twist1 (Xenopus tropicalis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 XB-GENE-479802 T051785_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
twi
M03605_2.00
Drosophila melanogaster
MACACRTGKB

VMCAYGTGTK
SELEX
Nitta et al.(2015)
twi_1
0.883 0.882
twi
M03606_2.00
Drosophila melanogaster
MNDCMYRHCGVD

HBCGDYRKGHNK
SELEX
Nitta et al.(2015)
twi_2
0.883 0.882
twi
M05955_2.00
Drosophila melanogaster
VCCAGATGTB

VACATCTGGB
B1H
Zhu et al.(2011)
twi_da_SANGER_5_FBgn0003900
0.883 0.882
twi
M05956_2.00
Drosophila melanogaster
NAACAYRTGSNV

BNSCAYRTGTTN
B1H
Zhu et al.(2011)
twi_FlyReg_FBgn0003900
0.883 0.882
twi
M07538_2.00
Drosophila melanogaster
NAACAYRTGSNV

BNSCAYRTGTTN
DNaseI footprinting
Mathelier et al.(2014)
MA0249.1
0.883 0.882
twi
M09657_2.00
Drosophila melanogaster
AACAKVTGBBVD

HBVVCABMTGTT
Misc
Kulakovskiy et al.(2009)
twi
0.883 0.882
twi
M09892_2.00
Drosophila melanogaster Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
I$TWI_Q6
0.883 0.882
TWIST1
M08052_2.00
Homo sapiens
NNNCCAGATGTNN

NNACATCTGGNNN
ChIP-seq
Mathelier et al.(2014)
MA1123.1
0.879 0.980
TWIST1
M08722_2.00
Homo sapiens
WAATBRRWWMCAGATGB

VCATCTGKWWYYVATTW
Misc
Kulakovskiy et al.(2013)
TWST1_HUMAN.H11MO.0.A
0.879 0.980
Twist1
M08766_2.00
Mus musculus
WAATNRRWWMCAKMTGB

VCAKMTGKWWYYNATTW
Misc
Kulakovskiy et al.(2013)
TWST1_MOUSE.H11MO.0.B
0.879 0.980
TWIST1
M09831_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TWIST_Q6_01
0.879 0.980
TWIST1
M09832_2.00
Homo sapiens Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$TWIST_Q6
0.879 0.980
Twist2
M01718_2.00
Mus musculus
NACATATGKN

NMCATATGTN
PBM
Weirauch et al.(2014)
pTH5033
0.879 0.941
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAD53290 bHLH 73 123
AAH74558 bHLH 73 123
CAJ82948 bHLH 73 123
DAA06063 bHLH 73 123

