468 I 0.861
mgf013208m Mimulus guttatus mgf013208m I 0.861
Cucsa.328060 Cucumis sativus Cucsa.328060 I 0.861
Ciclev10032020m.g Citrus clementina Ciclev10032020m.g I 0.861
mgf011829m Mimulus guttatus mgf011829m I 0.861
Eucgr.B03113 Eucalyptus grandis Eucgr.B03113 I 0.861
SapurV1A.0060s0510 Salix purpurea SapurV1A.0060s0510 I 0.861
SapurV1A.0084s0570 Salix purpurea SapurV1A.0084s0570 I 0.861
Thhalv10018889m.g Eutrema salsugineum Thhalv10018889m.g I 0.861
Solyc04g005280.2 Solanum lycopersicum Solyc04g005280.2 I 0.861
GLYMA02G13670 Glycine max GLYMA02G13670 I 0.861
MTR_7g017320 Medicago truncatula MTR_7g017320 I 0.861
BIM2 Arabidopsis lyrata fgenesh2_kg.2__1159__AT1G69010.1 I 0.861
PGSC0003DMG400001919 Solanum tuberosum PGSC0003DMG400001919 I 0.861
PGSC0003DMG400019654 Solanum tuberosum PGSC0003DMG400019654 I 0.861
PRUPE_ppa008856mg Prunus persica PRUPE_ppa008856mg I 0.861
POPTR_0008s11120 Populus trichocarpa POPTR_0008s11120 I 0.861
POPTR_0010s14740 Populus trichocarpa POPTR_0010s14740 I 0.861
PRUPE_ppa008387mg Prunus persica PRUPE_ppa008387mg I 0.861
Solyc05g011810.2 Solanum lycopersicum Solyc05g011810.2 I 0.861
TCM_011433 Theobroma cacao TCM_011433 I 0.861
Cla022382 Citrullus lanatus Cla022382 I 0.861
BIM2 Vitis vinifera VIT_01s0010g00540 I 0.861
BIM2 Arabidopsis thaliana AT1G69010 D 0.861
Bo2g062560 Brassica oleracea Bo2g062560 I 0.861
Bo6g108530 Brassica oleracea Bo6g108530 I 0.861
Bra038332 Brassica rapa Bra038332 I 0.861
Bra004355 Brassica rapa Bra004355 I 0.861
LPERR08G15680 Leersia perrieri LPERR08G15680 I 0.860
GSMUA_Achr9G19110_001 Musa acuminata GSMUA_Achr9G19110_001 I 0.858
OBART09G13850 Oryza barthii OBART09G13850 I 0.858
OGLUM09G14430 Oryza glumaepatula OGLUM09G14430 I 0.858
GSMUA_Achr4G19530_001 Musa acuminata GSMUA_Achr4G19530_001 I 0.858
LPERR09G10080 Leersia perrieri LPERR09G10080 I 0.858
GRMZM2G009478 Zea mays GRMZM2G009478 I 0.858
BRADI4G32967 Brachypodium distachyon BRADI4G32967 I 0.858
BGIOSGA030958 Oryza indica BGIOSGA030958 I 0.858
F775_23096 Aegilops tauschii F775_23096 I 0.858
Pavir.J04606 Panicum virgatum Pavir.J04606 I 0.858
GRMZM2G089501 Zea mays GRMZM2G089501 I 0.858
OMERI09G10560 Oryza meridionalis OMERI09G10560 I 0.858
GSMUA_Achr2G05450_001 Musa acuminata GSMUA_Achr2G05450_001 I 0.858
OLONG_020060 Oryza longistaminata OLONG_020060 I 0.858
Sb02g027460 Sorghum bicolor Sb02g027460 I 0.858
ONIVA09G14370 Oryza nivara ONIVA09G14370 I 0.858
ORUFI09G14830 Oryza rufipogon ORUFI09G14830 I 0.858
Si029604m.g Setaria italica Si029604m.g I 0.858
Traes_5AL_0D4BDDDCD Triticum aestivum Traes_5AL_0D4BDDDCD I 0.858
Traes_5DL_E96693018 Triticum aestivum Traes_5DL_E96693018 I 0.858
Traes_5BL_AAC9C7238 Triticum aestivum Traes_5BL_AAC9C7238 I 0.858
30138.m003913 Ricinus communis 30138.m003913 I 0.858
OS09G0475400 Oryza sativa OS09G0475400 I 0.858
ORGLA09G0105800 Oryza glaberrima ORGLA09G0105800 I 0.858
OPUNC09G12310 Oryza punctata OPUNC09G12310 I 0.858
ORGLA06G0286200 Oryza glaberrima ORGLA06G0286200 I 0.858
GLYMA01G09010 Glycine max GLYMA01G09010 I 0.850
evm.TU.supercontig_289.6 Carica papaya evm.TU.supercontig_289.6 I 0.849
Sb04g029270 Sorghum bicolor Sb04g029270 I 0.848
Si016505m.g Setaria italica Si016505m.g I 0.848
ORGLA02G0264700 Oryza glaberrima ORGLA02G0264700 I 0.848
Traes_6BL_DA93728B3 Triticum aestivum Traes_6BL_DA93728B3 I 0.848
BRADI3G56340 Brachypodium distachyon BRADI3G56340 I 0.848
Pavir.Ab03017 Panicum virgatum Pavir.Ab03017 I 0.848
Pavir.Aa00700 Panicum virgatum Pavir.Aa00700 I 0.848
OS02G0726700 Oryza sativa OS02G0726700 I 0.848
BGIOSGA005697 Oryza indica BGIOSGA005697 I 0.848
MLOC_62335 Hordeum vulgare MLOC_62335 I 0.848
Traes_6DL_D38F3257B Triticum aestivum Traes_6DL_D38F3257B I 0.848
GRMZM2G317450 Zea mays GRMZM2G317450 I 0.848
OB02G38020 Oryza brachyantha OB02G38020 I 0.848
Lus10007974.g Linum usitatissimum Lus10007974.g I 0.846
Lus10013502.g Linum usitatissimum Lus10013502.g I 0.846
GSMUA_Achr3G10640_001 Musa acuminata GSMUA_Achr3G10640_001 I 0.846
Traes_7DL_04FC0BF21 Triticum aestivum Traes_7DL_04FC0BF21 N 0.841
Aquca_006_00387 Aquilegia coerulea Aquca_006_00387 I 0.840
Carubv10006445m.g Capsella rubella Carubv10006445m.g I 0.838
BIM3 Arabidopsis thaliana AT5G38860 D 0.838
Cagra.2539s0002 Capsella grandiflora Cagra.2539s0002 I 0.838
BIM3 Arabidopsis lyrata scaffold_704174.1 I 0.838