LCUP012274 (Lucilia cuprina)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 LCUP012274 T051475_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
HLH4C
M03609_2.00
Drosophila melanogaster
DDNCRCAGCTGYGNHH

DDNCRCAGCTGYGNHH
SELEX
Nitta et al.(2015)
HLH4C_1
0.914 1.000
HLH4C
M03610_2.00
Drosophila melanogaster
DRSMYCAGCTGVKSYH

DRSMBCAGCTGRKSYH
SELEX
Nitta et al.(2015)
HLH4C_2
0.914 1.000
HLH4C
M03611_2.00
Drosophila melanogaster
NRBMYCAGCTGYGNHH

DDNCRCAGCTGRKVYN
SELEX
Nitta et al.(2015)
HLH4C_3
0.914 1.000
HLH4C
M05963_2.00
Drosophila melanogaster
CACCTGMDCC

GGHKCAGGTG
B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_3_FBgn0011277
0.914 1.000
HLH4C
M05964_2.00
Drosophila melanogaster
MCAYCTGMGMMM

KKKCKCAGRTGK
B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_4_FBgn0011277
0.914 1.000
HLH4C
M05965_2.00
Drosophila melanogaster
VNHHVCACCTGMBNC

GNVKCAGGTGBDDNB
B1H
Zhu et al.(2011)
HLH4C_da_SANGER_5_FBgn0011277
0.914 1.000
HLH4C
M05966_2.00
Drosophila melanogaster
RGSMYCAGCTGCGYY

RRCGCAGCTGRKSCY
B1H
Zhu et al.(2011)
HLH4C_SANGER_5_FBgn0011277
0.914 1.000
NHLH1
M02796_2.00
Homo sapiens
CGCAGCTGCB

VGCAGCTGCG
SELEX
Jolma et al.(2013)
NHLH1_1
0.891 0.923
NHLH1
M02797_2.00
Homo sapiens
VGCAGCTGCK

MGCAGCTGCB
SELEX
Jolma et al.(2013)
NHLH1_2
0.891 0.923
NHLH1
M04162_2.00
Homo sapiens
NDGNMKCAGCTGCGYCMH

DKGRCGCAGCTGMKNCHN
SELEX
Yin et al.(2017)
NHLH1_eDBD_HT-SELEX
0.891 0.923
NHLH1
M04164_2.00
Homo sapiens
NDGNMKCAGCTGCGYCMH

DKGRCGCAGCTGMKNCHN
SELEX
Yin et al.(2017)
NHLH1_FL_HT-SELEX
0.891 0.923
Nhlh1
M08773_2.00
Mus musculus
BKGGNMNCAGCTGCGBCCYY

RRGGVCGCAGCTGNKNCCMV
Misc
Kulakovskiy et al.(2013)
HEN1_MOUSE.H11MO.0.C
0.891 0.923
NHLH1
M09875_2.00
Homo sapiens
NNDGGNMVCAGCTGVGNCCNNN

NNNGGNCBCAGCTGBKNCCHNN
Transfac
Matys et al.(2006)
V$HEN1_01
0.891 0.923
NHLH1
M09876_2.00
Homo sapiens
NDRGGVMGCAGCTGMKNCCHHN

NDDGGNMKCAGCTGCKBCCYHN
Transfac
Matys et al.(2006)
V$HEN1_02
0.891 0.923
NHLH1
M04163_2.00
Homo sapiens
NRGBMKCAGCTGCGYCCH

DGGRCGCAGCTGMKVCYN
SELEX
Yin et al.(2017)
NHLH1_eDBD_Methyl-HT-SELEX
0.891 0.923
NHLH1
M04165_2.00
Homo sapiens
DGGNMBCAGCTGCGYCCH

DGGRCGCAGCTGVKNCCH
SELEX
Yin et al.(2017)
NHLH1_FL_Methyl-HT-SELEX
0.891 0.923
Nhlh2
M00756_2.00
Mus musculus
NKCAGCTGHN

NDCAGCTGMN
PBM
Weirauch et al.(2013)
pTH3037
0.891 0.904
NHLH2
M04177_2.00
Homo sapiens
DDGNMGCAGCTGCGYCMH

DKGRCGCAGCTGCKNCHH
SELEX
Yin et al.(2017)
NHLH2_FL_HT-SELEX
0.891 0.904
NHLH2
M09878_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$HEN2_Q2
0.891 0.904
NHLH2
M04178_2.00
Homo sapiens
DGGNMBCAGCTGCGYCCH

DGGRCGCAGCTGVKNCCH
SELEX
Yin et al.(2017)
NHLH2_FL_Methyl-HT-SELEX
0.891 0.904
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LCUP012274-PA bHLH 128 180