Links

Other bHLH family TFs
Other Xenopus tropicalis TFs

239 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
ENSXMAG00000020062 Xiphophorus maculatus ENSXMAG00000020062 I 0.914
twist2 Danio rerio ENSDARG00000078266 I 0.914
twist1.S Xenopus laevis XB-GENE-865309 I 0.914
twist2 Tetraodon nigroviridis ENSTNIG00000001562 I 0.914
twist1.L Xenopus laevis XB-GENE-6255840 I 0.914
ENSPFOG00000020314 Poecilia formosa ENSPFOG00000020314 I 0.914
twist2 Takifugu rubripes ENSTRUG00000006090 I 0.914
twist2 Gasterosteus aculeatus ENSGACG00000002227 I 0.914
ENSONIG00000021342 Oreochromis niloticus ENSONIG00000021342 I 0.914
ISCW009433 Ixodes scapularis ISCW009433 I 0.914
ENSAMXG00000024993 Astyanax mexicanus ENSAMXG00000024993 I 0.914
twist2 Oryzias latipes ENSORLG00000018096 I 0.914
ENSXMAG00000019787 Xiphophorus maculatus ENSXMAG00000019787 I 0.903
TWIST1 Tetraodon nigroviridis ENSTNIG00000001678 I 0.903
twist1 Takifugu rubripes ENSTRUG00000015797 I 0.903
twist1b Tetraodon nigroviridis ENSTNIG00000018440 I 0.903
twist1a Danio rerio ENSDARG00000030402 I 0.903
ENSONIG00000020502 Oreochromis niloticus ENSONIG00000020502 I 0.903
TWIST1 Gasterosteus aculeatus ENSGACG00000006420 I 0.903
ENSONIG00000020610 Oreochromis niloticus ENSONIG00000020610 I 0.903
twist1 Oryzias latipes ENSORLG00000007251 I 0.903
ENSPFOG00000020053 Poecilia formosa ENSPFOG00000020053 I 0.903
ENSPFOG00000019887 Poecilia formosa ENSPFOG00000019887 I 0.903
twist1b Danio rerio ENSDARG00000076010 I 0.903
ENSAMXG00000025610 Astyanax mexicanus ENSAMXG00000025610 I 0.903
ACEP23430 Atta cephalotes ACEP23430 I 0.903
TMUE_s0004013100 Trichuris muris TMUE_s0004013100 I 0.903
D918_07072 Trichuris suis D918_07072 I 0.903
CGI_10013641 Crassostrea gigas CGI_10013641 I 0.903
D917_00468 Trichinella nativa D917_00468 I 0.903
EFV58362 Trichinella spiralis EFV58362 I 0.903
Cflo_04586--NP_001011637.1_APIME Camponotus floridanus Cflo_04586--NP_001011637.1_APIME I 0.903
ENSXMAG00000020142 Xiphophorus maculatus ENSXMAG00000020142 I 0.903
GB40416 Apis mellifera GB40416 I 0.903
TTRE_0000397101 Trichuris trichiura TTRE_0000397101 I 0.903
SPU_030059 Strongylocentrotus purpuratus SPU_030059 I 0.894
BGLB003400 Biomphalaria glabrata BGLB003400 I 0.890
ENSGMOG00000002790 Gadus morhua ENSGMOG00000002790 I 0.890
ASTEI05879 Anopheles stephensi ASTEI05879 I 0.890
ACOM023427 Anopheles coluzzii ACOM023427 I 0.890
PHUM396880 Pediculus humanus PHUM396880 I 0.890
twist3 Takifugu rubripes ENSTRUG00000012607 I 0.890
ENSPMAG00000010126 Petromyzon marinus ENSPMAG00000010126 I 0.890
AATE005140 Anopheles atroparvus AATE005140 I 0.890
AFAF020800 Anopheles farauti AFAF020800 I 0.890
ENSXMAG00000019999 Xiphophorus maculatus ENSXMAG00000019999 I 0.890
AMEC000330 Anopheles melas AMEC000330 I 0.890
twist3 Tetraodon nigroviridis ENSTNIG00000000441 I 0.890
ENSACAG00000009715 Anolis carolinensis ENSACAG00000009715 I 0.890
ENSAMXG00000025095 Astyanax mexicanus ENSAMXG00000025095 I 0.890
AGAP011985 Anopheles gambiae AGAP011985 I 0.890
AAEL002902 Aedes aegypti AAEL002902 I 0.890
ENSAMXG00000025657 Astyanax mexicanus ENSAMXG00000025657 I 0.890
RPRC000323 Rhodnius prolixus RPRC000323 I 0.888
twi Drosophila erecta FBgn0064598 I 0.883
GF13559 Drosophila ananassae FBgn0090588 I 0.883
twi Drosophila yakuba FBgn0084444 I 0.883
twi Drosophila simulans FBgn0016355 I 0.883
twi Drosophila melanogaster FBgn0003900 D 0.883
