LjSGA_136560.1 (Lotus japonicus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 LjSGA_136560.1 T052163_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
AT2G22750
M06730_2.00
Arabidopsis thaliana
MRYGTKDNHCACGTGNN

NNCACGTGDNHMACRYK
Dap-seq
OMalley et al.(2016)
bHLH18_col_a
0.859 0.735
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
LjSGA_136560.1 bHLH 122 170

Links

Other bHLH family TFs
Other Lotus japonicus TFs

145 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
GLYMA13G32650 Glycine max GLYMA13G32650 I 0.914
GLYMA15G06680 Glycine max GLYMA15G06680 I 0.914
Ca_00186 Cicer arietinum Ca_00186 I 0.893
Bra038458 Brassica rapa Bra038458 I 0.863
Carubv10007725m.g Capsella rubella Carubv10007725m.g I 0.863
Bostr.30275s0092 Boechera stricta Bostr.30275s0092 I 0.863
PGSC0003DMG400007010 Solanum tuberosum PGSC0003DMG400007010 I 0.863
Bo7g104400 Brassica oleracea Bo7g104400 I 0.863
Cagra.3528s0002 Capsella grandiflora Cagra.3528s0002 I 0.863
scaffold_702851.1 Arabidopsis lyrata scaffold_702851.1 I 0.863
Thhalv10025122m.g Eutrema salsugineum Thhalv10025122m.g I 0.863
BHLH3 Arabidopsis thaliana AT4G16430 I 0.863
Solyc05g050560.1 Solanum lycopersicum Solyc05g050560.1 I 0.863
Bo1g054800 Brassica oleracea Bo1g054800 I 0.863
cassava35671.valid.m1 Manihot esculenta cassava35671.valid.m1 I 0.861
Cagra.5392s0006 Capsella grandiflora Cagra.5392s0006 I 0.861
cassava37087.valid.m1 Manihot esculenta cassava37087.valid.m1 I 0.861
cassava20178.m1 Manihot esculenta cassava20178.m1 I 0.861
Aquca_010_00012 Aquilegia coerulea Aquca_010_00012 I 0.861
Cucsa.218800 Cucumis sativus Cucsa.218800 I 0.861
28179.m000478 Ricinus communis 28179.m000478 I 0.861
AMTR_s00033p00078670 Amborella trichopoda AMTR_s00033p00078670 I 0.861
VIT_07s0205g00160 Vitis vinifera VIT_07s0205g00160 I 0.861
VIT_03s0088g01240 Vitis vinifera VIT_03s0088g01240 I 0.861
TCM_000895 Theobroma cacao TCM_000895 I 0.861
Pm002305 Prunus mume Pm002305 I 0.861
Pm021008 Prunus mume Pm021008 I 0.861
cassava16019.m1 Manihot esculenta cassava16019.m1 I 0.861
29804.m001498 Ricinus communis 29804.m001498 I 0.861
28179.m000479 Ricinus communis 28179.m000479 I 0.861
cassava18197.valid.m1 Manihot esculenta cassava18197.valid.m1 I 0.861
Eucgr.I02518 Eucalyptus grandis Eucgr.I02518 I 0.861
Pavir.J01849 Panicum virgatum Pavir.J01849 I 0.861
orange1.1g021208m.g Citrus sinensis orange1.1g021208m.g I 0.861
MDP0000502440 Malus domestica MDP0000502440 I 0.861
MDP0000291132 Malus domestica MDP0000291132 I 0.861
Pavir.J35103 Panicum virgatum Pavir.J35103 I 0.861
SapurV1A.0019s0910 Salix purpurea SapurV1A.0019s0910 I 0.861
PK11573.1 Cannabis sativa PK11573.1 I 0.861
PK09122.1 Cannabis sativa PK09122.1 I 0.861
SapurV1A.3034s0010 Salix purpurea SapurV1A.3034s0010 I 0.861
SapurV1A.0279s0180 Salix purpurea SapurV1A.0279s0180 I 0.861
MDP0000174149 Malus domestica MDP0000174149 I 0.861