Links

Other bHLH family TFs
Other Lucilia cuprina TFs

167 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GRMZM2G038252 Zea mays GRMZM2G038252 D 0.000
WOX13 Arabidopsis thaliana AT4G35550 D 0.000
Aquca_015_00333 Aquilegia coerulea Aquca_015_00333 I 0.000
Aquca_007_00901 Aquilegia coerulea Aquca_007_00901 I 0.000
mgf006573m Mimulus guttatus mgf006573m I 0.000
gw1.29.10.1 Physcomitrella patens gw1.29.10.1 I 0.000
gw1.224.39.1 Physcomitrella patens gw1.224.39.1 I 0.000
fgenesh1_pg.scaffold_217000007 Physcomitrella patens fgenesh1_pg.scaffold_217000007 I 0.000
estExt_fgenesh1_pg.C_90244 Micromonas pusilla estExt_fgenesh1_pg.C_90244 I 0.000
TRAES3BF091200100CFD_g Triticum aestivum TRAES3BF091200100CFD_g I 0.000
Bostr.19424s1059 Boechera stricta Bostr.19424s1059 I 0.000
Bostr.3717s0001 Boechera stricta Bostr.3717s0001 I 0.000
Bostr.7128s0661 Boechera stricta Bostr.7128s0661 I 0.000
Bostr.7867s1413 Boechera stricta Bostr.7867s1413 I 0.000
Cagra.1655s0045 Capsella grandiflora Cagra.1655s0045 I 0.000
Cagra.2350s0096 Capsella grandiflora Cagra.2350s0096 I 0.000
Cagra.6160s0025 Capsella grandiflora Cagra.6160s0025 I 0.000
Cagra.6160s0026 Capsella grandiflora Cagra.6160s0026 I 0.000
Carubv10005217m.g Capsella rubella Carubv10005217m.g I 0.000
Cucsa.323040 Cucumis sativus Cucsa.323040 I 0.000
Cucsa.272210 Cucumis sativus Cucsa.272210 I 0.000
cassava39214.m1 Manihot esculenta cassava39214.m1 I 0.000
Traes_3DL_6B1815F7D Triticum aestivum Traes_3DL_6B1815F7D I 0.000
Traes_3DS_97BBFFA03 Triticum aestivum Traes_3DS_97BBFFA03 I 0.000
TRIUR3_23636 Triticum urartu TRIUR3_23636 I 0.000
VIT_04s0044g00150 Vitis vinifera VIT_04s0044g00150 I 0.000
VIT_04s0044g00160 Vitis vinifera VIT_04s0044g00160 I 0.000
VIT_18s0122g01140 Vitis vinifera VIT_18s0122g01140 I 0.000
Ca_04823 Cicer arietinum Ca_04823 I 0.000
Ca_18623 Cicer arietinum Ca_18623 I 0.000
Ca_19383 Cicer arietinum Ca_19383 I 0.000
Ca_19386 Cicer arietinum Ca_19386 I 0.000
Cla009089 Citrullus lanatus Cla009089 I 0.000
Cla023819 Citrullus lanatus Cla023819 I 0.000
Pm022951 Prunus mume Pm022951 I 0.000
Pm026793 Prunus mume Pm026793 I 0.000
29830.m001452 Ricinus communis 29830.m001452 I 0.000
30170.m014389 Ricinus communis 30170.m014389 I 0.000
cassava23423.valid.m1 Manihot esculenta cassava23423.valid.m1 I 0.000
Carubv10010349m.g Capsella rubella Carubv10010349m.g I 0.000
Carubv10012447m.g Capsella rubella Carubv10012447m.g I 0.000
Carubv10016169m.g Capsella rubella Carubv10016169m.g I 0.000
orange1.1g026809m.g Citrus sinensis orange1.1g026809m.g I 0.000
Pavir.Ea03245 Panicum virgatum Pavir.Ea03245 I 0.000
Pavir.Eb03552 Panicum virgatum Pavir.Eb03552 I 0.000
SapurV1A.0016s0590 Salix purpurea SapurV1A.0016s0590 I 0.000
SapurV1A.0266s0300 Salix purpurea SapurV1A.0266s0300 I 0.000
SapurV1A.0351s0200 Salix purpurea SapurV1A.0351s0200 I 0.000
SapurV1A.1240s0080 Salix purpurea SapurV1A.1240s0080 I 0.000
SapurV1A.2168s0010 Salix purpurea SapurV1A.2168s0010 I 0.000
Thhalv10008824m.g Eutrema salsugineum Thhalv10008824m.g I 0.000
