chr1.CM0318.250.nd (Lotus japonicus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 chr1.CM0318.250.nd T052008_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
OS08G0506700
M01755_2.00
Oryza sativa
NCCACTTGN

NCAAGTGGN
PBM
Weirauch et al.(2014)
pTH8547
0.864 0.878
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.CM0318.250.nd bHLH 72 120

Links

Other bHLH family TFs
Other Lotus japonicus TFs

133 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Bra037732 Brassica rapa Bra037732 N 0.879
Bo4g194080 Brassica oleracea Bo4g194080 N 0.879
GLYMA19G32600 Glycine max GLYMA19G32600 I 0.879
orange1.1g016638m.g Citrus sinensis orange1.1g016638m.g I 0.876
gene26967-v1.0-hybrid Fragaria vesca gene26967-v1.0-hybrid I 0.876
Ciclev10031622m.g Citrus clementina Ciclev10031622m.g I 0.876
GLYMA03G29750 Glycine max GLYMA03G29750 N 0.873
evm.TU.supercontig_85.115 Carica papaya evm.TU.supercontig_85.115 I 0.865
OS08G0506700 Oryza sativa OS08G0506700 D 0.864
MLOC_67834 Hordeum vulgare MLOC_67834 I 0.864
OMERI09G11370 Oryza meridionalis OMERI09G11370 I 0.864
OS09G0487900 Oryza sativa OS09G0487900 I 0.864
ORUFI09G15820 Oryza rufipogon ORUFI09G15820 I 0.864
ORUFI08G22260 Oryza rufipogon ORUFI08G22260 I 0.864
OLONG_017566 Oryza longistaminata OLONG_017566 I 0.864
OGLUM09G15300 Oryza glumaepatula OGLUM09G15300 I 0.864
OGLUM08G21000 Oryza glumaepatula OGLUM08G21000 I 0.864
OBART08G19860 Oryza barthii OBART08G19860 I 0.864
OBART09G14660 Oryza barthii OBART09G14660 I 0.864
OB08G26810 Oryza brachyantha OB08G26810 I 0.864
ONIVA08G17500 Oryza nivara ONIVA08G17500 I 0.864
Traes_7DS_B671A4EAD Triticum aestivum Traes_7DS_B671A4EAD I 0.864
OPUNC09G13060 Oryza punctata OPUNC09G13060 I 0.864
OPUNC08G18020 Oryza punctata OPUNC08G18020 I 0.864
BGIOSGA028963 Oryza indica BGIOSGA028963 I 0.864
TRIUR3_26625 Triticum urartu TRIUR3_26625 I 0.864
BRADI3G39927 Brachypodium distachyon BRADI3G39927 I 0.864
F775_24151 Aegilops tauschii F775_24151 I 0.864
ONIVA08G22410 Oryza nivara ONIVA08G22410 I 0.864
BGIOSGA031008 Oryza indica BGIOSGA031008 I 0.864
OMERI08G16700 Oryza meridionalis OMERI08G16700 I 0.864
Traes_7AS_4FAB72487 Triticum aestivum Traes_7AS_4FAB72487 I 0.864
ORGLA08G0174800 Oryza glaberrima ORGLA08G0174800 I 0.864
ORGLA09G0112900 Oryza glaberrima ORGLA09G0112900 I 0.864
PRUPE_ppa006134mg Prunus persica PRUPE_ppa006134mg I 0.863
Pm016406 Prunus mume Pm016406 I 0.863
SapurV1A.0111s0030 Salix purpurea SapurV1A.0111s0030 I 0.862
SapurV1A.1898s0040 Salix purpurea SapurV1A.1898s0040 I 0.862
Si010513m.g Setaria italica Si010513m.g I 0.861
Sb06g020810 Sorghum bicolor Sb06g020810 I 0.861