Lus10039639.g Linum usitatissimum Lus10039639.g I 0.861
evm.TU.supercontig_129.37 Carica papaya evm.TU.supercontig_129.37 I 0.861
Si036393m.g Setaria italica Si036393m.g I 0.861
Eucgr.I00634 Eucalyptus grandis Eucgr.I00634 I 0.861
Ciclev10028925m.g Citrus clementina Ciclev10028925m.g I 0.861
gene05610-v1.0-hybrid Fragaria vesca gene05610-v1.0-hybrid I 0.861
gene05612-v1.0-hybrid Fragaria vesca gene05612-v1.0-hybrid I 0.861
Lus10003488.g Linum usitatissimum Lus10003488.g I 0.861
Gorai.007G228900 Gossypium raimondii Gorai.007G228900 I 0.861
Gorai.003G034700 Gossypium raimondii Gorai.003G034700 I 0.861
Gorai.002G211500 Gossypium raimondii Gorai.002G211500 I 0.861
Carubv10025041m.g Capsella rubella Carubv10025041m.g I 0.861
Cla000123 Citrullus lanatus Cla000123 I 0.861
ORGLA03G0295100 Oryza glaberrima ORGLA03G0295100 I 0.861
OPUNC03G29750 Oryza punctata OPUNC03G29750 I 0.861
ONIVA03G34090 Oryza nivara ONIVA03G34090 I 0.861
ORUFI03G33950 Oryza rufipogon ORUFI03G33950 I 0.861
OS03G0725800 Oryza sativa OS03G0725800 I 0.861
POPTR_0005s09810 Populus trichocarpa POPTR_0005s09810 I 0.861
POPTR_0001s29400 Populus trichocarpa POPTR_0001s29400 I 0.861
OMERI03G29350 Oryza meridionalis OMERI03G29350 I 0.861
OGLUM03G32210 Oryza glumaepatula OGLUM03G32210 I 0.861
GRMZM2G019806 Zea mays GRMZM2G019806 I 0.861
fgenesh2_kg.4__196__AT2G22750.1 Arabidopsis lyrata fgenesh2_kg.4__196__AT2G22750.1 I 0.861
BGIOSGA013493 Oryza indica BGIOSGA013493 I 0.861
GRMZM2G082343 Zea mays GRMZM2G082343 I 0.861
GSMUA_Achr2G08590_001 Musa acuminata GSMUA_Achr2G08590_001 I 0.861
OBART03G32580 Oryza barthii OBART03G32580 I 0.861
LPERR03G27220 Leersia perrieri LPERR03G27220 I 0.861
POPTR_0009s08500 Populus trichocarpa POPTR_0009s08500 I 0.861
GSMUA_AchrUn_randomG15440_001 Musa acuminata GSMUA_AchrUn_randomG15440_001 I 0.861
PRUPE_ppa017640mg Prunus persica PRUPE_ppa017640mg I 0.861
PRUPE_ppa008130mg Prunus persica PRUPE_ppa008130mg I 0.861
SELMODRAFT_48361 Selaginella moellendorffii SELMODRAFT_48361 I 0.861
Sb01g009590 Sorghum bicolor Sb01g009590 I 0.861
SELMODRAFT_34848 Selaginella moellendorffii SELMODRAFT_34848 I 0.861
MTR_2g010450 Medicago truncatula MTR_2g010450 N 0.860
Bra039924 Brassica rapa Bra039924 I 0.859
MDP0000318216 Malus domestica MDP0000318216 I 0.859
Ciclev10027158m.g Citrus clementina Ciclev10027158m.g I 0.859
orange1.1g037441m.g Citrus sinensis orange1.1g037441m.g I 0.859
evm.TU.supercontig_20.63 Carica papaya evm.TU.supercontig_20.63 I 0.859
Solyc01g106460.2 Solanum lycopersicum Solyc01g106460.2 I 0.859
Bra030210 Brassica rapa Bra030210 I 0.859
Bo4g150960 Brassica oleracea Bo4g150960 I 0.859
MDP0000170202 Malus domestica MDP0000170202 I 0.859
Thhalv10000426m.g Eutrema salsugineum Thhalv10000426m.g I 0.859
GLYMA11G04690 Glycine max GLYMA11G04690 I 0.859
PDK_20s1394471g002 Phoenix dactylifera PDK_20s1394471g002 I 0.859
AT2G22750 Arabidopsis thaliana AT2G22750 D 0.859