Thhalv10009917m.g Eutrema salsugineum Thhalv10009917m.g I 0.000
Thhalv10022017m.g Eutrema salsugineum Thhalv10022017m.g I 0.000
Thhalv10025989m.g Eutrema salsugineum Thhalv10025989m.g I 0.000
PK07880.1 Cannabis sativa PK07880.1 I 0.000
PK14252.1 Cannabis sativa PK14252.1 I 0.000
chr1.CM0113.620.nc Lotus japonicus chr1.CM0113.620.nc I 0.000
chr5.CM0180.70.nc Lotus japonicus chr5.CM0180.70.nc I 0.000
LjT41B11.90.nd Lotus japonicus LjT41B11.90.nd I 0.000
orange1.1g022516m.g Citrus sinensis orange1.1g022516m.g I 0.000
MDP0000851699 Malus domestica MDP0000851699 I 0.000
Ciclev10002354m.g Citrus clementina Ciclev10002354m.g I 0.000
Ciclev10026199m.g Citrus clementina Ciclev10026199m.g I 0.000
Eucgr.I02222 Eucalyptus grandis Eucgr.I02222 I 0.000
evm.TU.supercontig_26.173 Carica papaya evm.TU.supercontig_26.173 I 0.000
evm.TU.supercontig_6.368 Carica papaya evm.TU.supercontig_6.368 I 0.000
gene13035-v1.0-hybrid Fragaria vesca gene13035-v1.0-hybrid I 0.000
gene20491-v1.0-hybrid Fragaria vesca gene20491-v1.0-hybrid I 0.000
Gorai.001G199200 Gossypium raimondii Gorai.001G199200 I 0.000
Gorai.003G002200 Gossypium raimondii Gorai.003G002200 I 0.000
Gorai.004G038300 Gossypium raimondii Gorai.004G038300 I 0.000
Gorai.007G372000 Gossypium raimondii Gorai.007G372000 I 0.000
Lus10016026.g Linum usitatissimum Lus10016026.g I 0.000
Lus10023561.g Linum usitatissimum Lus10023561.g I 0.000
Lus10040447.g Linum usitatissimum Lus10040447.g I 0.000
MDP0000224466 Malus domestica MDP0000224466 I 0.000
MDP0000304650 Malus domestica MDP0000304650 I 0.000
MDP0000316517 Malus domestica MDP0000316517 I 0.000
PDK_20s1408301g001 Phoenix dactylifera PDK_20s1408301g001 I 0.000
AMTR_s00044p00155390 Amborella trichopoda AMTR_s00044p00155390 I 0.000
WOX5 Arabidopsis lyrata fgenesh2_kg.3__1167__AT3G11260.1 I 0.000
GLYMA02G10410 Glycine max GLYMA02G10410 I 0.000
GLYMA04G01830 Glycine max GLYMA04G01830 I 0.000
GLYMA06G01940 Glycine max GLYMA06G01940 I 0.000
GLYMA10G43580 Glycine max GLYMA10G43580 I 0.000
GLYMA18G52491 Glycine max GLYMA18G52491 I 0.000
GLYMA20G23220 Glycine max GLYMA20G23220 I 0.000
GRMZM2G069274 Zea mays GRMZM2G069274 I 0.000
GRMZM5G805026 Zea mays GRMZM5G805026 I 0.000
GSMUA_Achr10G07260_001 Musa acuminata GSMUA_Achr10G07260_001 I 0.000
GSMUA_Achr1G17980_001 Musa acuminata GSMUA_Achr1G17980_001 I 0.000
GSMUA_Achr3G14840_001 Musa acuminata GSMUA_Achr3G14840_001 I 0.000
GSMUA_Achr4G25530_001 Musa acuminata GSMUA_Achr4G25530_001 I 0.000
GSMUA_Achr4G29470_001 Musa acuminata GSMUA_Achr4G29470_001 I 0.000
GSMUA_Achr5G11080_001 Musa acuminata GSMUA_Achr5G11080_001 I 0.000
GSMUA_Achr7G04050_001 Musa acuminata GSMUA_Achr7G04050_001 I 0.000
GSMUA_AchrUn_randomG18610_001 Musa acuminata GSMUA_AchrUn_randomG18610_001 I 0.000
WOX10 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1001761 I 0.000
WOX14 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1001881 I 0.000
F775_11596 Aegilops tauschii F775_11596 I 0.000
WOX14 Arabidopsis thaliana AT1G20700 I 0.000
WOX10 Arabidopsis thaliana AT1G20710 I 0.000
