tcf3.L (Xenopus laevis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 XB-GENE-865159 T051885_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCF3
M02775_2.00 		Homo sapiens
NVCACCTGBN
NVCAGGTGBN		 SELEX
Jolma et al.(2013)
TCF3_1 		0.890 0.962
TCF3
M08710_2.00 		Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB		 Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A 		0.890 0.962
TCF3
M09791_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E12_Q6 		0.890 0.962
TCF3
M09792_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_01 		0.890 0.962
TCF3
M09793_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_02 		0.890 0.962
TCF3
M09794_2.00 		Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB		 Transfac
Matys et al.(2006)
V$E47_01 		0.890 0.962
TCF3
M09795_2.00 		Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN		 Transfac
Matys et al.(2006)
V$E47_02 		0.890 0.962
Tcf3
M09465_2.00 		Mus musculus
ABWTCAAAGS
SCTTTGAWVT		 Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724 		0.862 0.942
Tcf3
M09466_2.00 		Mus musculus
VCAGCTGBNN
NNVCAGCTGB		 Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978 		0.862 0.942
Tcf3
M09886_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E47_05 		0.862 0.942
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.862 0.923
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.862 0.923
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.862 0.923
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.862 0.923
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.862 0.923
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.862 0.923
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.862 0.923
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.862 0.923
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.862 0.923
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.862 0.923
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.862 0.923
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.862 0.923
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.862 0.923
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.862 0.923
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.862 0.827
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.862 0.827
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.862 0.827
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.860 0.885
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.860 0.885
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.860 0.885
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.860 0.885
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.860 0.885
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.860 0.885
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.860 0.885
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.860 0.885
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAH46840 bHLH 556 609
CAA47381 bHLH 556 609

Links

Other bHLH family TFs
Other Xenopus laevis TFs

190 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSSHAG00000013735 Sarcophilus harrisii ENSSHAG00000013735 I 0.890
TCF3 Sus scrofa ENSSSCG00000013437 I 0.890
ENSGMOG00000004189 Gadus morhua ENSGMOG00000004189 I 0.890
TCF3 Pteropus vampyrus ENSPVAG00000014587 I 0.890
TCF3 Pan troglodytes ENSPTRG00000010211 I 0.890
TCF3 Gallus gallus ENSGALG00000001093 I 0.890
TCF3 Homo sapiens ENSG00000071564 D 0.890