ORGLA02G0200100 Oryza glaberrima ORGLA02G0200100 I 0.861
Sb04g025260 Sorghum bicolor Sb04g025260 I 0.861
ORUFI02G24640 Oryza rufipogon ORUFI02G24640 I 0.861
OPUNC02G21170 Oryza punctata OPUNC02G21170 I 0.861
GSMUA_Achr6G21220_001 Musa acuminata GSMUA_Achr6G21220_001 I 0.861
Pavir.Ab02229 Panicum virgatum Pavir.Ab02229 I 0.861
Pavir.Ga01365 Panicum virgatum Pavir.Ga01365 I 0.861
Pavir.Gb01377 Panicum virgatum Pavir.Gb01377 I 0.861
BGIOSGA008576 Oryza indica BGIOSGA008576 I 0.861
Pavir.J08536 Panicum virgatum Pavir.J08536 I 0.861
LPERR02G18900 Leersia perrieri LPERR02G18900 I 0.861
GRMZM2G437481 Zea mays GRMZM2G437481 I 0.861
OB02G30670 Oryza brachyantha OB02G30670 I 0.861
OBART02G23210 Oryza barthii OBART02G23210 I 0.861
OLONG_009256 Oryza longistaminata OLONG_009256 I 0.861
ONIVA02G26110 Oryza nivara ONIVA02G26110 I 0.861
Pavir.Aa01423 Panicum virgatum Pavir.Aa01423 I 0.861
OMERI02G22740 Oryza meridionalis OMERI02G22740 I 0.861
Aquca_009_00280 Aquilegia coerulea Aquca_009_00280 I 0.852
Ciclev10005233m.g Citrus clementina Ciclev10005233m.g I 0.852
PDK_20s1391471g001 Phoenix dactylifera PDK_20s1391471g001 I 0.852
PK18038.1 Cannabis sativa PK18038.1 I 0.852
mgf016734m Mimulus guttatus mgf016734m I 0.852
Cucsa.242910 Cucumis sativus Cucsa.242910 I 0.852
cassava30692.valid.m1 Manihot esculenta cassava30692.valid.m1 I 0.852
cassava35967.valid.m1 Manihot esculenta cassava35967.valid.m1 I 0.852
MDP0000180376 Malus domestica MDP0000180376 I 0.852
cassava44054.valid.m1 Manihot esculenta cassava44054.valid.m1 I 0.852
SapurV1A.0133s0050 Salix purpurea SapurV1A.0133s0050 I 0.852
SapurV1A.0018s0320 Salix purpurea SapurV1A.0018s0320 I 0.852
cassava2126.valid.m1 Manihot esculenta cassava2126.valid.m1 I 0.852
Lus10031255.g Linum usitatissimum Lus10031255.g I 0.852
Lus10021023.g Linum usitatissimum Lus10021023.g I 0.852
Gorai.002G228900 Gossypium raimondii Gorai.002G228900 I 0.852
Lus10031826.g Linum usitatissimum Lus10031826.g I 0.852
gene20622-v1.0-hybrid Fragaria vesca gene20622-v1.0-hybrid I 0.852
Eucgr.A02417 Eucalyptus grandis Eucgr.A02417 I 0.852
evm.TU.supercontig_84.89 Carica papaya evm.TU.supercontig_84.89 I 0.852
orange1.1g018007m.g Citrus sinensis orange1.1g018007m.g I 0.852
gene00545-v1.0-hybrid Fragaria vesca gene00545-v1.0-hybrid I 0.852
Gorai.006G140200 Gossypium raimondii Gorai.006G140200 I 0.852
Solyc10g079050.1 Solanum lycopersicum Solyc10g079050.1 I 0.852
POPTR_0016s05100 Populus trichocarpa POPTR_0016s05100 I 0.852
PRUPE_ppa019977mg Prunus persica PRUPE_ppa019977mg I 0.852
TCM_024842 Theobroma cacao TCM_024842 I 0.852
VIT_08s0007g07810 Vitis vinifera VIT_08s0007g07810 I 0.852
POPTR_0006s05640 Populus trichocarpa POPTR_0006s05640 I 0.852