PGSC0003DMG400005101 Solanum tuberosum PGSC0003DMG400005101 I 0.859
MDP0000159571 Malus domestica MDP0000159571 I 0.859
Lus10020503.g Linum usitatissimum Lus10020503.g I 0.858
TCM_006357 Theobroma cacao TCM_006357 I 0.858
Lus10012457.g Linum usitatissimum Lus10012457.g I 0.858
LjT17L12.80.nd Lotus japonicus LjT17L12.80.nd I 0.858
PDK_20s1524891g002 Phoenix dactylifera PDK_20s1524891g002 I 0.858
Eucgr.H02390 Eucalyptus grandis Eucgr.H02390 I 0.856
chr2.CM0021.380.nc Lotus japonicus chr2.CM0021.380.nc I 0.856
Eucgr.H02389 Eucalyptus grandis Eucgr.H02389 I 0.856
chr2.CM0021.410.nc Lotus japonicus chr2.CM0021.410.nc I 0.855
OS03G0671800 Oryza sativa OS03G0671800 I 0.852
Bo3g153150 Brassica oleracea Bo3g153150 I 0.850
Bo1g003350 Brassica oleracea Bo1g003350 I 0.850
Thhalv10025715m.g Eutrema salsugineum Thhalv10025715m.g I 0.850
BHLH25 Arabidopsis thaliana AT4G37850 I 0.850
Cagra.6066s0006 Capsella grandiflora Cagra.6066s0006 I 0.850
Carubv10006834m.g Capsella rubella Carubv10006834m.g I 0.850
Bra011790 Brassica rapa Bra011790 I 0.850
Bra010617 Brassica rapa Bra010617 I 0.850
orange1.1g026436m.g Citrus sinensis orange1.1g026436m.g I 0.848
Bra013128 Brassica rapa Bra013128 I 0.848
GLYMA07G30420 Glycine max GLYMA07G30420 I 0.848
VIT_00s0824g00020 Vitis vinifera VIT_00s0824g00020 I 0.848
Ciclev10027504m.g Citrus clementina Ciclev10027504m.g I 0.848
VIT_00s0927g00010 Vitis vinifera VIT_00s0927g00010 I 0.848
POPTR_0007s14480 Populus trichocarpa POPTR_0007s14480 I 0.847
SapurV1A.0821s0050 Salix purpurea SapurV1A.0821s0050 I 0.847
Gorai.003G034600 Gossypium raimondii Gorai.003G034600 I 0.846
TCM_000894 Theobroma cacao TCM_000894 I 0.846
Gorai.007G229000 Gossypium raimondii Gorai.007G229000 I 0.846
gene07355-v1.0-hybrid Fragaria vesca gene07355-v1.0-hybrid I 0.845
GLYMA11G04681 Glycine max GLYMA11G04681 I 0.844
MTR_5g014520 Medicago truncatula MTR_5g014520 I 0.844
Ca_02263 Cicer arietinum Ca_02263 I 0.844
GLYMA01G40620 Glycine max GLYMA01G40620 I 0.844
Ca_02264 Cicer arietinum Ca_02264 I 0.844
Gorai.008G087600 Gossypium raimondii Gorai.008G087600 I 0.843
Cla014288 Citrullus lanatus Cla014288 I 0.843
Cucsa.103630 Cucumis sativus Cucsa.103630 I 0.842
chr5.CM0158.350.nd Lotus japonicus chr5.CM0158.350.nd I 0.842
chr3.LjT47G05.50.nc Lotus japonicus chr3.LjT47G05.50.nc I 0.842
PRUPE_ppa007561mg Prunus persica PRUPE_ppa007561mg I 0.841
MLOC_64735 Hordeum vulgare MLOC_64735 I 0.841
Pm002304 Prunus mume Pm002304 I 0.841
BRADI1G10170 Brachypodium distachyon BRADI1G10170 I 0.841
Traes_4AL_F3571097B Triticum aestivum Traes_4AL_F3571097B I 0.841
Traes_4BS_34AF89ACE Triticum aestivum Traes_4BS_34AF89ACE I 0.841
F775_11371 Aegilops tauschii F775_11371 I 0.841
TRIUR3_26880 Triticum urartu TRIUR3_26880 I 0.841
Traes_4DS_7F3D9E4D9 Triticum aestivum Traes_4DS_7F3D9E4D9 I 0.841
Pavir.Ia03339 Panicum virgatum Pavir.Ia03339 I 0.838