WOX5 Arabidopsis thaliana AT3G11260 I 0.000
BGIOSGA004695 Oryza indica BGIOSGA004695 I 0.000
Bo09314s010 Brassica oleracea Bo09314s010 I 0.000
Bo1g006370 Brassica oleracea Bo1g006370 I 0.000
Bo3g155580 Brassica oleracea Bo3g155580 I 0.000
Bo5g030590 Brassica oleracea Bo5g030590 I 0.000
Bo5g136700 Brassica oleracea Bo5g136700 I 0.000
Bo7g061410 Brassica oleracea Bo7g061410 I 0.000
Bo7g117480 Brassica oleracea Bo7g117480 I 0.000
Bra010531 Brassica rapa Bra010531 I 0.000
Bra011623 Brassica rapa Bra011623 I 0.000
Bra012245 Brassica rapa Bra012245 I 0.000
Bra017720 Brassica rapa Bra017720 I 0.000
Bra025839 Brassica rapa Bra025839 I 0.000
BRADI2G53390 Brachypodium distachyon BRADI2G53390 I 0.000
LPERR01G30370 Leersia perrieri LPERR01G30370 I 0.000
MLOC_56124 Hordeum vulgare MLOC_56124 I 0.000
PRUPE_ppa021400mg Prunus persica PRUPE_ppa021400mg I 0.000
Sb03g038080 Sorghum bicolor Sb03g038080 I 0.000
HB-4 Arabidopsis lyrata scaffold_700564.1 I 0.000
SELMODRAFT_404178 Selaginella moellendorffii SELMODRAFT_404178 I 0.000
SELMODRAFT_407157 Selaginella moellendorffii SELMODRAFT_407157 I 0.000
SELMODRAFT_438787 Selaginella moellendorffii SELMODRAFT_438787 I 0.000
SELMODRAFT_451353 Selaginella moellendorffii SELMODRAFT_451353 I 0.000
SELMODRAFT_451355 Selaginella moellendorffii SELMODRAFT_451355 I 0.000
SELMODRAFT_84885 Selaginella moellendorffii SELMODRAFT_84885 I 0.000
Si002508m.g Setaria italica Si002508m.g I 0.000
Solyc02g082670.2 Solanum lycopersicum Solyc02g082670.2 I 0.000
Solyc11g072790.1 Solanum lycopersicum Solyc11g072790.1 I 0.000
TCM_000062 Theobroma cacao TCM_000062 I 0.000
TCM_034409 Theobroma cacao TCM_034409 I 0.000
Traes_3AL_D0053C177 Triticum aestivum Traes_3AL_D0053C177 I 0.000
Traes_3AS_9079D6B71 Triticum aestivum Traes_3AS_9079D6B71 I 0.000
TRAES3BF057600060CFD_g Triticum aestivum TRAES3BF057600060CFD_g I 0.000
PRUPE_ppa011225mg Prunus persica PRUPE_ppa011225mg I 0.000
WOX1 Populus trichocarpa POPTR_0010s12150 I 0.000
POPTR_0005s27410 Populus trichocarpa POPTR_0005s27410 I 0.000
MTR_1g115315 Medicago truncatula MTR_1g115315 I 0.000
MTR_3g115620 Medicago truncatula MTR_3g115620 I 0.000
MTR_7g023810 Medicago truncatula MTR_7g023810 I 0.000
OB01G44030 Oryza brachyantha OB01G44030 I 0.000
OBART01G35170 Oryza barthii OBART01G35170 I 0.000
OLONG_016784 Oryza longistaminata OLONG_016784 I 0.000
OMERI01G32310 Oryza meridionalis OMERI01G32310 I 0.000
ONIVA01G40180 Oryza nivara ONIVA01G40180 I 0.000
OPUNC01G34140 Oryza punctata OPUNC01G34140 I 0.000
ORGLA01G0290300 Oryza glaberrima ORGLA01G0290300 I 0.000
HB-4 Populus trichocarpa POPTR_0005s10480 I 0.000
POPTR_0002s00980 Populus trichocarpa POPTR_0002s00980 I 0.000
TRAES3BF091200090CFD_g Triticum aestivum TRAES3BF091200090CFD_g I 0.000
PGSC0003DMG400001565 Solanum tuberosum PGSC0003DMG400001565 I 0.000
WOX8 Oryza sativa OS01G0818400 I 0.000
ORUFI01G38500 Oryza rufipogon ORUFI01G38500 I 0.000
OSTLU_27102 Ostreococcus lucimarinus OSTLU_27102 N 0.000
gw1.13.333.1 Ostreococcus RCC809 gw1.13.333.1 N 0.000
1300010135 Ostreococcus tauri 1300010135 N 0.000