PGSC0003DMG400008153 Solanum tuberosum PGSC0003DMG400008153 I 0.852
GLYMA10G12150 Glycine max GLYMA10G12150 I 0.852
GSMUA_Achr5G22310_001 Musa acuminata GSMUA_Achr5G22310_001 I 0.852
GSMUA_Achr7G20490_001 Musa acuminata GSMUA_Achr7G20490_001 I 0.852
Cla017792 Citrullus lanatus Cla017792 I 0.852
PRUPE_ppa006295mg Prunus persica PRUPE_ppa006295mg I 0.852
Pm025821 Prunus mume Pm025821 I 0.852
29216.m000261 Ricinus communis 29216.m000261 I 0.852
Pm000447 Prunus mume Pm000447 I 0.852
30152.m002405 Ricinus communis 30152.m002405 I 0.850
POPTR_0009s06910 Populus trichocarpa POPTR_0009s06910 I 0.850
VIT_13s0064g01290 Vitis vinifera VIT_13s0064g01290 I 0.850
cassava29651.valid.m1 Manihot esculenta cassava29651.valid.m1 I 0.850
Solyc01g086870.2 Solanum lycopersicum Solyc01g086870.2 I 0.850
PGSC0003DMG400025263 Solanum tuberosum PGSC0003DMG400025263 I 0.850
MTR_4g033295 Medicago truncatula MTR_4g033295 I 0.849
PDK_20s1484071g001 Phoenix dactylifera PDK_20s1484071g001 I 0.849
PDK_20s1630671g001 Phoenix dactylifera PDK_20s1630671g001 I 0.849
cassava35513.valid.m1 Manihot esculenta cassava35513.valid.m1 I 0.844
GLYMA08G16190 Glycine max GLYMA08G16190 I 0.844
Cucsa.050160 Cucumis sativus Cucsa.050160 I 0.844
30149.m000231 Ricinus communis 30149.m000231 I 0.844
Bra004748 Brassica rapa Bra004748 I 0.841
fgenesh2_kg.4__2475__AT2G43140.1 Arabidopsis lyrata fgenesh2_kg.4__2475__AT2G43140.1 I 0.841
SapurV1A.0529s0060 Salix purpurea SapurV1A.0529s0060 I 0.841
Thhalv10016998m.g Eutrema salsugineum Thhalv10016998m.g I 0.841
chr5.LjT42F22.20.nc Lotus japonicus chr5.LjT42F22.20.nc I 0.841
Bo3g036400 Brassica oleracea Bo3g036400 I 0.841
Bo4g019620 Brassica oleracea Bo4g019620 I 0.841
PK07850.1 Cannabis sativa PK07850.1 I 0.841
GLYMA20G39220 Glycine max GLYMA20G39220 I 0.841
Bra000291 Brassica rapa Bra000291 I 0.841
Bostr.25993s0461 Boechera stricta Bostr.25993s0461 I 0.841
VIT_05s0124g00240 Vitis vinifera VIT_05s0124g00240 I 0.841
Gorai.011G144600 Gossypium raimondii Gorai.011G144600 I 0.841
PRUPE_ppa025178mg Prunus persica PRUPE_ppa025178mg I 0.841
TCM_020066 Theobroma cacao TCM_020066 I 0.841
Solyc09g098110.2 Solanum lycopersicum Solyc09g098110.2 I 0.841
Pm007619 Prunus mume Pm007619 I 0.841
mgf005043m Mimulus guttatus mgf005043m I 0.841
PGSC0003DMG400006569 Solanum tuberosum PGSC0003DMG400006569 I 0.841
AT2G43140 Arabidopsis thaliana AT2G43140 I 0.841
MDP0000273574 Malus domestica MDP0000273574 I 0.841
Cagra.3706s0004 Capsella grandiflora Cagra.3706s0004 I 0.841
Carubv10023683m.g Capsella rubella Carubv10023683m.g I 0.841
Aquca_058_00134 Aquilegia coerulea Aquca_058_00134 I 0.841