Scas_Contig673.33 (Saccharomyces castellii)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Scas_Contig673.33 T051641_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
CBF1
M00374_2.00
Saccharomyces cerevisiae
NCACGTGAY

RTCACGTGN
PBM
Berger et al.(2006)
Cbf1
0.839 0.755
CBF1
M01520_2.00
Saccharomyces cerevisiae
CACGTGAYH

DRTCACGTG
PBM
Zhu et al.(2009)
Cbf1
0.839 0.755
CBF1
M07440_2.00
Saccharomyces cerevisiae
TCACGTGH

DCACGTGA
PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0281.1
0.839 0.755
CBF1
M08485_2.00
Saccharomyces cerevisiae
NCAYRTGN

NCAYRTGN
Misc
DeBoer et al.(2011)
YJR060W_1347
0.839 0.755
CBF1
M09483_2.00
Saccharomyces cerevisiae
KCACGTGAYN

NRTCACGTGM
Misc
Heinz et al.(2010)
Yeast-Cbf1_GSE29506
0.839 0.755
CBF1
M09897_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$CBF1_02
0.839 0.755
CBF1
M09898_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$CBF1_03
0.839 0.755
CBF1
M09899_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$CBF1_04
0.839 0.755
CBF1
M09900_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$CBF1_B
0.839 0.755
CBF1
M09901_2.00
Saccharomyces cerevisiae Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$CBF1_Q6
0.839 0.755
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Scas_Contig673.33 bHLH 196 244

Links

Other bHLH family TFs
Other Saccharomyces castellii TFs

11 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
BRADI4G32920 Brachypodium distachyon BRADI4G32920 I 0.000
MLOC_62430 Hordeum vulgare MLOC_62430 I 0.000
MLOC_6062 Hordeum vulgare MLOC_6062 N 0.000
LPERR08G15570 Leersia perrieri LPERR08G15570 I 0.000
LPERR09G10020 Leersia perrieri LPERR09G10020 I 0.000
OBART08G18720 Oryza barthii OBART08G18720 I 0.000
OBART09G13750 Oryza barthii OBART09G13750 I 0.000
OBART09G13760 Oryza barthii OBART09G13760 I 0.000
OB09G20300 Oryza brachyantha OB09G20300 I 0.000
ORGLA08G0162900 Oryza glaberrima ORGLA08G0162900 I 0.000
ORGLA09G0104900 Oryza glaberrima ORGLA09G0104900 I 0.000
OGLUM08G19690 Oryza glumaepatula OGLUM08G19690 I 0.000
OGLUM09G14340 Oryza glumaepatula OGLUM09G14340 I 0.000
BGIOSGA029595 Oryza indica BGIOSGA029595 I 0.000
BGIOSGA026766 Oryza indica BGIOSGA026766 I 0.000
OLONG_013604 Oryza longistaminata OLONG_013604 I 0.000
OMERI08G14760 Oryza meridionalis OMERI08G14760 I 0.000
ONIVA08G20730 Oryza nivara ONIVA08G20730 I 0.000
ONIVA09G14270 Oryza nivara ONIVA09G14270 I 0.000
OPUNC09G12240 Oryza punctata OPUNC09G12240 I 0.000
OPUNC09G12140 Oryza punctata OPUNC09G12140 I 0.000
OPUNC08G16670 Oryza punctata OPUNC08G16670 I 0.000
ORUFI08G08020 Oryza rufipogon ORUFI08G08020 I 0.000
ORUFI09G14730 Oryza rufipogon ORUFI09G14730 I 0.000
OS09G0474000 Oryza sativa OS09G0474000 I 0.000
OS08G0487100 Oryza sativa OS08G0487100 I 0.000
Pavir.Bb02514 Panicum virgatum Pavir.Bb02514 I 0.000
Pavir.Fa00602 Panicum virgatum Pavir.Fa00602 I 0.000
Pavir.Ba01782 Panicum virgatum Pavir.Ba01782 I 0.000
Pavir.Fb01824 Panicum virgatum Pavir.Fb01824 I 0.000
Si031238m.g Setaria italica Si031238m.g I 0.000
Si014433m.g Setaria italica Si014433m.g I 0.000
Sb07g028900 Sorghum bicolor Sb07g028900 I 0.000
Sb07g028960 Sorghum bicolor Sb07g028960 I 0.000
Sb02g027410 Sorghum bicolor Sb02g027410 I 0.000
Traes_5BL_C559EFC8A Triticum aestivum Traes_5BL_C559EFC8A I 0.000
Traes_5DL_591F8EFBD Triticum aestivum Traes_5DL_591F8EFBD I 0.000
Traes_6DL_77ACE1279 Triticum aestivum Traes_6DL_77ACE1279 I 0.000
Traes_6AL_E0ED0DE45 Triticum aestivum Traes_6AL_E0ED0DE45 I 0.000
GRMZM2G144480 Zea mays GRMZM2G144480 I 0.000
AC186606.4_FG003 Zea mays AC186606.4_FG003 I 0.000