ENSXMAG00000006665 Xiphophorus maculatus ENSXMAG00000006665 I 0.890
Aan_R011701 Calypte anna Aan_R011701 I 0.890
TCF3 Echinops telfairi ENSETEG00000015388 I 0.890
ENSFALG00000011409 Ficedula albicollis ENSFALG00000011409 I 0.890
ENSLACG00000016589 Latimeria chalumnae ENSLACG00000016589 I 0.890
ENSSTOG00000010293 Ictidomys tridecemlineatus ENSSTOG00000010293 I 0.890
ENSPSIG00000004202 Pelodiscus sinensis ENSPSIG00000004202 I 0.890
TCF3 Otolemur garnettii ENSOGAG00000003587 I 0.890
ENSMPUG00000008024 Mustela putorius furo ENSMPUG00000008024 I 0.890
ENSOARG00000012495 Ovis aries ENSOARG00000012495 I 0.890
ENSNLEG00000001742 Nomascus leucogenys ENSNLEG00000001742 I 0.890
TCF3 Ornithorhynchus anatinus ENSOANG00000014335 I 0.890
TCF3 Monodelphis domestica ENSMODG00000004143 I 0.890
TCF3 Myotis lucifugus ENSMLUG00000011221 I 0.890
ENSPPYG00000009327 Pongo abelii ENSPPYG00000009327 I 0.890
ENSMEUG00000014058 Macropus eugenii ENSMEUG00000014058 I 0.890
TCF3 Meleagris gallopavo ENSMGAG00000002388 I 0.890
ENSPANG00000016063 Papio anubis ENSPANG00000016063 I 0.890
Tcf3 Dipodomys ordii ENSDORG00000004745 I 0.890
TCF3 Taeniopygia guttata ENSTGUG00000000208 I 0.890
TCF3 Cavia porcellus ENSCPOG00000023586 I 0.890
ENSBTAP00000028599-D1 Bos grunniens ENSBTAP00000028599-D1 I 0.890
Ogr01318 Ophisaurus gracilis Ogr01318 I 0.890
ENSAPLG00000001939 Anas platyrhynchos ENSAPLG00000001939 I 0.890
ENSP00000378813 Macaca fascicularis ENSP00000378813 I 0.890
Gfo_R007595 Geospiza fortis Gfo_R007595 I 0.890
Pvit_09822 Pogona vitticeps Pvit_09822 I 0.890
Brh_R007211 Buceros rhinoceros Brh_R007211 I 0.890
Cmyd_10006706 Chelonia mydas Cmyd_10006706 I 0.890
AAH44064 Xenopus laevis AAH44064 I 0.890
Afo_R010055 Aptenodytes forsteri Afo_R010055 I 0.890
AAA92050 Xenopus laevis AAA92050 I 0.890
ENSAMEG00000003503 Ailuropoda melanoleuca ENSAMEG00000003503 I 0.890
tcf3b Takifugu rubripes ENSTRUG00000017901 I 0.864
ENSONIG00000010206 Oreochromis niloticus ENSONIG00000010206 I 0.864
ENSPPYG00000006505 Pongo abelii ENSPPYG00000006505 I 0.862
ENSPFOG00000001904 Poecilia formosa ENSPFOG00000001904 I 0.862
ENSPANG00000017265 Papio anubis ENSPANG00000017265 I 0.862
ENSPFOG00000024249 Poecilia formosa ENSPFOG00000024249 I 0.862
ENSPFOG00000004140 Poecilia formosa ENSPFOG00000004140 I 0.862
Ogr11405 Ophisaurus gracilis Ogr11405 I 0.862
tcf12.L Xenopus laevis XB-GENE-5799717 I 0.862
Pvit_17395 Pogona vitticeps Pvit_17395 I 0.862
TCF12 Oryzias latipes ENSORLG00000005330 I 0.862
ENSONIG00000008337 Oreochromis niloticus ENSONIG00000008337 I 0.862
ENSONIG00000005794 Oreochromis niloticus ENSONIG00000005794 I 0.862
ENSONIG00000004816 Oreochromis niloticus ENSONIG00000004816 I 0.862
Ocbimv22006241m.g Octopus bimaculoides Ocbimv22006241m.g I 0.862
TCF12 Otolemur garnettii ENSOGAG00000006485 I 0.862
tcf12 Xenopus tropicalis XB-GENE-5799694 I 0.862
ENSOARG00000020872 Ovis aries ENSOARG00000020872 I 0.862
tcf3b Oryzias latipes ENSORLG00000004923 I 0.862
tcf12 Oryzias latipes ENSORLG00000008508 I 0.862
Gfo_R004309 Geospiza fortis Gfo_R004309 I 0.862
TCF12 Takifugu rubripes ENSTRUG00000008110 I 0.862
ENSTSYG00000009264 Tarsius syrichta ENSTSYG00000009264 I 0.862
ENSTNIG00000013705 Tetraodon nigroviridis ENSTNIG00000013705 I 0.862
TCF12 Taeniopygia guttata ENSTGUG00000006270 I 0.862
TCF12 Ornithorhynchus anatinus ENSOANG00000009462 I 0.862
Alligator_sinensis_CCG017304.1 Alligator sinensis Alligator_sinensis_CCG017304.1 I 0.862