GH20971 Drosophila grimshawi FBgn0128433 I 0.883
twi Drosophila virilis FBgn0020065 I 0.883
GK19547 Drosophila willistoni FBgn0221545 I 0.883
LCUP006189 Lucilia cuprina LCUP006189 I 0.883
MDOA005417 Musca domestica MDOA005417 I 0.883
ECANG7_02703 Echinococcus canadensis ECANG7_02703 I 0.883
Gfo_R014393 Geospiza fortis Gfo_R014393 I 0.883
ENSTGUG00000003756 Taeniopygia guttata ENSTGUG00000003756 I 0.883
GL11229 Drosophila persimilis FBgn0148838 I 0.883
GM15978 Drosophila sechellia FBgn0170894 I 0.883
GI21307 Drosophila mojavensis FBgn0144037 I 0.883
twi Drosophila pseudoobscura FBgn0243556 I 0.883
ENSFALG00000015081 Ficedula albicollis ENSFALG00000015081 I 0.883
ACUA022223 Anopheles culicifacies ACUA022223 I 0.882
ADIR004364 Anopheles dirus ADIR004364 I 0.882
AEPI000695 Anopheles epiroticus AEPI000695 I 0.882
CPIJ012827 Culex quinquefasciatus CPIJ012827 I 0.882
ACHR006076 Anopheles christyi ACHR006076 I 0.882
AALB010655 Anopheles albimanus AALB010655 I 0.882
CPIJ012828 Culex quinquefasciatus CPIJ012828 I 0.882
AFUN009694 Anopheles funestus AFUN009694 I 0.882
CpipJ_CPIJ012827 Culex pipiens CpipJ_CPIJ012827 I 0.882
AARA000771 Anopheles arabiensis AARA000771 I 0.882
CpipJ_CPIJ012828 Culex pipiens CpipJ_CPIJ012828 I 0.882
AMIN004405 Anopheles minimus AMIN004405 I 0.882
AQUA008654 Anopheles quadriannulatus AQUA008654 I 0.882
AMEM016167 Anopheles merus AMEM016167 I 0.882
YQE_04855 Dendroctonus ponderosae YQE_04855 I 0.879
TC014598 Tribolium castaneum TC014598 I 0.879
ENSAMEG00000008556 Ailuropoda melanoleuca ENSAMEG00000008556 I 0.879
Aan_R001044 Calypte anna Aan_R001044 I 0.879
TWIST1 Macaca mulatta ENSMMUG00000011173 I 0.879
Afo_R010658 Aptenodytes forsteri Afo_R010658 I 0.879
Brh_R012765 Buceros rhinoceros Brh_R012765 I 0.879
Alligator_sinensis_CCG008488.1 Alligator sinensis Alligator_sinensis_CCG008488.1 I 0.879
Alligator_sinensis_CCG002585.1 Alligator sinensis Alligator_sinensis_CCG002585.1 I 0.879
ENSGALG00000026059 Gallus gallus ENSGALG00000026059 I 0.879
Aan_R002857 Calypte anna Aan_R002857 I 0.879
NV10141 Nasonia vitripennis NV10141 I 0.879
Cmyd_10006750 Chelonia mydas Cmyd_10006750 I 0.879
ENSLOCG00000017835 Lepisosteus oculatus ENSLOCG00000017835 I 0.879
TWIST2 Loxodonta africana ENSLAFG00000032174 I 0.879
ENSLACG00000013366 Latimeria chalumnae ENSLACG00000013366 I 0.879
ENSLOCG00000018350 Lepisosteus oculatus ENSLOCG00000018350 I 0.879
TWIST2 Homo sapiens ENSG00000233608 I 0.879
ENSLACG00000012096 Latimeria chalumnae ENSLACG00000012096 I 0.879
NEMVEDRAFT_v1g234699 Nematostella vectensis NEMVEDRAFT_v1g234699 I 0.879
L798_05856 Zootermopsis nevadensis L798_05856 I 0.879
ENSFALG00000014990 Ficedula albicollis ENSFALG00000014990 I 0.879
ENSAMEG00000020165 Ailuropoda melanoleuca ENSAMEG00000020165 I 0.879
Pvit_02271 Pogona vitticeps Pvit_02271 I 0.879
twist1b Gasterosteus aculeatus ENSGACG00000008070 I 0.879
twist1 Anolis carolinensis ENSACAG00000011825 I 0.879
LDEC006528 Leptinotarsa decemlineata LDEC006528 I 0.879
ENSGALG00000004274 Gallus gallus ENSGALG00000004274 I 0.879
DAPPUDRAFT_320202 Daphnia pulex DAPPUDRAFT_320202 I 0.879
CGI_10006631 Crassostrea gigas CGI_10006631 I 0.879
TWIST1 Homo sapiens ENSG00000122691 D 0.879
ACYPI001448 Acyrthosiphon pisum ACYPI001448 I 0.879
BGLB010605 Biomphalaria glabrata BGLB010605 I 0.879
CapteG154829 Capitella teleta CapteG154829 I 0.879
CLEC011700 Cimex lectularius CLEC011700 I 0.879