Afo_R014990 Aptenodytes forsteri Afo_R014990 I 0.862
ENSXMAG00000014303 Xiphophorus maculatus ENSXMAG00000014303 I 0.862
ENSXMAG00000012718 Xiphophorus maculatus ENSXMAG00000012718 I 0.862
TCF12 Vicugna pacos ENSVPAG00000006545 I 0.862
TCF12 Tursiops truncatus ENSTTRG00000010817 I 0.862
TCF12 Tupaia belangeri ENSTBEG00000002192 I 0.862
ENSSTOG00000001523 Ictidomys tridecemlineatus ENSSTOG00000001523 I 0.862
TCF12 Pteropus vampyrus ENSPVAG00000006184 I 0.862
Aan_R011985 Calypte anna Aan_R011985 I 0.862
TCF12 Pan troglodytes ENSPTRG00000007109 I 0.862
ENSPSIG00000011880 Pelodiscus sinensis ENSPSIG00000011880 I 0.862
Tcf3 Rattus norvegicus ENSRNOG00000051499 I 0.862
Tcf12 Rattus norvegicus ENSRNOG00000057754 I 0.862
ENSSHAG00000015935 Sarcophilus harrisii ENSSHAG00000015935 I 0.862
ENSBTAP00000048638-D1 Bos grunniens ENSBTAP00000048638-D1 I 0.862
ENSP00000331057 Macaca fascicularis ENSP00000331057 I 0.862
TCF12 Sorex araneus ENSSARG00000013798 I 0.862
Myotis_brandtii_Tcf12_10010436 Myotis brandtii Myotis_brandtii_Tcf12_10010436 I 0.862
TCF12 Oryctolagus cuniculus ENSOCUG00000017812 I 0.862
TCF12 Homo sapiens ENSG00000140262 D 0.862
tcf3b Gasterosteus aculeatus ENSGACG00000012737 I 0.862
TCF12 Felis catus ENSFCAG00000031674 I 0.862
ENSFALG00000012146 Ficedula albicollis ENSFALG00000012146 I 0.862
TCF12 Equus caballus ENSECAG00000011678 I 0.862
TCF12 Erinaceus europaeus ENSEEUG00000002182 I 0.862
tcf12 Gasterosteus aculeatus ENSGACG00000015831 I 0.862
TCF12 Gallus gallus ENSGALG00000004304 I 0.862
ENSLACG00000014145 Latimeria chalumnae ENSLACG00000014145 I 0.862
TCF12 Loxodonta africana ENSLAFG00000010546 I 0.862
ENSGMOG00000012207 Gadus morhua ENSGMOG00000012207 I 0.862
ENSGMOG00000008934 Gadus morhua ENSGMOG00000008934 I 0.862
TCF12 Gorilla gorilla ENSGGOG00000008166 I 0.862
TCF3 Equus caballus ENSECAG00000000623 I 0.862
ENSDNOG00000042880 Dasypus novemcinctus ENSDNOG00000042880 I 0.862
TCF12 Bos taurus ENSBTAG00000002586 I 0.862
TCF3 Bos taurus ENSBTAG00000008695 I 0.862
ENSAMXG00000014804 Astyanax mexicanus ENSAMXG00000014804 I 0.862
ENSAMXG00000006548 Astyanax mexicanus ENSAMXG00000006548 I 0.862
TCF12 Anolis carolinensis ENSACAG00000014277 I 0.862
ENSAMEG00000010612 Ailuropoda melanoleuca ENSAMEG00000010612 I 0.862
TCF12 Canis familiaris ENSCAFG00000016200 I 0.862
TCF12 Choloepus hoffmanni ENSCHOG00000003168 I 0.862
tcf3a Danio rerio ENSDARG00000005915 I 0.862
tcf3b Danio rerio ENSDARG00000099999 I 0.862
tcf12 Danio rerio ENSDARG00000004714 I 0.862
ENSCSAG00000011901 Chlorocebus sabaeus ENSCSAG00000011901 I 0.862
TCF12 Cavia porcellus ENSCPOG00000009153 I 0.862
TCF3 Loxodonta africana ENSLAFG00000026277 I 0.862
TCF12 Gasterosteus aculeatus ENSGACG00000006101 I 0.862
Tcf3 Mus musculus ENSMUSG00000020167 D 0.862
TCF12 Microcebus murinus ENSMICG00000009110 I 0.862
Tcf12 Mus musculus ENSMUSG00000032228 D 0.862
TCF12 Myotis lucifugus ENSMLUG00000006205 I 0.862
ENSMPUG00000004438 Mustela putorius furo ENSMPUG00000004438 I 0.862
TCF12 Monodelphis domestica ENSMODG00000008311 I 0.862
TCF12 Macaca mulatta ENSMMUG00000004091 I 0.862
ENSLOCG00000013539 Lepisosteus oculatus ENSLOCG00000013539 I 0.862
ENSMGAG00000005667 Meleagris gallopavo ENSMGAG00000005667 I 0.862
ENSLOCG00000006013 Lepisosteus oculatus ENSLOCG00000006013 I 0.862
ENSNLEG00000006707 Nomascus leucogenys ENSNLEG00000006707 I 0.862
ENSMPUG00000016460 Mustela putorius furo ENSMPUG00000016460 I 0.860
tcf4.S Xenopus laevis XB-GENE-1011632 I 0.860
ENSOGAG00000005735 Otolemur garnettii ENSOGAG00000005735 I 0.860
Cmyd_10020160 Chelonia mydas Cmyd_10020160 I 0.860
TCF4 Callithrix jacchus ENSCJAG00000004038 I 0.860
ENSAMEG00000017162 Ailuropoda melanoleuca ENSAMEG00000017162 I 0.860
ENSNLEG00000007981 Nomascus leucogenys ENSNLEG00000007981 I 0.860
ENSDNOG00000013859 Dasypus novemcinctus ENSDNOG00000013859 I 0.860
TCF4 Monodelphis domestica ENSMODG00000020455 I 0.860
Alligator_sinensis_CCG017823.1 Alligator sinensis Alligator_sinensis_CCG017823.1 I 0.860
ENSP00000381382-D1 Bos grunniens ENSP00000381382-D1 I 0.860
ENSCSAG00000018141 Chlorocebus sabaeus ENSCSAG00000018141 I 0.860
ENSP00000381382 Macaca fascicularis ENSP00000381382 I 0.860
TCF4 Oryctolagus cuniculus ENSOCUG00000002669 I 0.860
Ogr02020 Ophisaurus gracilis Ogr02020 I 0.860
ENSOARG00000005018 Ovis aries ENSOARG00000005018 I 0.860
ENSAMXG00000009833 Astyanax mexicanus ENSAMXG00000009833 I 0.860
Pvit_19114 Pogona vitticeps Pvit_19114 I 0.860
ENSAPLG00000011135 Anas platyrhynchos ENSAPLG00000011135 I 0.860
TCF4 Bos taurus ENSBTAG00000016462 I 0.860
Myotis_brandtii_Tcf4_10017301 Myotis brandtii Myotis_brandtii_Tcf4_10017301 I 0.860
TCF4 Anolis carolinensis ENSACAG00000008863 I 0.860
TCF4 Choloepus hoffmanni ENSCHOG00000000331 I 0.860
tcf4 Xenopus tropicalis XB-GENE-1011628 I 0.860
TCF4 Canis familiaris ENSCAFG00000000140 I 0.860
Afo_R000660 Aptenodytes forsteri Afo_R000660 I 0.860
Tcf4 Mus musculus ENSMUSG00000053477 D 0.860
ENSONIG00000012720 Oreochromis niloticus ENSONIG00000012720 I 0.860
TCF4 Gorilla gorilla ENSGGOG00000016297 I 0.860
ENSPMAG00000000958 Petromyzon marinus ENSPMAG00000000958 I 0.860
ENSGMOG00000015710 Gadus morhua ENSGMOG00000015710 I 0.860
ENSSHAG00000014955 Sarcophilus harrisii ENSSHAG00000014955 I 0.860
ENSPFOG00000009937 Poecilia formosa ENSPFOG00000009937 I 0.860
ENSMEUG00000003794 Macropus eugenii ENSMEUG00000003794 I 0.860
TCF4 Sus scrofa ENSSSCG00000004535 I 0.860
Tcf4 Rattus norvegicus ENSRNOG00000012405 I 0.860
ENSGMOG00000018104 Gadus morhua ENSGMOG00000018104 I 0.860
ENSPSIG00000014469 Pelodiscus sinensis ENSPSIG00000014469 I 0.860
TCF4 Loxodonta africana ENSLAFG00000013449 I 0.860
ENSPPYG00000009175 Pongo abelii ENSPPYG00000009175 I 0.860
TCF4 Pan troglodytes ENSPTRG00000010040 I 0.860
ENSLACG00000003485 Latimeria chalumnae ENSLACG00000003485 I 0.860
TCF4 Pteropus vampyrus ENSPVAG00000002074 I 0.860
TCF4 Macaca mulatta ENSMMUG00000012001 I 0.860
ENSSTOG00000005134 Ictidomys tridecemlineatus ENSSTOG00000005134 I 0.860
TCF4 Tursiops truncatus ENSTTRG00000011542 I 0.860
ENSMLUG00000012927 Myotis lucifugus ENSMLUG00000012927 I 0.860
TCF4 Erinaceus europaeus ENSEEUG00000000134 I 0.860
TCF4 Equus caballus ENSECAG00000017265 I 0.860
ENSXMAG00000011822 Xiphophorus maculatus ENSXMAG00000011822 I 0.860
Tcf4 Dipodomys ordii ENSDORG00000012697 I 0.860
TCF4 Ornithorhynchus anatinus ENSOANG00000003082 I 0.860
ENSTSYG00000009542 Tarsius syrichta ENSTSYG00000009542 I 0.860
ENSGACG00000000628 Gasterosteus aculeatus ENSGACG00000000628 I 0.860
TCF4 Tupaia belangeri ENSTBEG00000015498 I 0.860
TCF4 Homo sapiens ENSG00000196628 D 0.860
TCF4 Microcebus murinus ENSMICG00000012305 I 0.860
TCF4 Felis catus ENSFCAG00000014682 I 0.860
ENSORLG00000015062 Oryzias latipes ENSORLG00000015062 I 0.860
ENSLOCG00000003538 Lepisosteus oculatus ENSLOCG00000003538 I 0.860
AAA92048 Xenopus laevis AAA92048 I 0.842
tcf12 Xenopus laevis XB-GENE-5799694 I 0.842