Sakowv30001350m.g Saccoglossus kowalevskii Sakowv30001350m.g I 0.879
Ogr06591 Ophisaurus gracilis Ogr06591 I 0.879
Myotis_brandtii_Twist1_10031742 Myotis brandtii Myotis_brandtii_Twist1_10031742 I 0.879
Hsal_01530--NP_001011637.1_APIME Harpegnathos saltator Hsal_01530--NP_001011637.1_APIME I 0.879
Gfo_R012065 Geospiza fortis Gfo_R012065 I 0.879
Ogr11552 Ophisaurus gracilis Ogr11552 I 0.879
Ogr11553 Ophisaurus gracilis Ogr11553 I 0.879
Ocbimv22015922m.g Octopus bimaculoides Ocbimv22015922m.g I 0.879
fgenesh2_pm.scaffold_217000008 Branchiostoma floridae fgenesh2_pm.scaffold_217000008 I 0.879
estExt_gwp.C_4170045 Branchiostoma floridae estExt_gwp.C_4170045 I 0.879
ENSMEUG00000013853 Macropus eugenii ENSMEUG00000013853 I 0.879
ENSP00000405176-D1 Bos grunniens ENSP00000405176-D1 I 0.879
SINV20920 Solenopsis invicta SINV20920 I 0.879
ENSPANG00000001578 Papio anubis ENSPANG00000001578 I 0.879
TWIST2 Macaca mulatta ENSMMUG00000021909 I 0.879
TWIST1 Dasypus novemcinctus ENSDNOG00000037354 I 0.879
ENSDORG00000012866 Dipodomys ordii ENSDORG00000012866 I 0.879
TWIST1 Erinaceus europaeus ENSEEUG00000015333 I 0.879
TWIST2 Ochotona princeps ENSOPRG00000017069 I 0.879
TWIST1 Oryzias latipes ENSORLG00000004012 I 0.879
TWIST2 Dasypus novemcinctus ENSDNOG00000002434 I 0.879
ENSPMAG00000003993 Petromyzon marinus ENSPMAG00000003993 I 0.879
TWIST1 Pteropus vampyrus ENSPVAG00000001710 I 0.879
Twist1 Rattus norvegicus ENSRNOG00000011101 I 0.879
TWIST2 Pan troglodytes ENSPTRG00000033910 I 0.879
ENSPTRG00000018960 Pan troglodytes ENSPTRG00000018960 I 0.879
ENSPPYG00000017754 Pongo abelii ENSPPYG00000017754 I 0.879
ENSPSIG00000012843 Pelodiscus sinensis ENSPSIG00000012843 I 0.879
TWIST2 Echinops telfairi ENSETEG00000009809 I 0.879
ENSETEG00000013115 Echinops telfairi ENSETEG00000013115 I 0.879
Twist1 Mus musculus ENSMUSG00000035799 D 0.879
ENSNLEG00000011342 Nomascus leucogenys ENSNLEG00000011342 I 0.879
Twist2 Mus musculus ENSMUSG00000007805 D 0.879
ENSMPUG00000019429 Mustela putorius furo ENSMPUG00000019429 I 0.879
ENSMODG00000001412 Monodelphis domestica ENSMODG00000001412 I 0.879
TWIST1 Monodelphis domestica ENSMODG00000023924 I 0.879
ENSNLEG00000019264 Nomascus leucogenys ENSNLEG00000019264 I 0.879
TWIST1 Ornithorhynchus anatinus ENSOANG00000009614 I 0.879
TWIST2 Otolemur garnettii ENSOGAG00000029007 I 0.879
ENSFALG00000009781 Ficedula albicollis ENSFALG00000009781 I 0.879
TWIST2 Oryctolagus cuniculus ENSOCUG00000004073 I 0.879
ENSOARG00000009754 Ovis aries ENSOARG00000009754 I 0.879
ENSOANG00000012950 Ornithorhynchus anatinus ENSOANG00000012950 I 0.879
ENSOARG00000000265 Ovis aries ENSOARG00000000265 I 0.879
Twist2 Rattus norvegicus ENSRNOG00000020355 I 0.879
ENSMGAG00000002218 Meleagris gallopavo ENSMGAG00000002218 I 0.879
ENSTGUG00000003194 Taeniopygia guttata ENSTGUG00000003194 I 0.879
TWIST2 Callithrix jacchus ENSCJAG00000023006 I 0.879
TWIST1 Taeniopygia guttata ENSTGUG00000002643 I 0.879
TWIST2 Bos taurus ENSBTAG00000021444 I 0.879
ENSSHAG00000003328 Sarcophilus harrisii ENSSHAG00000003328 I 0.879
TWIST1 Bos taurus ENSBTAG00000046922 I 0.879
ENSCSAG00000019610 Chlorocebus sabaeus ENSCSAG00000019610 I 0.879
TWIST2 Myotis lucifugus ENSMLUG00000023316 I 0.879
ENSAPLG00000007177 Anas platyrhynchos ENSAPLG00000007177 I 0.879
ENSAPLG00000000878 Anas platyrhynchos ENSAPLG00000000878 I 0.879
TWIST2 Canis familiaris ENSCAFG00000012469 I 0.879
TWIST1 Sus scrofa ENSSSCG00000015370 I 0.879
ENSCSAG00000018801 Chlorocebus sabaeus ENSCSAG00000018801 I 0.879
TWIST2 Cavia porcellus ENSCPOG00000025980 I 0.879
ENSSTOG00000004633 Ictidomys tridecemlineatus ENSSTOG00000004633 I 0.879
TWIST2 Sus scrofa ENSSSCG00000016343 I 0.879
TWIST1 Myotis lucifugus ENSMLUG00000007047 I 0.879
CapteG111042 Capitella teleta CapteG111042 I 0.876
ENSONIG00000021177 Oreochromis niloticus ENSONIG00000021177 I 0.870
twist3 Takifugu rubripes ENSTRUG00000011374 I 0.870
ENSGMOG00000003155 Gadus morhua ENSGMOG00000003155 I 0.870
ENSLOCG00000018198 Lepisosteus oculatus ENSLOCG00000018198 I 0.870
twist3b Gasterosteus aculeatus ENSGACG00000004773 I 0.870
twist3 Gasterosteus aculeatus ENSGACG00000007963 I 0.870
ENSXMAG00000019956 Xiphophorus maculatus ENSXMAG00000019956 I 0.870
ENSAMXG00000025039 Astyanax mexicanus ENSAMXG00000025039 I 0.870
twist3 Danio rerio ENSDARG00000019646 I 0.870
twist3 Oryzias latipes ENSORLG00000016373 I 0.870
twist2 Xenopus tropicalis XB-GENE-5878700 I 0.870
ENSACAG00000015086 Anolis carolinensis ENSACAG00000015086 I 0.870
ENSPFOG00000020501 Poecilia formosa ENSPFOG00000020501 I 0.870
LLOJ002131 Lutzomyia longipalpis LLOJ002131 I 0.868
PPAI002101 Phlebotomus papatasi PPAI002101 I 0.868
ENSONIG00000021420 Oreochromis niloticus ENSONIG00000021420 I 0.866
ECPE_0000551801 Echinostoma caproni ECPE_0000551801 I 0.859
EmuJ_000663800 Echinococcus multilocularis EmuJ_000663800 I 0.859
Cmyd_10002489 Chelonia mydas Cmyd_10002489 I 0.859
DILT_0001206901 Diphyllobothrium latum DILT_0001206901 I 0.859
TWIST1 Meleagris gallopavo ENSMGAG00000009311 I 0.859
HDID_0001003601 Hymenolepis diminuta HDID_0001003601 I 0.859
HmN_000912800 Hymenolepis microstoma HmN_000912800 I 0.859
SMU15037660 Schmidtea mediterranea SMU15037660 I 0.859
TsM_000716700 Taenia solium TsM_000716700 I 0.859
TASK_0000180901 Taenia asiatica TASK_0000180901 I 0.859
SSLN_0000059301 Schistocephalus solidus SSLN_0000059301 I 0.859
HNAJ_0000179601 Hymenolepis nana HNAJ_0000179601 I 0.859
MCOS_0000111401 Mesocestoides corti MCOS_0000111401 I 0.859
csin110283 Clonorchis sinensis csin110283 I 0.859
Alligator_sinensis_CCG005115.1 Alligator sinensis Alligator_sinensis_CCG005115.1 I 0.859
Ogr01719 Ophisaurus gracilis Ogr01719 I 0.859
A_07561 Schistosoma haematobium A_07561 I 0.859
Pvit_05844 Pogona vitticeps Pvit_05844 I 0.859
Smp_203270 Schistosoma mansoni Smp_203270 I 0.859
ENSGALG00000006321 Gallus gallus ENSGALG00000006321 I 0.859
ENSPSIG00000001961 Pelodiscus sinensis ENSPSIG00000001961 I 0.859
Afo_R013292 Aptenodytes forsteri Afo_R013292 I 0.859
Sjc_0042560 Schistosoma japonicum Sjc_0042560 I 0.859
ENSLACG00000019113 Latimeria chalumnae ENSLACG00000019113 I 0.859
HelroG155122 Helobdella robusta HelroG155122 I 0.856
D915_00417 Fasciola hepatica D915_00417 I 0.851
TRE_0001282801 Trichobilharzia regenti TRE_0001282801 I 0.851
SCUD_0002255501 Schistosoma curassoni SCUD_0002255501 I 0.851
TTAC_0000855201 Hydatigera taeniaeformis TTAC_0000855201 I 0.851
PXEA_0000232401 Protopolystoma xenopodis PXEA_0000232401 I 0.851
tetur03g03150 Tetranychus urticae tetur03g03150 I 0.849
HMEL011603 Heliconius melpomene HMEL011603 I 0.849
KGM_08280 Danaus plexippus KGM_08280 I 0.849
BGIBMGA008990 Bombyx mori BGIBMGA008990 I 0.849
LotgiG179182 Lottia gigantea LotgiG179182 I 0.846
nRc.2.0.1.g46228 Romanomermis culicivorax nRc.2.0.1.g46228 I 0.846
Twist2 Dipodomys ordii ENSDORG00000005906 I 0.838